Cucsa.238340 (gene) Cucumber (Gy14) v1

NameCucsa.238340
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionLate embryogenesis abundant protein (LEA) family protein
Locationscaffold02023 : 931442 .. 931645 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATAGTTCCCAAAAGATGAGCTACCAAGCTGGAGAAGCCAAAGGTCAGGTGGAAGAGAAGGCGAGCAATCTCATGGACAACGCAAACAATGCAGCTCAATCGGCTAAAGAGACGATACAGGAGGCAGGCCAACAGGTGATGGCAAAGGCTCAAGGAGCAGCCGAAGCTATCAAGGATGCAACTGGCATGAACAAATAA

mRNA sequence

ATGGCGGATAGTTCCCAAAAGATGAGCTACCAAGCTGGAGAAGCCAAAGGTCAGGTGGAAGAGAAGGCGAGCAATCTCATGGACAACGCAAACAATGCAGCTCAATCGGCTAAAGAGACGATACAGGAGGCAGGCCAACAGGTGATGGCAAAGGCTCAAGGAGCAGCCGAAGCTATCAAGGATGCAACTGGCATGAACAAATAA

Coding sequence (CDS)

ATGGCGGATAGTTCCCAAAAGATGAGCTACCAAGCTGGAGAAGCCAAAGGTCAGGTGGAAGAGAAGGCGAGCAATCTCATGGACAACGCAAACAATGCAGCTCAATCGGCTAAAGAGACGATACAGGAGGCAGGCCAACAGGTGATGGCAAAGGCTCAAGGAGCAGCCGAAGCTATCAAGGATGCAACTGGCATGAACAAATAA

Protein sequence

MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIKDATGMNK*
BLAST of Cucsa.238340 vs. Swiss-Prot
Match: KIN2_ARATH (Stress-induced protein KIN2 OS=Arabidopsis thaliana GN=KIN2 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1

Query: 5  SQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIKDATG 64
          + K ++QAG+A G+ EEK++ L+D A +AA +A  + Q+AG+ +   A G    +KD TG
Sbjct: 4  TNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTG 63

Query: 65 MNK 68
          +NK
Sbjct: 64 LNK 66

BLAST of Cucsa.238340 vs. Swiss-Prot
Match: KIN1_ARATH (Stress-induced protein KIN1 OS=Arabidopsis thaliana GN=KIN1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.0e-07
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1

Query: 5  SQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIKDATG 64
          + K ++QAG+  G+ EEK++ L+D A +AA  A    Q+AG+ V   A G    +KD TG
Sbjct: 4  TNKNAFQAGQTAGKAEEKSNVLLDKAKDAAAGAGAGAQQAGKSVSDAAAGGVNFVKDKTG 63

Query: 65 MNK 68
          +NK
Sbjct: 64 LNK 66

BLAST of Cucsa.238340 vs. Swiss-Prot
Match: LEA2_CICAR (Late embryogenesis abundant protein 2 OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.0e-06
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1

Query: 4  SSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIKDAT 63
          +S   SY+AGEAKG+ EEK + ++ N  + AQ+AKE  Q+A Q    K    A+A K+ T
Sbjct: 2  TSHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKT 61


HSP 2 Score: 46.6 bits (109), Expect = 1.3e-04
Identity = 26/71 (36.62%), Postives = 37/71 (52.11%), Query Frame = 1

Query: 4  SSQKMSYQAGEAKGQVEEKASNLM-----------DNANNAAQSAKETIQEAGQQVMAKA 63
          +S   SY+AGEAKG+ EEK + ++           + A  AAQ+AK+   +  Q    K 
Sbjct: 2  TSHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKT 61


HSP 3 Score: 40.0 bits (92), Expect = 1.2e-02
Identity = 20/66 (30.30%), Postives = 35/66 (53.03%), Query Frame = 1

Query: 4   SSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKET----IQEAGQQVMAKAQGAAEAI 63
           ++Q    +A +  G+ +EK S +  +    AQS K+     +Q+ G++    AQGA +A+
Sbjct: 75  TTQATKEKAQDTTGRAKEKGSEMGQSTKETAQSGKDNSAGFLQQTGEKAKGMAQGATDAV 134

