CmoCh15G000040 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G000040
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal L18
Location	Cmo_Chr15 : 19051 .. 21134 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATACTTCCACCAAAAAGTCGAGCCTGGACGAATGAAGTGCATCTGAACGATGGCCTTCACCGCAATATCTTCTTCACTGCAGTCTTCTTCTTCTTCTTCTGTGCCTTCAGTTATCTCCTTCCAATGCCCGTCATCTCCCGCCATTCTATCACAGAAATCCTCGTCTCTCTCGTGGGCATCTTCATTTCCGCATGTTACCATATCCAGAGGCTCTCCTGTCGTCTCTTCGAATCCCGCGCATGACAAGGTATAATTTCTTTACTGCCGTCCTATTCGATTCCTTGTCTGTTCCGGAGGATATCTTACCTTCATTTTGAAGTTTATGCATTATCGATTGCGGACCTCTTGCGCAACATCCACGAATTTCTCGATAGGGAGAATTATTTGCAAGGAAGTTTAATATGTTGTGGGTTTGCTGCTTGTTGTGTATTCGAGCCAATAGTCAGTACGAACTCGACCATATCTCAACTTGCCTAAAACTGCTGCATAGTAAAGTAGAGTCTTCTTCAGGATATGGTTTTGAGAATTTACTGCCTGCAGTCATTTTTAGGAGAATAGTCGTGCTGTTATTATGGCTGGACAACACAGAAATGACTGTTACATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCATATGACTTTATTACTATTGTTGAGCCATATTCCAGTTCCGCATCTTTATAATTCTTCGTTTTCGACCTTCTATTTTATTGTTTCAAAAGCTTGTTGCTAGCAGGCAAGCTTGGATTCAGGTCTAAAACTCGTGCTGTGGCCTGTGATTATGAGACTCACTAGCTACATGGTTAATTAGGACTTGTGCCGATCTTCAACCTTTTGATTTTCGCCTCTCTGAAAATTTCAATGCAGGGGGAAGTGGTTGGTTTTTTGGTCAGTTTTTTTTTTTTTTTTAACCAAATACTCGTTTGGGCTCCATAGACTTGGACCCCACATTAGATAAACATGGGTTCCATCTCAAAACTGATTTGACAATGAGATGAGTAACTCATGTATCGTTTAAAGATGGTGAGATCACCCATCTTTCCAATGTGGGATCTTCAACACTTATTGACGTACCAATTTGTCAAACACATAGATACATGCATGCCTAATAAAGGGGGTGTTGATTGGAAGATAATCTGAAACATAGCGTAGTTTTCCGTCCAAGTTTTTATAAACTTTTAATTGCAGGTGTTCTTATTATCCCGTGCATTTTTGCGTTATTTTAGAGTAGGAAGCCAATGTATATATTTTTCATTGCTGCAATCGGCTTGACGCTGTATACTGTGAGGCCTACATTAGAGCAAGGCCCGCTTAAAGCTGCATTTAGTTGATAAATGCAATGTATTCACTCTTTTAACAGATCCAGGTTACTGTTACGATTTGAATTTCTTTTGATAATGAATCAGCAAGTTTACACTTGTAGGTCTTATTTATACAATCAGCTTGGACAAGAAGGTCACGCGAGGAGGCTGCAAAACGACCGAACAAGAAATCATGGAAACAAAGGACAGATATGTATATGAAGCCATTTTTACTCGACGTTTTCTTTTCGAAGAAATTTGTTCATGCAAAGGTAATGCATAGAGGAACAAGCAAAGTGATATCGGTTGCGACAACAAATGCAAAGGATCTTAGGAACAGTCTACCATCACTTACAGATCACAATGCATGCAGAGTAATAGGGAAGCTTATTGCCGAGAGATCAAAGGAAGCAGATGTCTATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGACGGTAAGCTTGGCATTGTTATTGATACCATTAAGGAGAATGGGATAATGTTTGTACCTTGAGTTTAAATAAAGGGAAGAATAATAAGACAAGAAAACAATTTATCTAGATCCTCTAATAGGCAGTAGAGCATAAGAATGTTCCTGTTTAGCTTGTTTGAACTATCGGAAGCTGTTGGTCTTACTACTCCCTTGCATAGCTCTGGTTTATTTAGTTAATTTTATGATTGTATCTTATGATTTCGGGAGTTGACTTCCAACTTCCAAATTCCCTTTATGGTTGTTGTATAACGAAAGTTGTTAGAAGAAAA

