Lsi11G010000 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G010000
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionChaperone DnaJ-domain superfamily protein
Locationchr11 : 16913982 .. 16915786 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCCCTCCAATTCCCAATTCTCTCCTCTCTCACACAACCTTCTTCCACTCGCCTGCTCACACGTTCCGTACATGGCGTGTCTATGCATCTCAAGCTCCCAGTCCCAACAACGACCGCCAAAGACCTCCACCGGGTGTCGACACAAGAATTCATTGGCAAAACCAAGAAGAAGGTTGGATTGGAGGACACCACAAAAAGGAGACTAACGATCATGATAATAATAATAATAATAATATTTTGGGTCCAAGTTTGGCCGACTTGCTCAACAACTCATCCGATTCTCACTACCAGTACGTCACTCGTCATAATTCTTTCTGTATGCTTTCATTTCTTTTCTTTCCATTCAGTTCTTACTCTTACTTCTCCAGTTTTATTTAATTCTTTCTGAGTAGTTCGAGATTTTATTGCAACTCATTAATTATGGTAGTTTCAGCTCTTACTTCTTGGATTAGTTTTGAGAAATTGGATTCAAATAGAGAAGAAAATGTCTATGCATAAAAGAAAGAAAAGAGAACAGGGGAAACAAAAAGCCCTAATCTTCATCTTCTACCTCTCCCTCTCTCTCTCACAGCCGTTGACCCCCTTCTCCCCTTTTCTGTTCATCTCCTTCTCCGGCGTCACTTCCTCCCTGCGACGCATCTCCGGCGACCTTTAGCGGCTGCGTGCGGTTCTCCCCTCTCGACTGGGTCATTTAACTGTTGAATTCCACACTCAAGTAGCACTTTTTTTTTAGTATAACAATTGCGGATTGAACATCGAACTTCCAACCTTTAGAAAGAGTTAAGCTAGTTTTGGCTTAGTCATATTTGACGTTTTGATACAAGATAGTTTACCTTAAGACTTAGTAGAGTAATTACAATGAGTAACACTTTTATAGACCGATAATTAAGTGTATAGCGACATATTGTAAATAGGATAATTGCAATGAACACTTTTAACACTAGAAATTAAGTGTATATCAATATTTTAAAAGAATTATAAATATAGCAAAATCAATTAGTGGTAAACTATATTGATGAGAGAAACCTATTAGTGATGGACTCCAATACTATGAGAATTAGATCTAAATTTTGCTATATTTACACTATTTTTTGCATTGTGCTATATTTGCTAATACTTTAAGTCTAGTTGCTATAAAAATTTGCAACTGGCACTTGCAAATATAGTCAAATCTATTCGTGACTTGATTGCTGATAGACTTCTACGAGTGATGAACTTTATCCCTGATAGACTTCGAGAGTTTGATCTAAAATTTGTCATATATGTAAATTCTTTTACGTTGTATTATATCTATTAATACTTTGAACTTGATTGTTATATTTGCAACCGTCTTGGTATATAATTATTTGTTGTTCTTGTATATATGTGGAGGTAGGTTCTTAGGAGTGGGAGCAGAGGCTGAGCTAGAAGAGATAAAAAGTGCATATCGGAGATTATCAAAAGAATATCATCCCGACACAACGTCTCTCCCTCTAAAAGCTGCGTCGGAGAAATTCATGAAATTAAAACAAGTGTACGATGTCCTGAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAATTGAGGATTAAATTAGAAGATCCTTACGAGCAAGAGTTGCAAAATTGGAAATCCACTCCAGACATGGTCGATCGCCTTGCAGGAAGGAACATGGACTTGAGTGATCAGGCCACCACTGCTCTTACTGTGGATATCCTTATCATTCTCTTTGCTATAGCCTGTATTGTTTATGTCTTGATTTTTAAAGAACCATATTATTGA

