Cp4.1LG01g26190 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g26190
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description50S ribosomal L18
LocationCp4.1LG01 : 21304483 .. 21310678 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAATGAACCAATGATGTAAGGAAAATCAAATCAACTCTGGACGGCGATTTCGAGGCGGCCGAACCTGGTTCACTCACATCACAGCAATTTCACAATCCACGCATTCCCACACGTCACCGGTTATCCAAACCTACTTTTTTTTTTCAATAATTCACGGCCGTCTTTACTCCTTTGCTTACTGCTCTGCTCCGAGCCTGCGTCGGGGATAAAATTTAGCTGTCTTGTTTCATTATTGTGTGAAACTTATAAATACCCTTTGCCGGTCTGATTGCTCTCTCCCCATCTGCCATCTGAATAAGCTTGTGCAACACACCGAGAAAGGAGCAACGTCAAAGCAAAATGGGTGATAACAACAATGAGGCGTCTGCGCAAGCTCCCTCCATTCCTCTCCTCACTCCGTACAAGATGGGGAAGTTTAATCTTTCTCACAGGTACATGTTGTCTTACAAGTATCATCTAATTGCAAAATCAATAACAACAGCTTGTGTTGCTTGGAATTGGATAACCCTGTTTCCTCATATCTTCCTCACAATAATTGTTCTTCAGAATTGTGTTGGCCCCATTGACAAGGCAGAGATCTTACAACAATGTTCCTCAGCAGCATGCCATCTTATATTACTCTCAGAGAACCACGAAAGGGGGTTTCTTAATAGCTGAGGCCACTGGAGTTTCTGACACTGCCCAAGGGTAATAGCCTTCCTTTTCTTTCCCCTTATTCTCATAAAAAACCTCTTGCTTCCCAACTAATCCGTTTCTGTGTTCTAACGTGTAAGATATCCTGATACACCTGGGATATGGACGAAAGAGCAAGTTGAAGCATGGAAACCAATTGTGGATGCTGTCCATCGCAAAGGCGGTACATTCTTTTGCCAGATATGGCATGTTGGGAGGGTTTCAAATTCAGGTGCGTTTTCTTTACCGCAAATAGGAATAACAAGAAGAAAGGTTGGTAAATTATAAGAACATATCAATTGGAACAACACAATCAAGTGGATAACTGTAGATTGAATTTTGCACTGGATAAAGNTACCGCAAATAGGAATAACAAGAAGAAAGGTTGGTAAATTATAAGACCATATCAATTGGAACAACAGAATCAAGTGGATAACTGTAGATTGAATTTTGCACTGGATAAAGCATACAGTATCTATGAGGTTTCTGATCAGTTCCCATTTTTTTTTTCATGATTCTGCACCCATTATAAAACCTTTCCATCCTCACTTTTACGAGCATTTAAGTTTTGAAAAAAAAAAAAAAAAACAGCTGAANAGTGGATAACTGTAGATTGAATTTTGCACTGGATAAAGCATACAGTATCTATGAGGTTTCTGATCAGTTCCCATTTTTTTTTTCATGATTCTGCACCCATTATAAAACCTTTCCATCCTCACTTTTACGAGCATTTAAGTTTAAAAAAAAAAAAAAAAAATACAGCTGAAGCAATCAACTTCGTTCTGAACTATGTAAAGAACAAATTTGCAGTGTCAAATCTGGAGGAGGGTGTTACCGTACATGATTTAGTAGTAGAGAATTTATGAGATTGCAATGAATCATAGGAATGAAATCCTTAGTTTTAAAGTTACAAATCTCTGAGTTAACATTTATTTTAAAAATACGCCTCCACTGTGGCTATATATTTTCTGATGCATGTAGGTTTTCAACCAAATGGACAAGCCCCAATCTCATCATCGGACAGGCCACTACTCCCGCAAGTTCGGGCTGATGGAATTGATGTTGCACAGTTCACTCCTCCAAGACGTCTAAGGACAGATGAAATCCCTCAAATTGTCAATGATTTTAGGGTTGCAGCCAGGAATGCCATTGAAGCTGGTCAGTCCTATTTTCAGAAAACTAACGGAACTCCTGCCATGATTACTGATTAAGACTCAAAAATCAGTAGCTTGTTTAGGCTAGAAACAATGGAGGATGAAATGAATTTATTATTCAATATGTTTTTTGCTATGGTTGAATGATTATACAGGTTTTGATGGAGTTGAAATCCATGGAGCTCATGGTTATCTTATCGATCAGTTCATGAAAGACAGTGTGAACGACCGTACGGACCAATATGGTGGCTCTCTGGAAAACCGTTGCAGATTTGGTCTAGAAGTAGTTGAAGCTGTGGTAAACGAGATAGGCGGAGACAGAGTTGGGATAAGACTATCGCCTTTTGCAGATTACATGGAGGCGGGAGATTCAAATCCAAAAGCTCTGGGAGTGTACATGGCGGAGAGTTTGAACAAATATGGAATTTTGTACTGTCACATGGTGGAGCCACGGATGAAAAATGTTCTGGAGAAAGTTGAATGTCCACACAGCCTGTTACCAATGAGAAAGGCATTCCGGGGTACATTCATAGCTGCTGGAGGGTTTGATAAGGAAGATGGAAATAGAGCCATTGCTGAAAATGGAGCAGATCTTATTGCTTATGGCCGTTGGTTTTTAGCAAATCCAGACCTGCCAAGGAGATTCCAGATAGATGCTCCTCTCAACAACTACAAAAGAGACACCTTTTACGCATCCGATCCGGTGGTTGGTTACACAGACTATCCCTTTCTTGAAGACTAGCAATTCTTCAGACTGTACGCAGTAAAAAAATTAGTTGGGGCAGAACCAAACTTTTACTGCTGGCTCACAAAAGTAGTTTCATTTCAATAATGATGAAGATCTTCAATATTCTTGTAATCTCAAATAATTGTACTTCTCAAGTTAAGAGTAAAATATCACCCTCACCCCTTTATAAATCTTTCAAAAATAAAACTATTATTTGAGTAGAAATCTTTTCAAGTATTAAAAAAAATGGACATGACAATTATATTTTTCTATTAAAATAATTTTGAAATACTTAAAAAGGTAATATTATATTATAGCTCTTTCATATTTAACCTTAACATTACAATGAGGCGGTAAGGTTTGCACTATTTTTTTTGGTAACAAAATAGTAATTGCATCAAAATAACCCTTTTTAAGCCTTTAACACTTACCCATCTATTTGTTTTATTTTTTTCCTTTTTTCTTTCGGAAAGAAGCTTCGGACTTCTACCGCGAGCGTCGTAAATTGAGCACTTCCACCAAAGAAGTCGTGGGTGGACGAATGAACTGAATCTGAACCATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTCTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCTTCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGGTAAAATTTCTTTACTGGCAGCCTATTCAATTCCCTGTTTATTCCGGAGGATATCTTATTTCCATTTTTAAGTTTATGATTTATCTGTTGTGGACCACGAATTTCTTGCACATGTACTTGGTTTTTATATGAAAAAATTCTGGAACTAACAAATTTACAAAGGCAAAACAAGTTGCTTTGATTATTCTTAAAAATTTTGGCTATTTTCTCTATTGTTGTTCACTTTTATTGGGATAAGTTATGTGAAAATCTAGTTTCAGAAAAATCGATTGGTATAGGAATGGAATCAAAATAAACGGAAACCTGAAACCTGAAACACTAGTGCAAAAGTTGGGGAAGGAGAATTATCTGTGAGGAAGTTATCTGTTGTGGATTTGCTGCCAGTTATGTATTCAAGCCAATGGACAATACGAACTCGACTATATTGTAACTTTCATAAAACTTGCTCTTCAGGATATGGTTTGAGAATTTGAAAGAATACTGCCGGCAGTCATCTTTAAGTGAATAGTCGTGCTGTTATTATAGCTGGAAAAGAAAAAAATGACTATTACATTGTATACAGAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAAATGGCTTTATTGCTGTTGCTGGGCAGTTCTCCAGTTCCGTATCTTTCAAATTCTTCATTTTCTACCTTGTATTTAAATTGAGCTTGGAATTGATGACAACATTTCAGATTTAGAATAAATACACTTGAGCCGTTTTGAACCCATGACCACTTGGTTAAACCTGGGAGAAGTTCCCTAAGTTGAAATCCTCGGACACATCTTGGTTATATTAGCAACTTACTGACTTGAGCAACATTCAGGAAGATTTGCATTGAACGAAGTATAACATCTGTCTTTTTGAAGAATTGGAATAGAAAAGCCCCCTTTGGTGGCAATGCTGTTATGGACGCGGCTTTCATCACAGTTTTTTTCCTTGGTCTATATCATATTATTGGTTCAAAAGTTTGTTGCTATCTGGAAAGCTTGGGTACAGGGTCCAACACTTGCGCAGCCTGTGATTATGAGGCTTACTAGCAGCTACATGGATAATAGGATGTAGAGCAACCAAACCATTTGGAGTAGAAGCAATAATAAATAGCCGAGGATAGCAAGGCTTTATAGAAGGTTAGATAACCAAAGATCTTTCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCTGAATGCCAATCATTAATGTTAGACCCATGAATACTAGCAATAACCTGTTGCCAACAAGAAGAAGGTTCAGTTATAAAACACCAACCTCATTATGCTATCAAAGCCAAATTCCTGTTTTCAATGCTCCTATTTCAAGACCGCCATCATTCTGAGCTTTTGTAACAATTCTCCATCGAACCAAATGAGTTACTTTCCCTCCTTCCTTTCCTCTCAAAGAAAAATTGAAGAAGTCTTTTGAACTCCACTCTAACCAAAGACCATAAGAACTAAAGACATATAATAAGGCCTTCCCTAGATAGAGTAAAGCGCTTCCATCTATCAATCATCAGAATCTATTATACCATAGGATAAGAGTTCCTGCTTTTCGTAATGATTGGAAGAAGGAATGACAACTCCTTTAATCAAAGCAGTTCCTGAATCACAAGGAGCAGTTAATGTTTGACTACAAGGTATGGAAGAGAACGTCTTTGGATCTTCACTTGTATCCAAACAGAGTTTAAGAGAAGAGGAGCCCAAGAGTCGCAAACAACCTTCTTCAACATCTGGATTGATTAAAGAAACTTCTGGAAAAATTATAAAAGAAGCAACCATTTATTTTTTCCGAGAATATTGAAGAGGGTGAGATTCCTTTGATCTCCTTAAATCAATTTAGTACCATGAGGGCTGAGAATCTCTGTACGGGAAGGATTCGAATGCGAAACATTCTTGGCAATAGGCGAAACCTCTTGAACTGGAACGGAAGCATTAACTACAGGGGGAACTGTAGGAAAACCGGCCTCAAGAGACGTCTTCATTAATGGCGTTGGCTGAACTGAAACGTTATCAAGGGAATTCCGTTCGTCTCATTAAAGGGCTGTAATAAAGATTGAATGCCTTACAAGAGTCTTCTCCGGGCAACGAGGCAACTTCTTTTGGAGTGAGTAACGCCTCTGATGGAACGAGGCAACTTATTTTGCTAAAATCTGTCTGCACCACCTCCTATTTTTTCTAATCCAAAAAGATTTGAGTCGTAAGTAAAGTCTTACAAGAATCCGTAAAAACGACGCTGACCTTCCAATTCATCTTTACATCATTCTTATAACTATTAATAGATGAAGTAACTTTTCCAATATCCAATTTCTTTAGGGAAGCTGAATTTGGTGAGCACTCCTGCTGCACTTCAGAGAATCTTTTACTGTTTTAAGAGAGTCGAGTAACTTTTAAATTTTGTTTTCTTTTGATAAACGACCAGTATGTTTACACTTGTAGGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCGGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATACCATTAAGGAGAACGGGATCATGTTTGTACCTTGA