mRNA sequence

CATACTTCCACCAAAAAGTCGAGCCTGGACGAATGAAGTGCATCTGAACGATGGCCTTCACCGCAATATCTTCTTCACTGCAGTCTTCTTCTTCTTCTTCTGTGCCTTCAGTTATCTCCTTCCAATGCCCGTCATCTCCCGCCATTCTATCACAGAAATCCTCGTCTCTCTCGTGGGCATCTTCATTTCCGCATGTTACCATATCCAGAGGCTCTCCTGTCGTCTCTTCGAATCCCGCGCATGACAAGGTCTTATTTATACAATCAGCTTGGACAAGAAGGTCACGCGAGGAGGCTGCAAAACGACCGAACAAGAAATCATGGAAACAAAGGACAGATATGTATATGAAGCCATTTTTACTCGACGTTTTCTTTTCGAAGAAATTTGTTCATGCAAAGGTAATGCATAGAGGAACAAGCAAAGTGATATCGGTTGCGACAACAAATGCAAAGGATCTTAGGAACAGTCTACCATCACTTACAGATCACAATGCATGCAGAGTAATAGGGAAGCTTATTGCCGAGAGATCAAAGGAAGCAGATGTCTATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGACGGTAAGCTTGGCATTGTTATTGATACCATTAAGGAGAATGGGATAATGTTTGTACCTTGAGTTTAAATAAAGGGAAGAATAATAAGACAAGAAAACAATTTATCTAGATCCTCTAATAGGCAGTAGAGCATAAGAATGTTCCTGTTTAGCTTGTTTGAACTATCGGAAGCTGTTGGTCTTACTACTCCCTTGCATAGCTCTGGTTTATTTAGTTAATTTTATGATTGTATCTTATGATTTCGGGAGTTGACTTCCAACTTCCAAATTCCCTTTATGGTTGTTGTATAACGAAAGTTGTTAGAAGAAAA

Coding sequence (CDS)

ATGGCCTTCACCGCAATATCTTCTTCACTGCAGTCTTCTTCTTCTTCTTCTGTGCCTTCAGTTATCTCCTTCCAATGCCCGTCATCTCCCGCCATTCTATCACAGAAATCCTCGTCTCTCTCGTGGGCATCTTCATTTCCGCATGTTACCATATCCAGAGGCTCTCCTGTCGTCTCTTCGAATCCCGCGCATGACAAGGTCTTATTTATACAATCAGCTTGGACAAGAAGGTCACGCGAGGAGGCTGCAAAACGACCGAACAAGAAATCATGGAAACAAAGGACAGATATGTATATGAAGCCATTTTTACTCGACGTTTTCTTTTCGAAGAAATTTGTTCATGCAAAGGTAATGCATAGAGGAACAAGCAAAGTGATATCGGTTGCGACAACAAATGCAAAGGATCTTAGGAACAGTCTACCATCACTTACAGATCACAATGCATGCAGAGTAATAGGGAAGCTTATTGCCGAGAGATCAAAGGAAGCAGATGTCTATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGACGGTAAGCTTGGCATTGTTATTGATACCATTAAGGAGAATGGGATAATGTTTGTACCTTGA

Homology

[Close]

BLAST of CmoCh15G000040 vs. Swiss-Prot
Match: RL18_AROAE (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) GN=rplR PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-07
Identity = 38/121 (31.40%), Postives = 68/121 (56.20%), Query Frame = 1


Query: 76  RRSREEAAKRPNKKSWKQRTDMYMKPFLLDVFFSKKFVHAKVMHRGTSKVISVATTNAKD 135
           RR+R+  AK    KS +           L VF +   ++A+V+    S+V++ A+T   D
Sbjct: 9   RRARKTRAKIAELKSVR-----------LTVFRTNSHIYAQVIDGSGSRVLAAASTVEAD 68

