CmoCh04G029610 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G029610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Late embryogenesis abundant protein (LEA) family protein) (Pollen coat protein-like)
Location	Cmo_Chr04 : 20955104 .. 20955307 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATAGCTCGCAACAGATGAGCTTTCAGGCTGGAGAGGCCAAGGGCCAAGCTAAGGAGAAGACAAGCAATTTGATTGAGAAAGCTAGCAATGCAGCTCAATCAGCGAAGGAGACCGTGCAAGAGGCCGGCCAACAGATGGTGGCTAGGGCTCAAGGAGCTGCCGAGGCTGTGAAGGATGCCACCGGATTGAACAAATGA

mRNA sequence

ATGGCGGATAGCTCGCAACAGATGAGCTTTCAGGCTGGAGAGGCCAAGGGCCAAGCTAAGGAGAAGACAAGCAATTTGATTGAGAAAGCTAGCAATGCAGCTCAATCAGCGAAGGAGACCGTGCAAGAGGCCGGCCAACAGATGGTGGCTAGGGCTCAAGGAGCTGCCGAGGCTGTGAAGGATGCCACCGGATTGAACAAATGA

Coding sequence (CDS)

ATGGCGGATAGCTCGCAACAGATGAGCTTTCAGGCTGGAGAGGCCAAGGGCCAAGCTAAGGAGAAGACAAGCAATTTGATTGAGAAAGCTAGCAATGCAGCTCAATCAGCGAAGGAGACCGTGCAAGAGGCCGGCCAACAGATGGTGGCTAGGGCTCAAGGAGCTGCCGAGGCTGTGAAGGATGCCACCGGATTGAACAAATGA

Homology

[Close]

BLAST of CmoCh04G029610 vs. TrEMBL
Match: A0A0A0KVV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.8e-18
Identity = 52/67 (77.61%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          MADSSQ+MS+QAGEAKGQ +EK SNL++ A+NAAQSAKET+QEAGQQ++A+AQGAAEA+K
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh04G029610 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.9e-17
Identity = 51/67 (76.12%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          MAD+SQ MS+Q GEAKGQA+EK SN++EKAS+AAQSAKE++QE GQQM A+AQGAA+AVK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh04G029610 vs. TrEMBL
Match: W9RDZ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009672 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-16
Identity = 50/67 (74.63%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          MADSS+++S+ AGEAKGQA EK SN+++KASN AQSAKE+VQEAGQQM A+AQGA EAVK
Sbjct: 1  MADSSEKISYHAGEAKGQANEKASNILDKASNTAQSAKESVQEAGQQMKAKAQGATEAVK 60

Query: 61 DATGLNK 68
          +ATG+NK
Sbjct: 61 NATGINK 67

[Close]

BLAST of CmoCh04G029610 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.1e-15
Identity = 48/67 (71.64%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          MAD+S++MS+  GEAKGQA+EK SNL++KA + AQSAKE++QEAGQQM A+AQGAA+AVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh04G029610 vs. TrEMBL
Match: U5FMZ3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s14330g PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.4e-15
Identity = 48/67 (71.64%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          MAD++Q+MSFQAGEAKGQA+EK S L+++A NAAQSAKE+VQEAGQQ+++ AQGA E VK
Sbjct: 1  MADNTQKMSFQAGEAKGQAQEKASTLMDRAGNAAQSAKESVQEAGQQVMSTAQGAVEGVK 60

Query: 61 DATGLNK 68
          +ATG+NK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of CmoCh04G029610 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-16
Identity = 43/67 (64.18%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          M+++SQ MSF AG+AKGQ +EK SNLI+KASNAAQSAKE++QE GQQ+  +AQGA+E +K
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATGLNK 68
          + TG++K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of CmoCh04G029610 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-15
Identity = 42/67 (62.69%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          M+ +SQ +SFQAG+AKGQ +EK S +++KASNAAQSAKE+++E GQQ+  +AQGA E+VK
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATGLNK 68
          +ATG+NK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of CmoCh04G029610 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 66.2 bits (160), Expect = 8.5e-12
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 3  DSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVKDA 62
          D+ Q  S+QAG+A GQ KEK   +++KA +AA SA++++Q+ GQQM  +AQGAA+ VKD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TGLNK 68
          TG+NK
Sbjct: 62 TGMNK 66

[Close]

BLAST of CmoCh04G029610 vs. TAIR10
Match: AT5G15970.1 (AT5G15970.1 stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6))

HSP 1 Score: 47.0 bits (110), Expect = 5.4e-06
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 9  SFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVKDATGLNK 68
          +FQAG+A G+A+EK++ L++KA +AA +A  + Q+AG+ +   A G    VKD TGLNK
Sbjct: 8  AFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTGLNK 66

[Close]

BLAST of CmoCh04G029610 vs. NCBI nr
Match: gi|659119050|ref|XP_008459448.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-19
Identity = 55/67 (82.09%), Postives = 66/67 (98.51%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          MADSSQ+MS+QAGEAKGQA+EK SNL++KASNAAQSAKET+QEAGQQM+A+AQGAA+A+K
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh04G029610 vs. NCBI nr
Match: gi|449447460|ref|XP_004141486.1| (PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 9.8e-18
Identity = 52/67 (77.61%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          MADSSQ+MS+QAGEAKGQ +EK SNL++ A+NAAQSAKET+QEAGQQ++A+AQGAAEA+K
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh04G029610 vs. NCBI nr
Match: gi|449469355|ref|XP_004152386.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 51/67 (76.12%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          MAD+SQ MS+Q GEAKGQA+EK SN++EKAS+AAQSAKE++QE GQQM A+AQGAA+AVK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh04G029610 vs. NCBI nr
Match: gi|703115476|ref|XP_010100902.1| (hypothetical protein L484_009672 [Morus notabilis])