Query: 64  KDATGM 66
           K   GM
Sbjct: 135 KQTFGM 140


HSP 4 Score: 40.0 bits (92), Expect = 1.2e-02
Identity = 28/90 (31.11%), Postives = 38/90 (42.22%), Query Frame = 1

Query: 4  SSQKMSYQAGEAKGQVEEKASNLM----------------------DNANNAAQSAKETI 63
          +S   SY+AGEAKG+ EEK + ++                      D  +  AQ+AKE  
Sbjct: 2  TSHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKT 61

Query: 64 QEAGQQVMAKAQGAAEAIK----DATGMNK 68
          Q+  Q    K Q   +A K    D TG  K
Sbjct: 62 QQTAQAAKDKTQQTTQATKEKAQDTTGRAK 91

BLAST of Cucsa.238340 vs. TrEMBL
Match: A0A0A0KVV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

BLAST of Cucsa.238340 vs. TrEMBL
Match: B9H3T9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s10750g PE=4 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 5.1e-21
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          MAD++QKMSYQAGE KGQ +EKASNLMD A+NAAQSAKE++QEAGQQV AK QGA E +K
Sbjct: 1  MADNTQKMSYQAGETKGQAQEKASNLMDRADNAAQSAKESVQEAGQQVRAKTQGAVEGVK 60

Query: 61 DATGMNK 68
          +ATGMNK
Sbjct: 61 NATGMNK 67

BLAST of Cucsa.238340 vs. TrEMBL
Match: B9H3U3_POPTR (ABA-inducible family protein OS=Populus trichocarpa GN=POPTR_0004s10690g PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.7e-21
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          MAD++QKMSYQAGE KGQ +EKASNLMD A+NAAQSAKE++QEAGQQV  KAQGA E +K
Sbjct: 1  MADNTQKMSYQAGETKGQAQEKASNLMDRADNAAQSAKESVQEAGQQVREKAQGAVEGVK 60

Query: 61 DATGMNK 68
          +ATGMNK
Sbjct: 61 NATGMNK 67

BLAST of Cucsa.238340 vs. TrEMBL
Match: B9H3U1_POPTR (ABA-inducible family protein OS=Populus trichocarpa GN=POPTR_0004s10710g PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.7e-21
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          MAD++QKMSYQAGE KGQ +EKASNLMD A+NAAQSAKE++QEAGQQV  KAQGA E +K
Sbjct: 1  MADNTQKMSYQAGEVKGQAQEKASNLMDRADNAAQSAKESVQEAGQQVREKAQGAVEGVK 60

Query: 61 DATGMNK 68
          +ATGMNK
Sbjct: 61 NATGMNK 67

BLAST of Cucsa.238340 vs. TrEMBL
Match: U5FJW3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s14320g PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-20
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          MAD++QKMS+QAGEAKGQV+EKAS LMD A NAAQSAKE++QEAGQQVM+ AQGA E +K
Sbjct: 1  MADNTQKMSFQAGEAKGQVQEKASTLMDRAGNAAQSAKESVQEAGQQVMSTAQGAVEGLK 60

Query: 61 DATGMNK 68
          +ATGMNK
Sbjct: 61 NATGMNK 67

BLAST of Cucsa.238340 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 94.0 bits (232), Expect = 3.9e-20
Identity = 43/67 (64.18%), Postives = 58/67 (86.57%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          M+ +SQ +S+QAG+AKGQ +EKAS +MD A+NAAQSAKE+++E GQQ+  KAQGA E++K
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATGMNK 68
          +ATGMNK
Sbjct: 61 NATGMNK 67

BLAST of Cucsa.238340 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-19
Identity = 44/67 (65.67%), Postives = 58/67 (86.57%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          M+++SQ MS+ AG+AKGQ +EKASNL+D A+NAAQSAKE+IQE GQQ+  KAQGA+E IK
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATGMNK 68
          + TG++K
Sbjct: 61 EKTGISK 67