Query: 136 LRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDGKLGIVIDTIKENGIM 195
           +R+ LP+  +  A +V+GKLIAER+K A V A++++ R   +  G++  + +  +E G+ 
Sbjct: 69  VRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFD-RAGFQYHGRVKALAEAAREGGLK 117

Query: 196 F 197
           F
Sbjct: 129 F 117

[Close]

BLAST of CmoCh15G000040 vs. Swiss-Prot
Match: RL18_PETMO (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.7e-06
Identity = 32/121 (26.45%), Postives = 65/121 (53.72%), Query Frame = 1


Query: 84  KRPNKKSWKQRTDMYMKPFL--------LDVFFSKKFVHAKVMHRGTSKVISVATTNAKD 143
           K+ +KK+ +Q+  + ++  +        L VF S+K ++A+++       ++ A+T  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 144 LRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDGKLGIVIDTIKENGIM 197
           L+  L    D NA + +GKLIAE++KE  +  + ++ R   +  GK+  + +  +E G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFD-RSGYKYHGKVKALAEAARETGLK 122

[Close]

BLAST of CmoCh15G000040 vs. Swiss-Prot
Match: RL18_METC4 (50S ribosomal protein L18 OS=Methylobacterium extorquens (strain CM4 / NCIMB 13688) GN=rplR PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.7e-06
Identity = 29/93 (31.18%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 104 LDVFFSKKFVHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEA 163
           L VF S K ++ +V+     + ++ A++  KDL++SL +  D  A   +GKL+AER+K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 164 DVYAMSYEPRKDERIDGKLGIVIDTIKENGIMF 197
            V  + ++ R      G++  + D  +E G+ F
Sbjct: 89  GVTKVVFD-RSGYIFHGRVKALADAAREGGLDF 120

[Close]

BLAST of CmoCh15G000040 vs. Swiss-Prot
Match: RL18_METEP (50S ribosomal protein L18 OS=Methylobacterium extorquens (strain PA1) GN=rplR PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.7e-06
Identity = 29/93 (31.18%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 104 LDVFFSKKFVHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEA 163
           L VF S K ++ +V+     + ++ A++  KDL++SL +  D  A   +GKL+AER+K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 164 DVYAMSYEPRKDERIDGKLGIVIDTIKENGIMF 197
            V  + ++ R      G++  + D  +E G+ F
Sbjct: 89  GVTKVVFD-RSGYIFHGRVKALADAAREGGLDF 120

[Close]

BLAST of CmoCh15G000040 vs. TrEMBL
Match: A0A061EAU7_THECC (Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_011555 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.3e-64
Identity = 136/192 (70.83%), Postives = 159/192 (82.81%), Query Frame = 1


Query: 6   ISSSLQSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSSNPAHD 65
           ++S + SSS+    S+ SF   S  A    K +SLSW SSFP   IS  S  +   P+ +
Sbjct: 1   MASVISSSSALPTRSLDSFPTHSERA---NKLTSLSWVSSFPSTNISINSFTLPPAPSLN 60

Query: 66  KVLFIQSAWTRRSREEAAKRPNKKSWKQRTDMYMKPFLLDVFFSKKFVHAKVMHRGTSKV 125
           K  F+Q+AWTRRSR EAAK+PN+KSWKQRTDMYM+PFLL+VFFSKKF+HAKVMHRGTSKV
Sbjct: 61  KGSFVQAAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKV 120

Query: 126 ISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDGKLGIV 185
           ISVATTNAKDLRN+LPSLTDHNACR+IGKLIAERSK+ADVYAMSY+PRK ERI+GKLGIV
Sbjct: 121 ISVATTNAKDLRNTLPSLTDHNACRIIGKLIAERSKDADVYAMSYDPRKGERIEGKLGIV 180

Query: 186 IDTIKENGIMFV 198
           +DTIKENGI+FV
Sbjct: 181 LDTIKENGIIFV 189

[Close]

BLAST of CmoCh15G000040 vs. TrEMBL
Match: A0A0D2NCT4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G145200 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.3e-64
Identity = 137/186 (73.66%), Postives = 158/186 (84.95%), Query Frame = 1


