ClCG11G008640 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G008640
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	50S ribosomal protein L18 family
Location	CG_Chr11 : 12578862 .. 12580427 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTGGTGTTGGACCGTGAAGTCACGGAAGTTGAGAGCAATTGCACGGGAGAATTTTATTTTATTCCCGTTGGGAAATTCTGTTTACAAGTGTTGTTCTAACGGAGGTGTCAAAGGGGATCCCAGAACAGGGAAAATCGCTTCTATTCTTTGTGCAGTTTGTCCATGGACTAATCCTTGTGTACAACAAAGGCATCATTTCGCCAAAGACGTGTATGCATTACACCAAGTGGTTGGACTTTTAATTTATTTTTCTGTTCAATAGTCAGTAAGACATTTCATTTTTTTAGGTCAAACAGTATGTGATGGTAAAGATTCAAATCTTTGACTTTTTGTTTGAGGTCAACATGCCTTAACCCCAAGTTCAAGATGACAGTGGTAGTGGAAGCTTTTTCAAAATAAGTTTTGTATTATGAATAAACTGGAAGGAGCTTGAACATATGACTCGTCGAGTTACTAAATGCTTAATTATTTGAGCTATGCCAAATTTGAGAAATTAAAGAGTTTGTACTCTGGTACCATGTACAATAAAAGAAAGAAAAATATTTGCTTGGAAATTATGTGAAAAGCTCGGTGCAGAGCATATCAATTGGTATTGATATTTATAGATAACAGACGACCACGTGTCAGAAAAGTACAAGGCAAACATATAACAGAAAAGATTATCCAAAAAATACAAGTAAAAGAAAGGAAAGTACAATAGAAATTACTGAGGTAAAATTATTCACTGCTCATGTTTTCAAGAAAAAAAAGACATACTTATTATCCCGTGCATATTTGCCTTGTTTTAACAATAGCAAGCCAGTGTATTTCATTTTAGTTGCTAGCCTTGACTAGATACTATATAGAGTCAGGTTAGAGCAAAGCTGCATAAGCGGCGTTTAGTCAATAAATCCATGCCTGTTTGTATTCACTCTTTAAACGGAGCTAGATAACTGTTAAGATCTGTATTTCTTTTGATAAAGAACCAGCATGTTTACACTTGTAGGGTTTATTTATACAATCAGCTTGGACAAGAAGGTCTCGAGGGGAGGCTGCGAAGCGACCAAACAAGAAATCATGGAAACAAAGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTTTTTTCGAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACTAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTTAGAAACAGTCTACCATCCCTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATTTCGTATGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAAATTGGCATTGTTATTGATACCATTAAGGAGAACGGGATCATGTTTGTACCTTGAATTTATATAAAGGCAAGAATAATAAGACGATAAACAACTCATCTAAAGCCTCTTATAGGTAGTAGATGATTGTATTGTAAAAGCTGACATCCTCCTGTTTAGCTTGGTTGAAATATCCGAAGCTGTTGCTCTTACCAAAACCTCTCCTACATGCTATGCCAGAACACTAGTTTATTT

mRNA sequence

ATGCTTTGGTGTTGGACCGTGAAGTCACGGAAGTTGAGAGCAATTGCACGGGAGAATTTTATTTTATTCCCGTTGGGAAATTCTGTTTACAAGTGTTGTTCTAACGGAGGTGTCAAAGGGGATCCCAGAACAGGGAAAATCGCTTCTATTCTTTGTGCAGTTTGTCCATGGACTAATCCTTGTGTACAACAAAGGCATCATTTCGCCAAAGACGGTTTATTTATACAATCAGCTTGGACAAGAAGGTCTCGAGGGGAGGCTGCGAAGCGACCAAACAAGAAATCATGGAAACAAAGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTTTTTTCGAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACTAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTTAGAAACAGTCTACCATCCCTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATTTCGTATGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAAATTGGCATTGTTATTGATACCATTAAGGAGAACGGGATCATGTTTGTACCTTGAATTTATATAAAGGCAAGAATAATAAGACGATAAACAACTCATCTAAAGCCTCTTATAGGTAGTAGATGATTGTATTGTAAAAGCTGACATCCTCCTGTTTAGCTTGGTTGAAATATCCGAAGCTGTTGCTCTTACCAAAACCTCTCCTACATGCTATGCCAGAACACTAGTTTATTT