mRNA sequence

TGAATGAACCAATGATGTAAGGAAAATCAAATCAACTCTGGACGGCGATTTCGAGGCGGCCGAACCTGGTTCACTCACATCACAGCAATTTCACAATCCACGCATTCCCACACGTCACCGGTTATCCAAACCTACTTTTTTTTTTCAATAATTCACGGCCGTCTTTACTCCTTTGCTTACTGCTCTGCTCCGAGCCTGCGTCGGGGATAAAATTTAGCTGTCTTGTTTCATTATTGTGTGAAACTTATAAATACCCTTTGCCGGTCTGATTGCTCTCTCCCCATCTGCCATCTGAATAAGCTTGTGCAACACACCGAGAAAGGAGCAACGTCAAAGCAAAATGGGTGATAACAACAATGAGGCGTCTGCGCAAGCTCCCTCCATTCCTCTCCTCACTCCGTACAAGATGGGGAAGTTTAATCTTTCTCACAGAATTGTGTTGGCCCCATTGACAAGGCAGAGATCTTACAACAATGTTCCTCAGCAGCATGCCATCTTATATTACTCTCAGAGAACCACGAAAGGGGGTTTCTTAATAGCTGAGGCCACTGGAGTTTCTGACACTGCCCAAGGATATCCTGATACACCTGGGATATGGACGAAAGAGCAAGTTGAAGCATGGAAACCAATTGTGGATGCTGTCCATCGCAAAGGCGGTACATTCTTTTGCCAGATATGGCATGTTGGGAGGGTTTCAAATTCAGGTTTTCAACCAAATGGACAAGCCCCAATCTCATCATCGGACAGGCCACTACTCCCGCAAGTTCGGGCTGATGGAATTGATGTTGCACAGTTCACTCCTCCAAGACGTCTAAGGACAGATGAAATCCCTCAAATTGTCAATGATTTTAGGGTTGCAGCCAGGAATGCCATTGAAGCTGGTTTTGATGGAGTTGAAATCCATGGAGCTCATGGTTATCTTATCGATCAGTTCATGAAAGACAGTGTGAACGACCGTACGGACCAATATGGTGGCTCTCTGGAAAACCGTTGCAGATTTGGTCTAGAAGTAGTTGAAGCTGTGGTAAACGAGATAGGCGGAGACAGAGTTGGGATAAGACTATCGCCTTTTGCAGATTACATGGAGGCGGGAGATTCAAATCCAAAAGCTCTGGGAGTGTACATGGCGGAGAGTTTGAACAAATATGGAATTTTGTACTGTCACATGGTGGAGCCACGGATGAAAAATGTTCTGGAGAAAGTTGAATGTCCACACAGCCTGTTACCAATGAGAAAGGCATTCCGGGGTACATTCATAGCTGCTGGAGGGTTTGATAAGGAAGATGGAAATAGAGCCATTGCTGAAAATGGAGCAGATCTTATTGCTTATGGCCGTTGGTTTTTAGCAAATCCAGACCTGCCAAGGAGATTCCAGATAGATGCTCCTCTCAACAACTACAAAAGAGACACCTTTTACGCATCCGATCCGGTGGTTGGTTACACAGACTATCCCTTTCTTGAAGACTAGCAATTCTTCAGACTGTACGCAGTAAAAAAATTAGTTGGGGCAGAACCAAACTTTTACTGCTGGCTCACAAAAGTAGTTTCATTTCAATAATGATGAAGATCTTCAATATTCTTGTAATCTCAAATAATTGTACTTCTCAAGTTAAGAGTAAAATATCACCCTCACCCCTTTATAAATCTTTCAAAAATAAAACTATTATTTGAGTAGAAATCTTTTCAAGTATTAAAAAAAATGGACATGACAATTATATTTTTCTATTAAAATAATTTTGAAATACTTAAAAAGGTAATATTATATTATAGCTCTTTCATATTTAACCTTAACATTACAATGAGGCGGTAAGGTTTGCACTATTTTTTTTGGTAACAAAATAGTAATTGCATCAAAATAACCCTTTTTAAGCCTTTAACACTTACCCATCTATTTGTTTTATTTTTTTCCTTTTTTCTTTCGGAAAGAAGCTTCGGACTTCTACCGCGAGCGTCGTAAATTGAGCACTTCCACCAAAGAAGTCGTGGGTGGACGAATGAACTGAATCTGAACCATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTCTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCTTCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCGGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATACCATTAAGGAGAACGGGATCATGTTTGTACCTTGA