Query: 14  SSSSVPS--VISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSSNPAHDKVLFIQ 73
           SSS++P+  + SF   S     S K +SLSWASSFP + IS  S  +   P+ +K  F+Q
Sbjct: 7   SSSALPTRPLSSFPTHSER---SNKLTSLSWASSFPSIDISINSFTLPPAPSLNKGPFVQ 66

Query: 74  SAWTRRSREEAAKRPNKKSWKQRTDMYMKPFLLDVFFSKKFVHAKVMHRGTSKVISVATT 133
           +AWTRRSR EAAK+PN+KSWKQRTDMYM+PFLL+VFFSKKF+HAKVMHRGTSKVISVATT
Sbjct: 67  AAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATT 126

Query: 134 NAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDGKLGIVIDTIKE 193
           NAKDLRN+L SLTDHNACR+IGKLIAERSKEADVYAMSYEPRK ERI+GKLGIV+DTIKE
Sbjct: 127 NAKDLRNNLASLTDHNACRIIGKLIAERSKEADVYAMSYEPRKGERIEGKLGIVLDTIKE 186

Query: 194 NGIMFV 198
           NGI+FV
Sbjct: 187 NGIIFV 189

[Close]

BLAST of CmoCh15G000040 vs. TrEMBL
Match: M5XH65_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015567mg PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.9e-64
Identity = 125/162 (77.16%), Postives = 145/162 (89.51%), Query Frame = 1


Query: 36  KSSSLSWASSFPHVTISRGSPVVSSNPAHDKVLFIQSAWTRRSREEAAKRPNKKSWKQRT 95
           K++SLSW SSFP V IS  S      P  +K   +++AWTRRSR EAAK+PN+KSWKQ+T
Sbjct: 3   KAASLSWVSSFPPVNISISSIADPPTPTLNKNSVVRAAWTRRSRGEAAKKPNRKSWKQKT 62

Query: 96  DMYMKPFLLDVFFSKKFVHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKL 155
           DMYM+PFLL+VFFSKKF+HAKVMHRGTSKVISVATTNAKD+R++LPSLTDHNACRVIG+L
Sbjct: 63  DMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDVRSNLPSLTDHNACRVIGRL 122

Query: 156 IAERSKEADVYAMSYEPRKDERIDGKLGIVIDTIKENGIMFV 198
           IAERSKEADVYA+SYEPRKDERI+GKLGIV+DTIKENGI+FV
Sbjct: 123 IAERSKEADVYALSYEPRKDERIEGKLGIVLDTIKENGIIFV 164

[Close]

BLAST of CmoCh15G000040 vs. TrEMBL
Match: A0A0B0MID5_GOSAR (50S ribosomal L18 OS=Gossypium arboreum GN=F383_17619 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 8.4e-64
Identity = 137/190 (72.11%), Postives = 156/190 (82.11%), Query Frame = 1


Query: 8   SSLQSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSSNPAHDKV 67
           S + SSS+    S+ SF   S     S K +SLSW SSFP + IS  S  +   P+ +K 
Sbjct: 3   SIIVSSSALPTRSLNSFPTHSER---SNKLTSLSWTSSFPSINISINSFTLPPAPSLNKG 62

Query: 68  LFIQSAWTRRSREEAAKRPNKKSWKQRTDMYMKPFLLDVFFSKKFVHAKVMHRGTSKVIS 127
            F+Q+AWTRRSR EAAK+PN+KSWKQRTDMYM+PFLL+VFFSKKF+HAKVMHRGTSKVIS
Sbjct: 63  PFVQAAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVIS 122

Query: 128 VATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDGKLGIVID 187
           VATTNAKDLRN+L SLTDHNACR IGKLIAERSKEADVYAMSYEPRK ERI+GKLGIV+D
Sbjct: 123 VATTNAKDLRNNLASLTDHNACRTIGKLIAERSKEADVYAMSYEPRKGERIEGKLGIVLD 182

Query: 188 TIKENGIMFV 198
           TIKENGI+FV
Sbjct: 183 TIKENGIIFV 189

[Close]