mRNA sequence

ATGGCCTCCCCTCCAATTCCCAATTCTCTCCTCTCTCACACAACCTTCTTCCACTCGCCTGCTCACACGTTCCGTACATGGCGTGTCTATGCATCTCAAGCTCCCAGTCCCAACAACGACCGCCAAAGACCTCCACCGGGTGTCGACACAAGAATTCATTGGCAAAACCAAGAAGAAGGTTGGATTGGAGGACACCACAAAAAGGAGACTAACGATCATGATAATAATAATAATAATAATATTTTGGGTCCAAGTTTGGCCGACTTGCTCAACAACTCATCCGATTCTCACTACCAGTACGTCACTCGTCATAATTCTTTCTAGATAAAAAGTGCATATCGGAGATTATCAAAAGAATATCATCCCGACACAACGTCTCTCCCTCTAAAAGCTGCGTCGGAGAAATTCATGAAATTAAAACAAGTGTACGATGTCCTGAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAATTGAGGATTAAATTAGAAGATCCTTACGAGCAAGAGTTGCAAAATTGGAAATCCACTCCAGACATGGTCGATCGCCTTGCAGGAAGGAACATGGACTTGAGTGATCAGGCCACCACTGCTCTTACTGTGGATATCCTTATCATTCTCTTTGCTATAGCCTGTATTGTTTATGTCTTGATTTTTAAAGAACCATATTATTGA

Coding sequence (CDS)

ATGGCCTCCCCTCCAATTCCCAATTCTCTCCTCTCTCACACAACCTTCTTCCACTCGCCTGCTCACACGTTCCGTACATGGCGTGTCTATGCATCTCAAGCTCCCAGTCCCAACAACGACCGCCAAAGACCTCCACCGGGTGTCGACACAAGAATTCATTGGCAAAACCAAGAAGAAGGTTGGATTGGAGGACACCACAAAAAGGAGACTAACGATCATGATAATAATAATAATAATAATATTTTGGGTCCAAGTTTGGCCGACTTGCTCAACAACTCATCCGATTCTCACTACCAGTACGTCACTCGTCATAATTCTTTCTAG

Protein sequence

MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEGWIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYVTRHNSF
Homology
[Close]
BLAST of Lsi11G010000 vs. Swiss-Prot
Match: NDHT_ARATH (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana GN=ndhT PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-09
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 25  RTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEGWIGGHHKKETNDHDNNNNNNILGP 84
           R  R+YASQ P+  +   +P PGVDTRIHW++ +EGWIGG         D +  N +   
Sbjct: 39  RVTRIYASQGPTKPS---KPSPGVDTRIHWESPDEGWIGG-RSDPAKSVDEDKTNLLSDE 98

Query: 85  SLADLLNNSSDSHYQYV 102
             A+L+ +S DSHYQ++
Sbjct: 99  KFAELIKDSFDSHYQFL 111

[Close]
BLAST of Lsi11G010000 vs. TrEMBL
Match: A0A0A0LT25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042670 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.4e-33
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 1 

Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MASPP PNSLL H TF HS A TFRTWRVYA+QAP  NNDR+RPPPGVDTRIHWQN+EEG
Sbjct: 1   MASPPFPNSLLFHKTF-HSSAPTFRTWRVYAAQAP--NNDRRRPPPGVDTRIHWQNEEEG 60

Query: 61  WIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WI G  KKE+ND  NN +NN+LGPSLADLLNNSSDSHYQ++
Sbjct: 61  WI-GRKKKESND-QNNVSNNMLGPSLADLLNNSSDSHYQFL 96

[Close]
BLAST of Lsi11G010000 vs. TrEMBL
Match: A0A067GW77_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024973mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.1e-13
Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 1 

Query: 28  RVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEGWIGG----HHKKETNDHDNNNNNNILG 87
           RV+ASQ    N  ++R  PGVDTRIHW+N++EGWIGG     H+   N +      N+LG
Sbjct: 44  RVFASQKAGSNKSQRRAQPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLG 103

Query: 88  PSLADLLNNSSDSHYQYV 102
              ADLLNNSSDSHYQ++
Sbjct: 104 EKFADLLNNSSDSHYQFL 121

[Close]
BLAST of Lsi11G010000 vs. TrEMBL
Match: V4SJB7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002209mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1 