Coding sequence (CDS)

ATGCTTTGGTGTTGGACCGTGAAGTCACGGAAGTTGAGAGCAATTGCACGGGAGAATTTTATTTTATTCCCGTTGGGAAATTCTGTTTACAAGTGTTGTTCTAACGGAGGTGTCAAAGGGGATCCCAGAACAGGGAAAATCGCTTCTATTCTTTGTGCAGTTTGTCCATGGACTAATCCTTGTGTACAACAAAGGCATCATTTCGCCAAAGACGGTTTATTTATACAATCAGCTTGGACAAGAAGGTCTCGAGGGGAGGCTGCGAAGCGACCAAACAAGAAATCATGGAAACAAAGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTTTTTTCGAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACTAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTTAGAAACAGTCTACCATCCCTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATTTCGTATGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAAATTGGCATTGTTATTGATACCATTAAGGAGAACGGGATCATGTTTGTACCTTGA

Protein sequence

MLWCWTVKSRKLRAIARENFILFPLGNSVYKCCSNGGVKGDPRTGKIASILCAVCPWTNPCVQQRHHFAKDGLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

Homology

[Close]

BLAST of ClCG11G008640 vs. Swiss-Prot
Match: RL18_AROAE (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) GN=rplR PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 1


Query: 81  RRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKD 140
           RR+R   AK    KS +           L VF +   I+A+V+    S+V++ A+T   D
Sbjct: 9   RRARKTRAKIAELKSVR-----------LTVFRTNSHIYAQVIDGSGSRVLAAASTVEAD 68

Query: 141 LRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIM 200
           +R+ LP+  +  A +V+GKLIAER+K A V A++++ R   +  G++  + +  +E G+ 
Sbjct: 69  VRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFD-RAGFQYHGRVKALAEAAREGGLK 117

Query: 201 F 202
           F
Sbjct: 129 F 117

[Close]

BLAST of ClCG11G008640 vs. Swiss-Prot
Match: RL18_PETMO (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-08
Identity = 35/121 (28.93%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 89  KRPNKKSWKQRTDMYMRPFL--------LNVFFSKKFIHAKVMHRGTSKVISVATTNAKD 148
           K+ +KK+ +Q+  + +R  +        L VF S+K I+A+++       ++ A+T  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 149 LRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIM 202
           L+  L    D NA + +GKLIAE++KE  +  I ++ R   +  GK+  + +  +E G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFD-RSGYKYHGKVKALAEAARETGLK 122

[Close]

BLAST of ClCG11G008640 vs. Swiss-Prot
Match: RL18_RHILW (50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplR PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 1


Query: 83  SRGEA-AKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDL 142
           SR EA A+R N+     ++    RP  L+V  S K I+A+V+     K ++ A+T  KDL
Sbjct: 3   SRKEALARRANRVRRHLKSVANGRP-RLSVHRSSKNIYAQVIDDVAGKTLAAASTLDKDL 62

Query: 143 RNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMF 202
           R SL +  D  A  ++GKL+AER+ +A V  + ++ R      G+I  + D  +E G+ F
Sbjct: 63  RGSLKTGADTAAAALVGKLVAERASKAGVTDVVFD-RGAFIYHGRIKALADAAREGGLTF 120

[Close]

BLAST of ClCG11G008640 vs. Swiss-Prot
Match: RL18_METC4 (50S ribosomal protein L18 OS=Methylobacterium extorquens (strain CM4 / NCIMB 13688) GN=rplR PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 109 LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEA 168
           L+VF S K I+ +V+     + ++ A++  KDL++SL +  D  A   +GKL+AER+K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 169 DVYAISYEPRKDERIEGKIGIVIDTIKENGIMF 202
            V  + ++ R      G++  + D  +E G+ F
Sbjct: 89  GVTKVVFD-RSGYIFHGRVKALADAAREGGLDF 120

[Close]

BLAST of ClCG11G008640 vs. Swiss-Prot
Match: RL18_METEP (50S ribosomal protein L18 OS=Methylobacterium extorquens (strain PA1) GN=rplR PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 109 LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEA 168
           L+VF S K I+ +V+     + ++ A++  KDL++SL +  D  A   +GKL+AER+K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 169 DVYAISYEPRKDERIEGKIGIVIDTIKENGIMF 202
            V  + ++ R      G++  + D  +E G+ F
Sbjct: 89  GVTKVVFD-RSGYIFHGRVKALADAAREGGLDF 120

[Close]

BLAST of ClCG11G008640 vs. TrEMBL
Match: I3SRZ1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.8e-62
Identity = 118/156 (75.64%), Postives = 141/156 (90.38%), Query Frame = 1


Query: 47  IASILCAVCPWTNPCVQQRHHFAKDGLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRP 106
           + +I  +  P  +P + + +    +G F+++AWTRRSRGEAAKRPN+KSWKQRTDMYMRP
Sbjct: 47  LTNISFSPSPSPSPLLLRTNPSLFNGSFVRAAWTRRSRGEAAKRPNRKSWKQRTDMYMRP 106

Query: 107 FLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSK 166
           FLLNVFFSK+FIHAKVMHRGTSKVISVATTN+KDLRNSLPSLTDH+ACRV+G+LIA+RSK
Sbjct: 107 FLLNVFFSKRFIHAKVMHRGTSKVISVATTNSKDLRNSLPSLTDHDACRVVGRLIAQRSK 166

Query: 167 EADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFV 203
           EADVYA++YEPRKDERIEGK+GIV+DTIKENGI+FV
Sbjct: 167 EADVYALAYEPRKDERIEGKLGIVLDTIKENGIIFV 202

[Close]

BLAST of ClCG11G008640 vs. TrEMBL
Match: A0A061EAU7_THECC (Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_011555 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.6e-62
Identity = 117/131 (89.31%), Postives = 129/131 (98.47%), Query Frame = 1


Query: 72  GLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 131
           G F+Q+AWTRRSRGEAAK+PN+KSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 59  GSFVQAAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 118

Query: 132 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVI 191
           SVATTNAKDLRN+LPSLTDHNACR+IGKLIAERSK+ADVYA+SY+PRK ERIEGK+GIV+
Sbjct: 119 SVATTNAKDLRNTLPSLTDHNACRIIGKLIAERSKDADVYAMSYDPRKGERIEGKLGIVL 178

Query: 192 DTIKENGIMFV 203
           DTIKENGI+FV
Sbjct: 179 DTIKENGIIFV 189

[Close]

BLAST of ClCG11G008640 vs. TrEMBL
Match: A0A0D2NCT4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G145200 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.0e-62
Identity = 118/131 (90.08%), Postives = 128/131 (97.71%), Query Frame = 1


Query: 72  GLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 131
           G F+Q+AWTRRSRGEAAK+PN+KSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 59  GPFVQAAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 118

Query: 132 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVI 191
           SVATTNAKDLRN+L SLTDHNACR+IGKLIAERSKEADVYA+SYEPRK ERIEGK+GIV+
Sbjct: 119 SVATTNAKDLRNNLASLTDHNACRIIGKLIAERSKEADVYAMSYEPRKGERIEGKLGIVL 178

Query: 192 DTIKENGIMFV 203
           DTIKENGI+FV
Sbjct: 179 DTIKENGIIFV 189

[Close]

BLAST of ClCG11G008640 vs. TrEMBL
Match: A0A0B0MID5_GOSAR (50S ribosomal L18 OS=Gossypium arboreum GN=F383_17619 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.8e-61
Identity = 118/131 (90.08%), Postives = 127/131 (96.95%), Query Frame = 1


Query: 72  GLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 131
           G F+Q+AWTRRSRGEAAK+PN+KSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 59  GPFVQAAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 118

Query: 132 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVI 191
           SVATTNAKDLRN+L SLTDHNACR IGKLIAERSKEADVYA+SYEPRK ERIEGK+GIV+
Sbjct: 119 SVATTNAKDLRNNLASLTDHNACRTIGKLIAERSKEADVYAMSYEPRKGERIEGKLGIVL 178

Query: 192 DTIKENGIMFV 203
           DTIKENGI+FV
Sbjct: 179 DTIKENGIIFV 189

[Close]

BLAST of ClCG11G008640 vs. TrEMBL
Match: B9IQG4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11030g PE=4 SV=2)