Coding sequence (CDS)

ATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTCTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCTTCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCGGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATACCATTAAGGAGAACGGGATCATGTTTGTACCTTGA

Protein sequence

MAFTAISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNPAHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGIMFVP
Homology
[Close]
BLAST of Cp4.1LG01g26190 vs. Swiss-Prot
Match: RL18_AROAE (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) GN=rplR PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-07
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 1 

Query: 74  RRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKD 133
           RR+R   AK    KS +           L VF +   I+A+V+    S+V++ A+T   D
Sbjct: 9   RRARKTRAKIAELKSVR-----------LTVFRTNSHIYAQVIDGSGSRVLAAASTVEAD 68

Query: 134 LRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGIM 193
           +R+ LP+  +  A +V+GKLIAER+K A V A++++ R   +  G++  + +  +E G+ 
Sbjct: 69  VRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFD-RAGFQYHGRVKALAEAAREGGLK 117

Query: 194 F 195
           F
Sbjct: 129 F 117

[Close]
BLAST of Cp4.1LG01g26190 vs. Swiss-Prot
Match: RL18_PETMO (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 34/121 (28.10%), Postives = 65/121 (53.72%), Query Frame = 1 

Query: 82  KRPNKKSWKQRTDMYMRPFL--------LNVFFSKKFIHAKVMHRGTSKVISVATTNAKD 141
           K+ +KK+ +Q+  + +R  +        L VF S+K I+A+++       ++ A+T  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 142 LRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGIM 195
           L+  L    D NA + +GKLIAE++KE  +  + ++ R   +  GK+  + +  +E G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFD-RSGYKYHGKVKALAEAARETGLK 122

[Close]
BLAST of Cp4.1LG01g26190 vs. Swiss-Prot
Match: RL18_METEP (50S ribosomal protein L18 OS=Methylobacterium extorquens (strain PA1) GN=rplR PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-06
Identity = 30/93 (32.26%), Postives = 53/93 (56.99%), Query Frame = 1 

Query: 102 LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEA 161
           L+VF S K I+ +V+     + ++ A++  KDL++SL +  D  A   +GKL+AER+K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 162 DVYAMSYEPRKDERIEGKLGIVIDTIKENGIMF 195
            V  + ++ R      G++  + D  +E G+ F
Sbjct: 89  GVTKVVFD-RSGYIFHGRVKALADAAREGGLDF 120

[Close]
BLAST of Cp4.1LG01g26190 vs. Swiss-Prot
Match: RL18_METC4 (50S ribosomal protein L18 OS=Methylobacterium extorquens (strain CM4 / NCIMB 13688) GN=rplR PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-06
Identity = 30/93 (32.26%), Postives = 53/93 (56.99%), Query Frame = 1 

Query: 102 LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEA 161
           L+VF S K I+ +V+     + ++ A++  KDL++SL +  D  A   +GKL+AER+K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 162 DVYAMSYEPRKDERIEGKLGIVIDTIKENGIMF 195
            V  + ++ R      G++  + D  +E G+ F
Sbjct: 89  GVTKVVFD-RSGYIFHGRVKALADAAREGGLDF 120