BLAST of CmoCh15G000040 vs. TrEMBL
Match: U5FXQ5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11310g PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63
Identity = 133/189 (70.37%), Postives = 159/189 (84.13%), Query Frame = 1


Query: 10  LQSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSSNPAH-DKVL 69
           + SS++ S  S++S     + +  S K +S+SW SSFP + IS     +++NP+  +K  
Sbjct: 5   ISSSAALSTRSLLSTDSIPTQSSRSIKPNSISWVSSFPTINIS-----INNNPSSLNKNS 64

Query: 70  FIQSAWTRRSREEAAKRPNKKSWKQRTDMYMKPFLLDVFFSKKFVHAKVMHRGTSKVISV 129
           FIQ+AWTRRSR E  K+PNKKSWKQRT+MYMKPFLL+VFFS+KF+ AKVMHRGTSKVISV
Sbjct: 65  FIQAAWTRRSRGELEKKPNKKSWKQRTEMYMKPFLLNVFFSRKFIQAKVMHRGTSKVISV 124

Query: 130 ATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDGKLGIVIDT 189
           ATTNAKDLR+SLPSLTDHNACR++GKLIAERSKEADVYAMSYEPRKDERI+GKLGIVIDT
Sbjct: 125 ATTNAKDLRHSLPSLTDHNACRIVGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDT 184

Query: 190 IKENGIMFV 198
           IKENGI+FV
Sbjct: 185 IKENGIIFV 188

[Close]

BLAST of CmoCh15G000040 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 238.4 bits (607), Expect = 3.7e-63
Identity = 120/161 (74.53%), Postives = 142/161 (88.20%), Query Frame = 1


Query: 38  SSLSWASSFPHVTISRGSPVVSSNPAHDKVLFIQSAWTRRSREEAAKRPNKKSWKQRTDM 97
           S++SW SSFP ++I  GS  V S+P   K  F+Q+AWTRRSR EAAKRPN+KSWKQRTDM
Sbjct: 29  SAVSWQSSFPKLSIEIGS--VISSPIVKKDSFVQAAWTRRSRGEAAKRPNRKSWKQRTDM 88

Query: 98  YMKPFLLDVFFSKKFVHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIA 157
           YM+PFLL+VFFS+KF+HAKVMHR TSKVISVATTNA+D+R ++PSL D+ ACR+IGKLIA
Sbjct: 89  YMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIGKLIA 148

Query: 158 ERSKEADVYAMSYEPRKDERIDGKLGIVIDTIKENGIMFVP 199
           ERS EADVYA+SYEPRK ERI+GKLGIVIDTIKE+GI+FVP
Sbjct: 149 ERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGIIFVP 187

[Close]

BLAST of CmoCh15G000040 vs. TAIR10
Match: AT1G08845.2 (AT1G08845.2 Ribosomal L18p/L5e family protein)

HSP 1 Score: 111.3 bits (277), Expect = 6.8e-25
Identity = 56/117 (47.86%), Postives = 83/117 (70.94%), Query Frame = 1


Query: 79  REEAAKRPNKK-SWKQRTDMYMKPFLLDVFFSKKFVHAKVMHRGTSKVISVATTNAKDLR 138
           +E+ +K P+K  S+KQRT  YM+PF LDVF SK+FV A + HR T + ++VA TN+KD++
Sbjct: 111 KEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVK 170

Query: 139 NSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDGKLGIVIDTIKENGI 195
             L S  D  AC  IG++++ER+KEADVY  SY PR  ++ +GK+  V+ ++ +NGI
Sbjct: 171 AVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of CmoCh15G000040 vs. TAIR10
Match: AT3G22450.1 (AT3G22450.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-18
Identity = 46/120 (38.33%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 75  TRRSREEAAKRPNKKSWKQRTDMYMKPFLLDVFFSKKFVHAKVMHRGTSKVISVATTNAK 134
           T    E   KR    ++ Q T  +  PF LD++ SK+ V A V+HR TSKV++VA + +K
Sbjct: 171 TDHPNEAVKKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISK 230