HSP 1 Score: 243.4 bits (620), Expect = 2.3e-61
Identity = 116/129 (89.92%), Postives = 127/129 (98.45%), Query Frame = 1


Query: 74  FIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISV 133
           FIQ+AWTRRSRGE AK+PNKKSWKQRTDMYMRPFLLNVFFS++FI AKVMHRGTSKV+SV
Sbjct: 77  FIQAAWTRRSRGELAKKPNKKSWKQRTDMYMRPFLLNVFFSRRFIQAKVMHRGTSKVVSV 136

Query: 134 ATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDT 193
           ATTNAKDLR+SLPSLTDHNACR++GKLIAERSKEADVYA+SYEPRKDERIEGK+GIVIDT
Sbjct: 137 ATTNAKDLRHSLPSLTDHNACRIVGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDT 196

Query: 194 IKENGIMFV 203
           IKENGI+FV
Sbjct: 197 IKENGIIFV 205

[Close]

BLAST of ClCG11G008640 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 231.9 bits (590), Expect = 3.6e-61
Identity = 111/134 (82.84%), Postives = 123/134 (91.79%), Query Frame = 1


Query: 70  KDGLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSK 129
           K   F+Q+AWTRRSRGEAAKRPN+KSWKQRTDMYMRPFLLNVFFS+KFIHAKVMHR TSK
Sbjct: 54  KKDSFVQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSK 113

Query: 130 VISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGI 189
           VISVATTNA+D+R ++PSL D+ ACR+IGKLIAERS EADVYA+SYEPRK ERIEGK+GI
Sbjct: 114 VISVATTNARDIRTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGI 173

Query: 190 VIDTIKENGIMFVP 204
           VIDTIKE+GI+FVP
Sbjct: 174 VIDTIKEHGIIFVP 187

[Close]

BLAST of ClCG11G008640 vs. TAIR10
Match: AT1G08845.2 (AT1G08845.2 Ribosomal L18p/L5e family protein)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-24
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 1


Query: 88  AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLP 147
           +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L 
Sbjct: 115 SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 174

Query: 148 SLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGI 200
           S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGKI  V+ ++ +NGI
Sbjct: 175 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of ClCG11G008640 vs. TAIR10
Match: AT3G22450.1 (AT3G22450.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 88.6 bits (218), Expect = 4.9e-18
Identity = 42/111 (37.84%), Postives = 71/111 (63.96%), Query Frame = 1


Query: 89  KRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSL 148
           KR    ++ Q T  +  PF L+++ SK+ + A V+HR TSKV++VA + +KD++  L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 149 TDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGI 200
            +  AC  +G ++A+RS E D++ + Y PRK ++IEGK+ +V+  + +NG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of ClCG11G008640 vs. TAIR10
Match: AT5G27820.1 (AT5G27820.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-14
Identity = 34/97 (35.05%), Postives = 60/97 (61.86%), Query Frame = 1


Query: 103 YMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIA 162
           Y++P++L + F+ KF+HA+V+H  T+ V   A++  K LR ++    D  A   IGK++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 163 ERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGI 200
           ER    D+ A++ + +K++R  GK+  VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

[Close]

BLAST of ClCG11G008640 vs. NCBI nr
Match: gi|659081085|ref|XP_008441144.1| (PREDICTED: uncharacterized protein LOC103485371 [Cucumis melo])

HSP 1 Score: 258.8 bits (660), Expect = 7.7e-66
Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 1


Query: 73  LFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVIS 132
           LFIQSAWTRRSR EAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVIS
Sbjct: 60  LFIQSAWTRRSREEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVIS 119

Query: 133 VATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVID 192
           VATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDE+IEGK+GIVID
Sbjct: 120 VATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDEKIEGKLGIVID 179

Query: 193 TIKENGIMFVP 204
           TIKENGIMFVP
Sbjct: 180 TIKENGIMFVP 190

[Close]

BLAST of ClCG11G008640 vs. NCBI nr
Match: gi|388509934|gb|AFK43033.1| (unknown [Lotus japonicus])

HSP 1 Score: 246.5 bits (628), Expect = 4.0e-62
Identity = 118/156 (75.64%), Postives = 141/156 (90.38%), Query Frame = 1