[Close]
BLAST of Cp4.1LG01g26190 vs. TrEMBL
Match: U5FXQ5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11310g PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 8.0e-67
Identity = 142/191 (74.35%), Postives = 166/191 (86.91%), Query Frame = 1 

Query: 6   ISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNPAHA-K 65
           ISSS  ++ S RS+LS+  I T ++ S K +S+SW SSFP+I++S     +++NP+   K
Sbjct: 5   ISSS--AALSTRSLLSTDSIPTQSSRSIKPNSISWVSSFPTINIS-----INNNPSSLNK 64

Query: 66  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 125
             FIQ+AWTRRSRGE  K+PNKKSWKQRT+MYM+PFLLNVFFS+KFI AKVMHRGTSKVI
Sbjct: 65  NSFIQAAWTRRSRGELEKKPNKKSWKQRTEMYMKPFLLNVFFSRKFIQAKVMHRGTSKVI 124

Query: 126 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI 185
           SVATTNAKDLR+SLPSLTDHNACR++GKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI
Sbjct: 125 SVATTNAKDLRHSLPSLTDHNACRIVGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI 184

Query: 186 DTIKENGIMFV 196
           DTIKENGI+FV
Sbjct: 185 DTIKENGIIFV 188

[Close]
BLAST of Cp4.1LG01g26190 vs. TrEMBL
Match: B9IQG4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11030g PE=4 SV=2)

HSP 1 Score: 260.4 bits (664), Expect = 1.8e-66
Identity = 138/184 (75.00%), Postives = 158/184 (85.87%), Query Frame = 1 

Query: 12  SSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNPAHAKVLFIQSA 71
           ++ S +S+LS+  + T +T S K +SLSW  SFP+I +S  +   SS     K  FIQ+A
Sbjct: 25  AALSTQSLLSADSLPTSSTRSIKPNSLSWGFSFPTIHISINNNHPSSLN---KTSFIQAA 84

Query: 72  WTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNA 131
           WTRRSRGE AK+PNKKSWKQRTDMYMRPFLLNVFFS++FI AKVMHRGTSKV+SVATTNA
Sbjct: 85  WTRRSRGELAKKPNKKSWKQRTDMYMRPFLLNVFFSRRFIQAKVMHRGTSKVVSVATTNA 144

Query: 132 KDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENG 191
           KDLR+SLPSLTDHNACR++GKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENG
Sbjct: 145 KDLRHSLPSLTDHNACRIVGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENG 204

Query: 192 IMFV 196
           I+FV
Sbjct: 205 IIFV 205

[Close]
BLAST of Cp4.1LG01g26190 vs. TrEMBL
Match: A0A0D2NCT4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G145200 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.0e-66
Identity = 144/190 (75.79%), Postives = 159/190 (83.68%), Query Frame = 1 

Query: 6   ISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNPAHAKV 65
           +S  + SSA     LSS    T +  S K +SLSWASSFPSI +S  S  +   P+  K 
Sbjct: 2   VSIIVSSSALPTRPLSS--FPTHSERSNKLTSLSWASSFPSIDISINSFTLPPAPSLNKG 61

Query: 66  LFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVIS 125
            F+Q+AWTRRSRGEAAK+PN+KSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVIS
Sbjct: 62  PFVQAAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVIS 121

Query: 126 VATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVID 185
           VATTNAKDLRN+L SLTDHNACR+IGKLIAERSKEADVYAMSYEPRK ERIEGKLGIV+D
Sbjct: 122 VATTNAKDLRNNLASLTDHNACRIIGKLIAERSKEADVYAMSYEPRKGERIEGKLGIVLD 181

Query: 186 TIKENGIMFV 196
           TIKENGI+FV
Sbjct: 182 TIKENGIIFV 189

[Close]
BLAST of Cp4.1LG01g26190 vs. TrEMBL
Match: A0A061EAU7_THECC (Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_011555 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.2e-66
Identity = 138/188 (73.40%), Postives = 158/188 (84.04%), Query Frame = 1 

Query: 8   SSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNPAHAKVLF 67
           +S+ SS+S     S     T +  + K +SLSW SSFPS ++S  S  +   P+  K  F
Sbjct: 2   ASVISSSSALPTRSLDSFPTHSERANKLTSLSWVSSFPSTNISINSFTLPPAPSLNKGSF 61

Query: 68  IQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVA 127
           +Q+AWTRRSRGEAAK+PN+KSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVA
Sbjct: 62  VQAAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVA 121

Query: 128 TTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTI 187
           TTNAKDLRN+LPSLTDHNACR+IGKLIAERSK+ADVYAMSY+PRK ERIEGKLGIV+DTI
Sbjct: 122 TTNAKDLRNTLPSLTDHNACRIIGKLIAERSKDADVYAMSYDPRKGERIEGKLGIVLDTI 181