Query: 135 DLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDGKLGIVIDTIKENGI 194
           D++  L S  +  AC  +G ++A+RS E D++ + Y PRK ++I+GKL +V+  + +NG+
Sbjct: 231 DMKFDLGSRRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of CmoCh15G000040 vs. TAIR10
Match: AT5G27820.1 (AT5G27820.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 74.7 bits (182), Expect = 7.1e-14
Identity = 36/97 (37.11%), Postives = 62/97 (63.92%), Query Frame = 1


Query: 98  YMKPFLLDVFFSKKFVHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIA 157
           Y+KP++L + F+ KFVHA+V+H  T+ V   A++  K LR ++    D  A   IGK++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 158 ERSKEADVYAMSYEPRKDERIDGKLGIVIDTIKENGI 195
           ER    D+ A++ + +K++R  GK+  VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

[Close]

BLAST of CmoCh15G000040 vs. NCBI nr
Match: gi|659081085|ref|XP_008441144.1| (PREDICTED: uncharacterized protein LOC103485371 [Cucumis melo])

HSP 1 Score: 314.3 bits (804), Expect = 1.5e-82
Identity = 169/198 (85.35%), Postives = 178/198 (89.90%), Query Frame = 1


Query: 1   MAFTAISSSLQSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSS 60
           MAFTAI+SSL S SS     V S Q PS+P    QKSSSLSWASSFPHV I RGSP  SS
Sbjct: 1   MAFTAIASSLPSCSS-----VFSSQGPSTPL---QKSSSLSWASSFPHVNIFRGSPFASS 60

Query: 61  NPAHDKVLFIQSAWTRRSREEAAKRPNKKSWKQRTDMYMKPFLLDVFFSKKFVHAKVMHR 120
           NP + KVLFIQSAWTRRSREEAAKRPNKKSWKQRTDMYM+PFLL+VFFSKKF+HAKVMHR
Sbjct: 61  NPPYAKVLFIQSAWTRRSREEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHR 120

Query: 121 GTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDG 180
           GTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDE+I+G
Sbjct: 121 GTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDEKIEG 180

Query: 181 KLGIVIDTIKENGIMFVP 199
           KLGIVIDTIKENGIMFVP
Sbjct: 181 KLGIVIDTIKENGIMFVP 190

[Close]

BLAST of CmoCh15G000040 vs. NCBI nr
Match: gi|823157755|ref|XP_012478759.1| (PREDICTED: uncharacterized protein LOC105794236 [Gossypium raimondii])

HSP 1 Score: 254.2 bits (648), Expect = 1.9e-64
Identity = 137/186 (73.66%), Postives = 158/186 (84.95%), Query Frame = 1


Query: 14  SSSSVPS--VISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSSNPAHDKVLFIQ 73
           SSS++P+  + SF   S     S K +SLSWASSFP + IS  S  +   P+ +K  F+Q
Sbjct: 7   SSSALPTRPLSSFPTHSER---SNKLTSLSWASSFPSIDISINSFTLPPAPSLNKGPFVQ 66

Query: 74  SAWTRRSREEAAKRPNKKSWKQRTDMYMKPFLLDVFFSKKFVHAKVMHRGTSKVISVATT 133
           +AWTRRSR EAAK+PN+KSWKQRTDMYM+PFLL+VFFSKKF+HAKVMHRGTSKVISVATT
Sbjct: 67  AAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATT 126

Query: 134 NAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDGKLGIVIDTIKE 193
           NAKDLRN+L SLTDHNACR+IGKLIAERSKEADVYAMSYEPRK ERI+GKLGIV+DTIKE
Sbjct: 127 NAKDLRNNLASLTDHNACRIIGKLIAERSKEADVYAMSYEPRKGERIEGKLGIVLDTIKE 186

Query: 194 NGIMFV 198
           NGI+FV
Sbjct: 187 NGIIFV 189

[Close]

BLAST of CmoCh15G000040 vs. NCBI nr
Match: gi|590699289|ref|XP_007045886.1| (Ribosomal L18p/L5e family protein [Theobroma cacao])

HSP 1 Score: 254.2 bits (648), Expect = 1.9e-64
Identity = 136/192 (70.83%), Postives = 159/192 (82.81%), Query Frame = 1