HSP 1 Score: 91.3 bits (225), Expect = 7.0e-16
Identity = 50/67 (74.63%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          MADSS+++S+ AGEAKGQA EK SN+++KASN AQSAKE+VQEAGQQM A+AQGA EAVK
Sbjct: 1  MADSSEKISYHAGEAKGQANEKASNILDKASNTAQSAKESVQEAGQQMKAKAQGATEAVK 60

Query: 61 DATGLNK 68
          +ATG+NK
Sbjct: 61 NATGINK 67

[Close]

BLAST of CmoCh04G029610 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 49/67 (73.13%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MADSSQQMSFQAGEAKGQAKEKTSNLIEKASNAAQSAKETVQEAGQQMVARAQGAAEAVK 60
          MAD+SQ+MS+  GEAKGQA+EK SN+++KAS+ AQSAKE++QEAGQQM A+AQGAA+AVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

The following BLAST results are available for this feature:

BLAST of CmoCh04G029610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G029610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVV6_CUCSA	6.8e-18	77.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1	[more]
A0A0A0KPD4_CUCSA	9.9e-17	76.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]
W9RDZ1_9ROSA	4.9e-16	74.63	Uncharacterized protein OS=Morus notabilis GN=L484_009672 PE=4 SV=1	[more]
A0A0A0KRE1_CUCSA	4.1e-15	71.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1	[more]
U5FMZ3_POPTR	5.4e-15	71.64	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s14330g PE=4 SV=1	[more]

BLAST of CmoCh04G029610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53820.1	2.6e-16	64.18	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G38760.1	2.2e-15	62.69	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	8.5e-12	53.85	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G15970.1	5.4e-06	47.46	stress-responsive protein (KIN2) / stress-induced protein (KIN2) / c...	[more]

BLAST of CmoCh04G029610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119050\|ref\|XP_008459448.1\|	3.0e-19	82.09	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|449447460\|ref\|XP_004141486.1\|	9.8e-18	77.61	PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus]	[more]
gi\|449469355\|ref\|XP_004152386.1\|	1.4e-16	76.12	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|703115476\|ref\|XP_010100902.1\|	7.0e-16	74.63	hypothetical protein L484_009672 [Morus notabilis]	[more]
gi\|659073373\|ref\|XP_008437025.1\|	1.2e-15	73.13	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G029610.1	CmoCh04G029610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 20..47 scor
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 2..67 score: 3.9
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 2..67 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G029610	Cucsa.238340	Cucumber (Gy14) v1	cgycmoB0663
CmoCh04G029610	CmaCh15G002020	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G029610	Cla016475	Watermelon (97103) v1	cmowmB730
CmoCh04G029610	Csa5G643250	Cucumber (Chinese Long) v2	cmocuB714
CmoCh04G029610	MELO3C022080	Melon (DHL92) v3.5.1	cmomeB615
CmoCh04G029610	CSPI05G29750	Wild cucumber (PI 183967)	cmocpiB722
CmoCh04G029610	Lsi03G002040	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G029610	Cp4.1LG01g22210	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G029610	MELO3C022081.2	Melon (DHL92) v3.6.1	cmomedB704
CmoCh04G029610	CsaV3_5G038860	Cucumber (Chinese Long) v3	cmocucB0846
CmoCh04G029610	Cla97C11G211950	Watermelon (97103) v2	cmowmbB697
CmoCh04G029610	Bhi06G000050	Wax gourd	cmowgoB0834
CmoCh04G029610	Bhi06G000224	Wax gourd	cmowgoB0836
CmoCh04G029610	CsGy5G029170	Cucumber (Gy14) v2	cgybcmoB625

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G029610	CmoCh15G002150	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G029610	Wax gourd	cmowgoB0879
CmoCh04G029610	Cucurbita moschata (Rifu)	cmocmoB449
CmoCh04G029610	Cucumber (Gy14) v1	cgycmoB0350
CmoCh04G029610	Cucurbita maxima (Rimu)	cmacmoB659
CmoCh04G029610	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G029610	Wild cucumber (PI 183967)	cmocpiB719
CmoCh04G029610	Cucumber (Chinese Long) v2	cmocuB709
CmoCh04G029610	Melon (DHL92) v3.5.1	cmomeB624
CmoCh04G029610	Watermelon (Charleston Gray)	cmowcgB621
CmoCh04G029610	Watermelon (Charleston Gray)	cmowcgB650
CmoCh04G029610	Watermelon (97103) v1	cmowmB714
CmoCh04G029610	Cucurbita pepo (Zucchini)	cmocpeB654
CmoCh04G029610	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G029610	Bottle gourd (USVL1VR-Ls)	cmolsiB629
CmoCh04G029610	Cucumber (Gy14) v2	cgybcmoB525
CmoCh04G029610	Melon (DHL92) v3.6.1	cmomedB713
CmoCh04G029610	Silver-seed gourd	carcmoB0033
CmoCh04G029610	Silver-seed gourd	carcmoB0370
CmoCh04G029610	Silver-seed gourd	carcmoB0863
CmoCh04G029610	Cucumber (Chinese Long) v3	cmocucB0838
CmoCh04G029610	Watermelon (97103) v2	cmowmbB723