Query: 188 KENGIMFV 196
           KENGI+FV
Sbjct: 182 KENGIIFV 189

[Close]
BLAST of Cp4.1LG01g26190 vs. TrEMBL
Match: A0A0B0MID5_GOSAR (50S ribosomal L18 OS=Gossypium arboreum GN=F383_17619 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.8e-66
Identity = 139/183 (75.96%), Postives = 153/183 (83.61%), Query Frame = 1 

Query: 13  SASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNPAHAKVLFIQSAW 72
           S+S     S     T +  S K +SLSW SSFPSI++S  S  +   P+  K  F+Q+AW
Sbjct: 7   SSSALPTRSLNSFPTHSERSNKLTSLSWTSSFPSINISINSFTLPPAPSLNKGPFVQAAW 66

Query: 73  TRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAK 132
           TRRSRGEAAK+PN+KSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAK
Sbjct: 67  TRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAK 126

Query: 133 DLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGI 192
           DLRN+L SLTDHNACR IGKLIAERSKEADVYAMSYEPRK ERIEGKLGIV+DTIKENGI
Sbjct: 127 DLRNNLASLTDHNACRTIGKLIAERSKEADVYAMSYEPRKGERIEGKLGIVLDTIKENGI 186

Query: 193 MFV 196
           +FV
Sbjct: 187 IFV 189

[Close]
BLAST of Cp4.1LG01g26190 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 242.3 bits (617), Expect = 2.5e-64
Identity = 131/186 (70.43%), Postives = 152/186 (81.72%), Query Frame = 1 

Query: 19  ILSSQCISTP----TTPSQK----SSSLSWASSFPSISLSRGSPFVSSNPAHAKVLFIQS 78
           ++SS C   P     T S +     S++SW SSFP +S+  GS  V S+P   K  F+Q+
Sbjct: 4   LISSTCSLVPFDSNLTRSNRFTKLGSAVSWQSSFPKLSIEIGS--VISSPIVKKDSFVQA 63

Query: 79  AWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTN 138
           AWTRRSRGEAAKRPN+KSWKQRTDMYMRPFLLNVFFS+KFIHAKVMHR TSKVISVATTN
Sbjct: 64  AWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTN 123

Query: 139 AKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKEN 197
           A+D+R ++PSL D+ ACR+IGKLIAERS EADVYA+SYEPRK ERIEGKLGIVIDTIKE+
Sbjct: 124 ARDIRTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEH 183

[Close]
BLAST of Cp4.1LG01g26190 vs. TAIR10
Match: AT1G08845.2 (AT1G08845.2 Ribosomal L18p/L5e family protein)

HSP 1 Score: 107.5 bits (267), Expect = 9.8e-24
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 1 

Query: 81  AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLP 140
           +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L 
Sbjct: 115 SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 174

Query: 141 SLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGI 193
           S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGK+  V+ ++ +NGI
Sbjct: 175 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]
BLAST of Cp4.1LG01g26190 vs. TAIR10
Match: AT3G22450.1 (AT3G22450.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-17
Identity = 43/111 (38.74%), Postives = 73/111 (65.77%), Query Frame = 1 

Query: 82  KRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSL 141
           KR    ++ Q T  +  PF L+++ SK+ + A V+HR TSKV++VA + +KD++  L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 142 TDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGI 193
            +  AC  +G ++A+RS E D++ + Y PRK ++IEGKL +V+  + +NG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]
BLAST of Cp4.1LG01g26190 vs. TAIR10
Match: AT5G27820.1 (AT5G27820.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 34/97 (35.05%), Postives = 62/97 (63.92%), Query Frame = 1 

Query: 96  YMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIA 155
           Y++P++L + F+ KF+HA+V+H  T+ V   A++  K LR ++    D  A   IGK++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 156 ERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGI 193
           ER    D+ A++ + +K++R  GK+  VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

[Close]
BLAST of Cp4.1LG01g26190 vs. NCBI nr
Match: gi|659081085|ref|XP_008441144.1| (PREDICTED: uncharacterized protein LOC103485371 [Cucumis melo])

HSP 1 Score: 318.9 bits (816), Expect = 6.1e-84
Identity = 171/196 (87.24%), Postives = 181/196 (92.35%), Query Frame = 1 

Query: 1   MAFTAISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60
           MAFTAI+SS+PS +SV    SSQ    P+TP QKSSSLSWASSFP +++ RGSPF SSNP
Sbjct: 1   MAFTAIASSLPSCSSV---FSSQ---GPSTPLQKSSSLSWASSFPHVNIFRGSPFASSNP 60

Query: 61  AHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120
            +AKVLFIQSAWTRRSR EAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT
Sbjct: 61  PYAKVLFIQSAWTRRSREEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120

Query: 121 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKL 180
           SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDE+IEGKL
Sbjct: 121 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDEKIEGKL 180