Query: 6   ISSSLQSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSSNPAHD 65
           ++S + SSS+    S+ SF   S  A    K +SLSW SSFP   IS  S  +   P+ +
Sbjct: 1   MASVISSSSALPTRSLDSFPTHSERA---NKLTSLSWVSSFPSTNISINSFTLPPAPSLN 60

Query: 66  KVLFIQSAWTRRSREEAAKRPNKKSWKQRTDMYMKPFLLDVFFSKKFVHAKVMHRGTSKV 125
           K  F+Q+AWTRRSR EAAK+PN+KSWKQRTDMYM+PFLL+VFFSKKF+HAKVMHRGTSKV
Sbjct: 61  KGSFVQAAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKV 120

Query: 126 ISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDGKLGIV 185
           ISVATTNAKDLRN+LPSLTDHNACR+IGKLIAERSK+ADVYAMSY+PRK ERI+GKLGIV
Sbjct: 121 ISVATTNAKDLRNTLPSLTDHNACRIIGKLIAERSKDADVYAMSYDPRKGERIEGKLGIV 180

Query: 186 IDTIKENGIMFV 198
           +DTIKENGI+FV
Sbjct: 181 LDTIKENGIIFV 189

[Close]

BLAST of CmoCh15G000040 vs. NCBI nr
Match: gi|596222987|ref|XP_007224095.1| (hypothetical protein PRUPE_ppa015567mg, partial [Prunus persica])

HSP 1 Score: 252.3 bits (643), Expect = 7.0e-64
Identity = 125/162 (77.16%), Postives = 145/162 (89.51%), Query Frame = 1


Query: 36  KSSSLSWASSFPHVTISRGSPVVSSNPAHDKVLFIQSAWTRRSREEAAKRPNKKSWKQRT 95
           K++SLSW SSFP V IS  S      P  +K   +++AWTRRSR EAAK+PN+KSWKQ+T
Sbjct: 3   KAASLSWVSSFPPVNISISSIADPPTPTLNKNSVVRAAWTRRSRGEAAKKPNRKSWKQKT 62

Query: 96  DMYMKPFLLDVFFSKKFVHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKL 155
           DMYM+PFLL+VFFSKKF+HAKVMHRGTSKVISVATTNAKD+R++LPSLTDHNACRVIG+L
Sbjct: 63  DMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDVRSNLPSLTDHNACRVIGRL 122

Query: 156 IAERSKEADVYAMSYEPRKDERIDGKLGIVIDTIKENGIMFV 198
           IAERSKEADVYA+SYEPRKDERI+GKLGIV+DTIKENGI+FV
Sbjct: 123 IAERSKEADVYALSYEPRKDERIEGKLGIVLDTIKENGIIFV 164

[Close]

BLAST of CmoCh15G000040 vs. NCBI nr
Match: gi|728811928|gb|KHG00550.1| (50S ribosomal L18 [Gossypium arboreum])

HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63
Identity = 137/190 (72.11%), Postives = 156/190 (82.11%), Query Frame = 1


Query: 8   SSLQSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSSNPAHDKV 67
           S + SSS+    S+ SF   S     S K +SLSW SSFP + IS  S  +   P+ +K 
Sbjct: 3   SIIVSSSALPTRSLNSFPTHSER---SNKLTSLSWTSSFPSINISINSFTLPPAPSLNKG 62

Query: 68  LFIQSAWTRRSREEAAKRPNKKSWKQRTDMYMKPFLLDVFFSKKFVHAKVMHRGTSKVIS 127
            F+Q+AWTRRSR EAAK+PN+KSWKQRTDMYM+PFLL+VFFSKKF+HAKVMHRGTSKVIS
Sbjct: 63  PFVQAAWTRRSRGEAAKQPNRKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVIS 122

Query: 128 VATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIDGKLGIVID 187
           VATTNAKDLRN+L SLTDHNACR IGKLIAERSKEADVYAMSYEPRK ERI+GKLGIV+D
Sbjct: 123 VATTNAKDLRNNLASLTDHNACRTIGKLIAERSKEADVYAMSYEPRKGERIEGKLGIVLD 182