Query: 28  RVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEGWIGG----HHKKETNDHDNNNNNNILG 87
           RV+ASQ    N  ++R  PGVDTRIHW+N++EGWIGG     H+   N +      N+LG
Sbjct: 44  RVFASQKAGSNKSQRRAQPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLG 103

Query: 88  PSLADLLNNSSDSHYQYV 102
              ADLL+NSSDSHYQ++
Sbjct: 104 EKFADLLDNSSDSHYQFL 121

[Close]
BLAST of Lsi11G010000 vs. TrEMBL
Match: A0A068U4U7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00015938001 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-12
Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 1 

Query: 1   MASPPIPNSLL----------SHTTFFHSPAHT----------FRTWRVYASQAPSPNND 60
           MASP +P + L          SH T  +S + T           R + V A+ A    N 
Sbjct: 1   MASPAVPPTSLPTLLKDRHTQSHRTQGYSASVTKHGKGLNRGHLRIYAVAAAAAAQGPNQ 60

Query: 61  RQRPPPGVDTRIHWQNQEEGWIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQY 102
           R+R PPGVDTRIHW+N++EGWIGG  K +        + N+LG + +DLLN+SSDSHYQ+
Sbjct: 61  RRRAPPGVDTRIHWENEDEGWIGG-PKSQPTQEQLKTDQNLLGQNFSDLLNSSSDSHYQF 120

[Close]
BLAST of Lsi11G010000 vs. TrEMBL
Match: A0A061EBG7_THECC (Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao GN=TCM_011554 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.9e-12
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 29  VYASQAPSPNNDRQRPPPGVDTRIHWQNQEEGWIGGHHKKETNDHD---NNNNNNILGPS 88
           V ASQ PS    RQR PPGVDTRIHW N++EGWIGG  K +  +          N+LG  
Sbjct: 89  VLASQGPS---GRQRAPPGVDTRIHWDNEDEGWIGGSSKSQQTEEKLGAEEQQKNLLGEK 148

Query: 89  LADLLNNSSDSHYQYV 102
            ADLLN+SSDSHYQ++
Sbjct: 149 FADLLNDSSDSHYQFL 161

[Close]
BLAST of Lsi11G010000 vs. TAIR10
Match: AT4G09350.1 (AT4G09350.1 Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 25  RTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEGWIGGHHKKETNDHDNNNNNNILGP 84
           R  R+YASQ P+  +   +P PGVDTRIHW++ +EGWIGG         D +  N +   
Sbjct: 39  RVTRIYASQGPTKPS---KPSPGVDTRIHWESPDEGWIGG-RSDPAKSVDEDKTNLLSDE 98

Query: 85  SLADLLNNSSDSHYQYV 102
             A+L+ +S DSHYQ++
Sbjct: 99  KFAELIKDSFDSHYQFL 111

[Close]
BLAST of Lsi11G010000 vs. NCBI nr
Match: gi|659066817|ref|XP_008462782.1| (PREDICTED: dnaJ homolog subfamily B member 12 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-33
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 1 

Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MAS P PNSLL H TF HSPA  FRTWRVYA+QAP  NNDR+RPPPGVDTRIHWQN+EEG
Sbjct: 1   MASSPFPNSLLFHKTF-HSPAPAFRTWRVYAAQAP--NNDRRRPPPGVDTRIHWQNEEEG 60

Query: 61  WIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WIGG  KKE+ND  NN +NN+LGPSLADLLNNSSDSHYQ++
Sbjct: 61  WIGG-KKKESND-QNNESNNMLGPSLADLLNNSSDSHYQFL 96

[Close]
BLAST of Lsi11G010000 vs. NCBI nr
Match: gi|449439697|ref|XP_004137622.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 7.7e-33
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 1 

Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MASPP PNSLL H TF HS A TFRTWRVYA+QAP  NNDR+RPPPGVDTRIHWQN+EEG
Sbjct: 1   MASPPFPNSLLFHKTF-HSSAPTFRTWRVYAAQAP--NNDRRRPPPGVDTRIHWQNEEEG 60

Query: 61  WIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WI G  KKE+ND  NN +NN+LGPSLADLLNNSSDSHYQ++
Sbjct: 61  WI-GRKKKESND-QNNVSNNMLGPSLADLLNNSSDSHYQFL 96