Query: 181 GIVIDTIKENGIMFVP 197
           GIVIDTIKENGIMFVP
Sbjct: 181 GIVIDTIKENGIMFVP 190

[Close]
BLAST of Cp4.1LG01g26190 vs. NCBI nr
Match: gi|802620974|ref|XP_012075787.1| (PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas])

HSP 1 Score: 263.5 bits (672), Expect = 3.0e-67
Identity = 139/192 (72.40%), Postives = 164/192 (85.42%), Query Frame = 1 

Query: 6   ISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFP--SISLSRGSPFVSSNPAHA 65
           I SS  ++AS R+I+S+  + T +  S K +S SW SSFP  +IS+  GS  +  NP   
Sbjct: 4   IISSCSAAASTRTIVSADSLPTHSNHSVKLASFSWVSSFPRLNISVGNGSLSICPNPTLN 63

Query: 66  KVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKV 125
           K  FIQ+AWTRRSRGEAAK+P++KSWKQRTDMYMRPFLLNVFFSK+FIHAKVMHRGTSKV
Sbjct: 64  KNSFIQAAWTRRSRGEAAKKPSRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSKV 123

Query: 126 ISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIV 185
           +SVATTNA+D+RNS+PSLTDHNACR+IGKLIAERSKEADVYA+SYEPRK+ERIEGKLGIV
Sbjct: 124 VSVATTNARDIRNSIPSLTDHNACRLIGKLIAERSKEADVYAISYEPRKNERIEGKLGIV 183

Query: 186 IDTIKENGIMFV 196
           +DTIKENGI+ V
Sbjct: 184 LDTIKENGILVV 195

[Close]
BLAST of Cp4.1LG01g26190 vs. NCBI nr
Match: gi|566200657|ref|XP_006376245.1| (hypothetical protein POPTR_0013s11310g [Populus trichocarpa])

HSP 1 Score: 261.5 bits (667), Expect = 1.1e-66
Identity = 142/191 (74.35%), Postives = 166/191 (86.91%), Query Frame = 1 

Query: 6   ISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNPAHA-K 65
           ISSS  ++ S RS+LS+  I T ++ S K +S+SW SSFP+I++S     +++NP+   K
Sbjct: 5   ISSS--AALSTRSLLSTDSIPTQSSRSIKPNSISWVSSFPTINIS-----INNNPSSLNK 64

Query: 66  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 125
             FIQ+AWTRRSRGE  K+PNKKSWKQRT+MYM+PFLLNVFFS+KFI AKVMHRGTSKVI
Sbjct: 65  NSFIQAAWTRRSRGELEKKPNKKSWKQRTEMYMKPFLLNVFFSRKFIQAKVMHRGTSKVI 124

Query: 126 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI 185
           SVATTNAKDLR+SLPSLTDHNACR++GKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI
Sbjct: 125 SVATTNAKDLRHSLPSLTDHNACRIVGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI 184

Query: 186 DTIKENGIMFV 196
           DTIKENGI+FV
Sbjct: 185 DTIKENGIIFV 188

[Close]
BLAST of Cp4.1LG01g26190 vs. NCBI nr
Match: gi|645224270|ref|XP_008219028.1| (PREDICTED: uncharacterized protein LOC103319298 [Prunus mume])

HSP 1 Score: 260.4 bits (664), Expect = 2.6e-66
Identity = 141/195 (72.31%), Postives = 162/195 (83.08%), Query Frame = 1 

Query: 1   MAFTAISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60
           M  T  SSS PSS S   +LSS+     +T   K++SLSW SSFP +++S  S      P
Sbjct: 1   MVSTISSSSAPSSCS---LLSSEFFPNRSTQPFKAASLSWVSSFPLVNISISSIADPPTP 60

Query: 61  AHAKVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120
              K   +++AWTRRSRGEAAK+PN+KSWKQ+TDMYMRPFLLNVFFSKKFIHAKVMHRGT
Sbjct: 61  TLNKNSVVRAAWTRRSRGEAAKKPNRKSWKQKTDMYMRPFLLNVFFSKKFIHAKVMHRGT 120

Query: 121 SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKL 180
           SKVISVATTNAKD+R++LPSLTDHNACRVIG+LIAERSKEADVYA+SYEPRKDERIEGKL
Sbjct: 121 SKVISVATTNAKDVRSNLPSLTDHNACRVIGRLIAERSKEADVYALSYEPRKDERIEGKL 180

Query: 181 GIVIDTIKENGIMFV 196
           GIV+DTIKENGI+FV
Sbjct: 181 GIVLDTIKENGIIFV 192

[Close]
BLAST of Cp4.1LG01g26190 vs. NCBI nr
Match: gi|566240347|ref|XP_002325540.2| (hypothetical protein POPTR_0019s11030g [Populus trichocarpa])

HSP 1 Score: 260.4 bits (664), Expect = 2.6e-66
Identity = 138/184 (75.00%), Postives = 158/184 (85.87%), Query Frame = 1 