Query: 188 TIKENGIMFV 198
           TIKENGI+FV
Sbjct: 183 TIKENGIIFV 189

The following BLAST results are available for this feature:

BLAST of CmoCh15G000040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL18_AROAE	3.5e-07	31.40	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) GN=rplR PE=3 S...	[more]
RL18_PETMO	6.7e-06	26.45	50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR...	[more]
RL18_METC4	8.7e-06	31.18	50S ribosomal protein L18 OS=Methylobacterium extorquens (strain CM4 / NCIMB 136...	[more]
RL18_METEP	8.7e-06	31.18	50S ribosomal protein L18 OS=Methylobacterium extorquens (strain PA1) GN=rplR PE...	[more]

BLAST of CmoCh15G000040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EAU7_THECC	1.3e-64	70.83	Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_011555 PE=4 SV=1	[more]
A0A0D2NCT4_GOSRA	1.3e-64	73.66	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G145200 PE=4 SV=1	[more]
M5XH65_PRUPE	4.9e-64	77.16	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015567mg PE=4 S...	[more]
A0A0B0MID5_GOSAR	8.4e-64	72.11	50S ribosomal L18 OS=Gossypium arboreum GN=F383_17619 PE=4 SV=1	[more]
U5FXQ5_POPTR	1.9e-63	70.37	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11310g PE=4 SV=1	[more]

BLAST of CmoCh15G000040 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20230.1	3.7e-63	74.53	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	6.8e-25	47.86	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	3.6e-18	38.33	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	7.1e-14	37.11	Ribosomal L18p/L5e family protein	[more]

BLAST of CmoCh15G000040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081085\|ref\|XP_008441144.1\|	1.5e-82	85.35	PREDICTED: uncharacterized protein LOC103485371 [Cucumis melo]	[more]
gi\|823157755\|ref\|XP_012478759.1\|	1.9e-64	73.66	PREDICTED: uncharacterized protein LOC105794236 [Gossypium raimondii]	[more]
gi\|590699289\|ref\|XP_007045886.1\|	1.9e-64	70.83	Ribosomal L18p/L5e family protein [Theobroma cacao]	[more]
gi\|596222987\|ref\|XP_007224095.1\|	7.0e-64	77.16	hypothetical protein PRUPE_ppa015567mg, partial [Prunus persica]	[more]
gi\|728811928\|gb\|KHG00550.1\|	1.2e-63	72.11	50S ribosomal L18 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G000040.1	CmoCh15G000040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 92..196 score: 3.
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 100..196 score: 9.4
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..197 score: 7.9E
None	No IPR available	PANTHER	PTHR12899:SF7	SUBFAMILY NOT NAMED	coord: 1..197 score: 7.9E
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 98..194 score: 2.12

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G000040	CmaCh15G000050	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G000040	MELO3C008070	Melon (DHL92) v3.5.1	cmomeB258
CmoCh15G000040	ClCG11G008640	Watermelon (Charleston Gray)	cmowcgB238
CmoCh15G000040	Lsi11G010010	Bottle gourd (USVL1VR-Ls)	cmolsiB258
CmoCh15G000040	Cp4.1LG01g26190	Cucurbita pepo (Zucchini)	cmocpeB279
CmoCh15G000040	Cp4.1LG13g11770	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G000040	Cla97C11G215000	Watermelon (97103) v2	cmowmbB279
CmoCh15G000040	Bhi04G002083	Wax gourd	cmowgoB0390
CmoCh15G000040	Carg06108	Silver-seed gourd	carcmoB0031
CmoCh15G000040	Carg27300	Silver-seed gourd	carcmoB0425

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G000040	CmoCh04G031570	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G000040	Wild cucumber (PI 183967)	cmocpiB271
CmoCh15G000040	Watermelon (97103) v1	cmowmB276
CmoCh15G000040	Cucumber (Gy14) v2	cgybcmoB182
CmoCh15G000040	Melon (DHL92) v3.6.1	cmomedB292
CmoCh15G000040	Cucumber (Chinese Long) v3	cmocucB0321
CmoCh15G000040	Wax gourd	cmowgoB0392