Query: 47  IASILCAVCPWTNPCVQQRHHFAKDGLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRP 106
           + +I  +  P  +P + + +    +G F+++AWTRRSRGEAAKRPN+KSWKQRTDMYMRP
Sbjct: 47  LTNISFSPSPSPSPLLLRTNPSLFNGSFVRAAWTRRSRGEAAKRPNRKSWKQRTDMYMRP 106

Query: 107 FLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSK 166
           FLLNVFFSK+FIHAKVMHRGTSKVISVATTN+KDLRNSLPSLTDH+ACRV+G+LIA+RSK
Sbjct: 107 FLLNVFFSKRFIHAKVMHRGTSKVISVATTNSKDLRNSLPSLTDHDACRVVGRLIAQRSK 166

Query: 167 EADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFV 203
           EADVYA++YEPRKDERIEGK+GIV+DTIKENGI+FV
Sbjct: 167 EADVYALAYEPRKDERIEGKLGIVLDTIKENGIIFV 202

[Close]

BLAST of ClCG11G008640 vs. NCBI nr
Match: gi|590699289|ref|XP_007045886.1| (Ribosomal L18p/L5e family protein [Theobroma cacao])

HSP 1 Score: 246.1 bits (627), Expect = 5.2e-62
Identity = 117/131 (89.31%), Postives = 129/131 (98.47%), Query Frame = 1


Query: 72  GLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 131
           G F+Q+AWTRRSRGEAAK+PN+KSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 59  GSFVQAAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 118

Query: 132 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVI 191
           SVATTNAKDLRN+LPSLTDHNACR+IGKLIAERSK+ADVYA+SY+PRK ERIEGK+GIV+
Sbjct: 119 SVATTNAKDLRNTLPSLTDHNACRIIGKLIAERSKDADVYAMSYDPRKGERIEGKLGIVL 178

Query: 192 DTIKENGIMFV 203
           DTIKENGI+FV
Sbjct: 179 DTIKENGIIFV 189

[Close]

BLAST of ClCG11G008640 vs. NCBI nr
Match: gi|1021510519|ref|XP_016198547.1| (PREDICTED: 50S ribosomal protein L18 [Arachis ipaensis])

HSP 1 Score: 245.4 bits (625), Expect = 8.8e-62
Identity = 117/143 (81.82%), Postives = 132/143 (92.31%), Query Frame = 1


Query: 60  PCVQQRHHFAKDGLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIH 119
           P +    H ++   FIQ+AWTRRSR EAAK+PN+KSWKQRTDMYMRPFLLNVFFSK+FIH
Sbjct: 52  PSLHLHTHLSEGCSFIQAAWTRRSRSEAAKKPNRKSWKQRTDMYMRPFLLNVFFSKRFIH 111

Query: 120 AKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRK 179
           AKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRV+G+LIAERSKEADVYA++YEPR 
Sbjct: 112 AKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVVGRLIAERSKEADVYALAYEPRN 171

Query: 180 DERIEGKIGIVIDTIKENGIMFV 203
           +ERIEGK+GIVIDTIKENG++FV
Sbjct: 172 NERIEGKLGIVIDTIKENGVIFV 194

[Close]

BLAST of ClCG11G008640 vs. NCBI nr
Match: gi|823157755|ref|XP_012478759.1| (PREDICTED: uncharacterized protein LOC105794236 [Gossypium raimondii])

HSP 1 Score: 245.0 bits (624), Expect = 1.2e-61
Identity = 118/131 (90.08%), Postives = 128/131 (97.71%), Query Frame = 1


Query: 72  GLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 131
           G F+Q+AWTRRSRGEAAK+PN+KSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 59  GPFVQAAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 118

Query: 132 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVI 191
           SVATTNAKDLRN+L SLTDHNACR+IGKLIAERSKEADVYA+SYEPRK ERIEGK+GIV+
Sbjct: 119 SVATTNAKDLRNNLASLTDHNACRIIGKLIAERSKEADVYAMSYEPRKGERIEGKLGIVL 178

Query: 192 DTIKENGIMFV 203
           DTIKENGI+FV
Sbjct: 179 DTIKENGIIFV 189

The following BLAST results are available for this feature:

BLAST of ClCG11G008640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL18_AROAE	2.5e-08	32.23	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) GN=rplR PE=3 S...	[more]
RL18_PETMO	9.6e-08	28.93	50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR...	[more]
RL18_RHILW	1.1e-06	35.00	50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM230...	[more]
RL18_METC4	1.4e-06	32.26	50S ribosomal protein L18 OS=Methylobacterium extorquens (strain CM4 / NCIMB 136...	[more]
RL18_METEP	1.4e-06	32.26	50S ribosomal protein L18 OS=Methylobacterium extorquens (strain PA1) GN=rplR PE...	[more]

BLAST of ClCG11G008640 vs. TrEMBL


Match Name	E-value	Identity	Description
I3SRZ1_LOTJA	2.8e-62	75.64	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A061EAU7_THECC	3.6e-62	89.31	Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_011555 PE=4 SV=1	[more]
A0A0D2NCT4_GOSRA	8.0e-62	90.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G145200 PE=4 SV=1	[more]
A0A0B0MID5_GOSAR	1.8e-61	90.08	50S ribosomal L18 OS=Gossypium arboreum GN=F383_17619 PE=4 SV=1	[more]
B9IQG4_POPTR	2.3e-61	89.92	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11030g PE=4 SV=2	[more]

BLAST of ClCG11G008640 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20230.1	3.6e-61	82.84	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	1.6e-24	48.67	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	4.9e-18	37.84	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	3.3e-14	35.05	Ribosomal L18p/L5e family protein	[more]

BLAST of ClCG11G008640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081085\|ref\|XP_008441144.1\|	7.7e-66	97.71	PREDICTED: uncharacterized protein LOC103485371 [Cucumis melo]	[more]
gi\|388509934\|gb\|AFK43033.1\|	4.0e-62	75.64	unknown [Lotus japonicus]	[more]
gi\|590699289\|ref\|XP_007045886.1\|	5.2e-62	89.31	Ribosomal L18p/L5e family protein [Theobroma cacao]	[more]
gi\|1021510519\|ref\|XP_016198547.1\|	8.8e-62	81.82	PREDICTED: 50S ribosomal protein L18 [Arachis ipaensis]	[more]
gi\|823157755\|ref\|XP_012478759.1\|	1.2e-61	90.08	PREDICTED: uncharacterized protein LOC105794236 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008097	5S rRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G008640.1	ClCG11G008640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 101..201 score: 1.1
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 106..201 score: 1.3
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 70..202 score: 1.0E
None	No IPR available	PANTHER	PTHR12899:SF7	SUBFAMILY NOT NAMED	coord: 70..202 score: 1.0E
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 103..199 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G008640	MELO3C008070	Melon (DHL92) v3.5.1	mewcgB269
ClCG11G008640	Cla97C11G215000	Watermelon (97103) v2	wcgwmbB067
ClCG11G008640	Bhi04G002083	Wax gourd	wcgwgoB159
ClCG11G008640	CmaCh15G000050	Cucurbita maxima (Rimu)	cmawcgB250
ClCG11G008640	CmoCh04G031570	Cucurbita moschata (Rifu)	cmowcgB633
ClCG11G008640	CmoCh15G000040	Cucurbita moschata (Rifu)	cmowcgB238
ClCG11G008640	Lsi11G010010	Bottle gourd (USVL1VR-Ls)	lsiwcgB079
ClCG11G008640	Cp4.1LG13g11770	Cucurbita pepo (Zucchini)	cpewcgB162
ClCG11G008640	Cp4.1LG01g26190	Cucurbita pepo (Zucchini)	cpewcgB367
ClCG11G008640	Carg06108	Silver-seed gourd	carwcgB0023
ClCG11G008640	Carg27300	Silver-seed gourd	carwcgB0303

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G008640	Wild cucumber (PI 183967)	cpiwcgB103
ClCG11G008640	Cucumber (Chinese Long) v2	cuwcgB097
ClCG11G008640	Watermelon (97103) v1	wcgwmB104
ClCG11G008640	Bottle gourd (USVL1VR-Ls)	lsiwcgB088
ClCG11G008640	Cucumber (Gy14) v2	cgybwcgB095
ClCG11G008640	Melon (DHL92) v3.6.1	medwcgB260
ClCG11G008640	Cucumber (Chinese Long) v3	cucwcgB113
ClCG11G008640	Cucumber (Gy14) v1	cgywcgB097