Query: 12  SSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNPAHAKVLFIQSA 71
           ++ S +S+LS+  + T +T S K +SLSW  SFP+I +S  +   SS     K  FIQ+A
Sbjct: 25  AALSTQSLLSADSLPTSSTRSIKPNSLSWGFSFPTIHISINNNHPSSLN---KTSFIQAA 84

Query: 72  WTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNA 131
           WTRRSRGE AK+PNKKSWKQRTDMYMRPFLLNVFFS++FI AKVMHRGTSKV+SVATTNA
Sbjct: 85  WTRRSRGELAKKPNKKSWKQRTDMYMRPFLLNVFFSRRFIQAKVMHRGTSKVVSVATTNA 144

Query: 132 KDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENG 191
           KDLR+SLPSLTDHNACR++GKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENG
Sbjct: 145 KDLRHSLPSLTDHNACRIVGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENG 204

Query: 192 IMFV 196
           I+FV
Sbjct: 205 IIFV 205

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g26190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL18_AROAE3.5e-0732.2350S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) GN=rplR PE=3 S... [more]
RL18_PETMO1.3e-0628.1050S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR... [more]
RL18_METEP5.1e-0632.2650S ribosomal protein L18 OS=Methylobacterium extorquens (strain PA1) GN=rplR PE... [more]
RL18_METC45.1e-0632.2650S ribosomal protein L18 OS=Methylobacterium extorquens (strain CM4 / NCIMB 136... [more]
BLAST of Cp4.1LG01g26190 vs. TrEMBL
Match NameE-valueIdentityDescription
U5FXQ5_POPTR8.0e-6774.35Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11310g PE=4 SV=1[more]
B9IQG4_POPTR1.8e-6675.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11030g PE=4 SV=2[more]
A0A0D2NCT4_GOSRA4.0e-6675.79Uncharacterized protein OS=Gossypium raimondii GN=B456_005G145200 PE=4 SV=1[more]
A0A061EAU7_THECC5.2e-6673.40Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_011555 PE=4 SV=1[more]
A0A0B0MID5_GOSAR6.8e-6675.9650S ribosomal L18 OS=Gossypium arboreum GN=F383_17619 PE=4 SV=1[more]
BLAST of Cp4.1LG01g26190 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G20230.12.5e-6470.43 Ribosomal L18p/L5e family protein[more]
AT1G08845.29.8e-2447.79 Ribosomal L18p/L5e family protein[more]
AT3G22450.11.8e-1738.74 Ribosomal L18p/L5e family protein[more]
AT5G27820.11.6e-1335.05 Ribosomal L18p/L5e family protein[more]
BLAST of Cp4.1LG01g26190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081085|ref|XP_008441144.1|6.1e-8487.24PREDICTED: uncharacterized protein LOC103485371 [Cucumis melo][more]
gi|802620974|ref|XP_012075787.1|3.0e-6772.40PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas][more]
gi|566200657|ref|XP_006376245.1|1.1e-6674.35hypothetical protein POPTR_0013s11310g [Populus trichocarpa][more]
gi|645224270|ref|XP_008219028.1|2.6e-6672.31PREDICTED: uncharacterized protein LOC103319298 [Prunus mume][more]
gi|566240347|ref|XP_002325540.2|2.6e-6675.00hypothetical protein POPTR_0019s11030g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006354 DNA-templated transcription, elongation
cellular_component GO:0005840 ribosome
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g26190.1Cp4.1LG01g26190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 94..194
score: 8.9
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 99..194
score: 7.8
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 31..195
score: 6.1E
NoneNo IPR availablePANTHERPTHR12899:SF7SUBFAMILY NOT NAMEDcoord: 31..195
score: 6.1E
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 96..192
score: 2.04

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g26190CmaCh15G000050Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g26190CmoCh15G000040Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g26190CmoCh04G031570Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g26190MELO3C008070Melon (DHL92) v3.5.1cpemeB400
Cp4.1LG01g26190ClCG11G008640Watermelon (Charleston Gray)cpewcgB367
Cp4.1LG01g26190Lsi11G010010Bottle gourd (USVL1VR-Ls)cpelsiB322
Cp4.1LG01g26190Bhi04G002083Wax gourdcpewgoB0538
Cp4.1LG01g26190Carg06108Silver-seed gourdcarcpeB0034
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g26190Cp4.1LG13g11770Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g26190Cucumber (Chinese Long) v3cpecucB0482
Cp4.1LG01g26190Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g26190Wild cucumber (PI 183967)cpecpiB385
Cp4.1LG01g26190Cucumber (Chinese Long) v2cpecuB386
Cp4.1LG01g26190Watermelon (Charleston Gray)cpewcgB356
Cp4.1LG01g26190Watermelon (97103) v1cpewmB454
Cp4.1LG01g26190Cucumber (Gy14) v2cgybcpeB214
Cp4.1LG01g26190Melon (DHL92) v3.6.1cpemedB465