[Close]
BLAST of Lsi11G010000 vs. NCBI nr
Match: gi|568838327|ref|XP_006473166.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Citrus sinensis])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 1 

Query: 28  RVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEGWIGG----HHKKETNDHDNNNNNNILG 87
           RV+ASQ    N  ++R  PGVDTRIHW+N++EGWIGG     H+   N +      N+LG
Sbjct: 44  RVFASQKAGSNKSQRRAQPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLG 103

Query: 88  PSLADLLNNSSDSHYQYV 102
              ADLLNNSSDSHYQ++
Sbjct: 104 EKFADLLNNSSDSHYQFL 121

[Close]
BLAST of Lsi11G010000 vs. NCBI nr
Match: gi|567884039|ref|XP_006434578.1| (hypothetical protein CICLE_v10002209mg [Citrus clementina])

HSP 1 Score: 79.3 bits (194), Expect = 4.4e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1 

Query: 28  RVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEGWIGG----HHKKETNDHDNNNNNNILG 87
           RV+ASQ    N  ++R  PGVDTRIHW+N++EGWIGG     H+   N +      N+LG
Sbjct: 44  RVFASQKAGSNKSQRRAQPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLG 103

Query: 88  PSLADLLNNSSDSHYQYV 102
              ADLL+NSSDSHYQ++
Sbjct: 104 EKFADLLDNSSDSHYQFL 121

[Close]
BLAST of Lsi11G010000 vs. NCBI nr
Match: gi|694368497|ref|XP_009362458.1| (PREDICTED: dnaJ homolog subfamily B member 14-like [Pyrus x bretschneideri])

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 54/122 (44.26%), Postives = 65/122 (53.28%), Query Frame = 1 

Query: 2   ASPPIPNSLLSHTTFFHSPAHTFRTWR-----------------VYASQAPSPNNDRQRP 61
           A+PP      SHT F  SP  T  T R                 VYASQ PS   +R+R 
Sbjct: 5   AAPP----QASHTLFLRSPPATTTTTRARTATTTRRTRSHVSVHVYASQGPS---NRERA 64

Query: 62  PPGVDTRIHWQNQEEGWIGGHHKK----ETNDHDNNNNNNILGPSLADLLNNS-SDSHYQ 102
           PPGVDTRIHW+N +EGWIGG   +    E         +N+LG   ADLLN+S SDSHYQ
Sbjct: 65  PPGVDTRIHWENDDEGWIGGSSSRKEQAEQEPESEQQKSNLLGDKFADLLNDSISDSHYQ 119

The following BLAST results are available for this feature:
BLAST of Lsi11G010000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDHT_ARATH4.6e-0942.86NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana ... [more]
BLAST of Lsi11G010000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT25_CUCSA5.4e-3378.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042670 PE=4 SV=1[more]
A0A067GW77_CITSI8.1e-1352.56Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024973mg PE=4 SV=1[more]
V4SJB7_9ROSI3.1e-1251.28Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002209mg PE=4 SV=1[more]
A0A068U4U7_COFCA5.2e-1241.32Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00015938001 PE=4 SV=1[more]
A0A061EBG7_THECC6.9e-1255.26Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao GN=TCM_011554 PE=4 ... [more]
BLAST of Lsi11G010000 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G09350.12.6e-1042.86 Chaperone DnaJ-domain superfamily protein[more]
BLAST of Lsi11G010000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659066817|ref|XP_008462782.1|2.0e-3378.22PREDICTED: dnaJ homolog subfamily B member 12 [Cucumis melo][more]
gi|449439697|ref|XP_004137622.1|7.7e-3378.22PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [C... [more]
gi|568838327|ref|XP_006473166.1|1.2e-1252.56PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Citrus sinen... [more]
gi|567884039|ref|XP_006434578.1|4.4e-1251.28hypothetical protein CICLE_v10002209mg [Citrus clementina][more]
gi|694368497|ref|XP_009362458.1|5.8e-1244.26PREDICTED: dnaJ homolog subfamily B member 14-like [Pyrus x bretschneideri][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G010000.1Lsi11G010000.1mRNA