BLAST of Cucsa.238340 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-16
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 1

Query: 3  DSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIKDA 62
          D+ Q  SYQAG+A GQ +EKA  +MD A +AA SA++++Q+ GQQ+  KAQGAA+ +KD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TGMNK 68
          TGMNK
Sbjct: 62 TGMNK 66

BLAST of Cucsa.238340 vs. TAIR10
Match: AT5G15970.1 (AT5G15970.1 stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6))

HSP 1 Score: 56.6 bits (135), Expect = 6.9e-09
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1

Query: 5  SQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIKDATG 64
          + K ++QAG+A G+ EEK++ L+D A +AA +A  + Q+AG+ +   A G    +KD TG
Sbjct: 4  TNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTG 63

Query: 65 MNK 68
          +NK
Sbjct: 64 LNK 66

BLAST of Cucsa.238340 vs. TAIR10
Match: AT5G15960.1 (AT5G15960.1 stress-responsive protein (KIN1) / stress-induced protein (KIN1))

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-08
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1

Query: 5  SQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIKDATG 64
          + K ++QAG+  G+ EEK++ L+D A +AA  A    Q+AG+ V   A G    +KD TG
Sbjct: 4  TNKNAFQAGQTAGKAEEKSNVLLDKAKDAAAGAGAGAQQAGKSVSDAAAGGVNFVKDKTG 63

Query: 65 MNK 68
          +NK
Sbjct: 64 LNK 66

BLAST of Cucsa.238340 vs. NCBI nr
Match: gi|449447460|ref|XP_004141486.1| (PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

BLAST of Cucsa.238340 vs. NCBI nr
Match: gi|659119050|ref|XP_008459448.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-25
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          MADSSQKMSYQAGEAKGQ EEKASNLMD A+NAAQSAKETIQEAGQQ+MAKAQGAA+AIK
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

BLAST of Cucsa.238340 vs. NCBI nr
Match: gi|658013078|ref|XP_008341834.1| (PREDICTED: stress-induced protein KIN2-like [Malus domestica])

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-21
Identity = 53/67 (79.10%), Postives = 62/67 (92.54%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          MAD+SQKMSYQAGEAKGQ +EKAS +MD ANNAAQSAKET+Q+AGQ + AKAQGAA+A+K
Sbjct: 1  MADNSQKMSYQAGEAKGQAQEKASGMMDKANNAAQSAKETMQDAGQNMQAKAQGAADAVK 60

Query: 61 DATGMNK 68
          +ATGMNK
Sbjct: 61 NATGMNK 67

BLAST of Cucsa.238340 vs. NCBI nr
Match: gi|566165971|ref|XP_002305297.2| (hypothetical protein POPTR_0004s10750g [Populus trichocarpa])

HSP 1 Score: 107.8 bits (268), Expect = 7.4e-21
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          MAD++QKMSYQAGE KGQ +EKASNLMD A+NAAQSAKE++QEAGQQV AK QGA E +K
Sbjct: 1  MADNTQKMSYQAGETKGQAQEKASNLMDRADNAAQSAKESVQEAGQQVRAKTQGAVEGVK 60

Query: 61 DATGMNK 68
          +ATGMNK
Sbjct: 61 NATGMNK 67

BLAST of Cucsa.238340 vs. NCBI nr
Match: gi|658013080|ref|XP_008341835.1| (PREDICTED: late embryogenesis abundant protein 2-like [Malus domestica])

HSP 1 Score: 107.8 bits (268), Expect = 7.4e-21
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 1

Query: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60
          MAD+SQKMSY AGEAKGQ +EKAS +MD ANNAAQSAKET+Q+AGQ + AKAQGAA+A+K
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASGMMDKANNAAQSAKETMQDAGQNMQAKAQGAADAVK 60

Query: 61 DATGMNK 68
          +ATGMNK
Sbjct: 61 NATGMNK 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KIN2_ARATH1.2e-0741.27Stress-induced protein KIN2 OS=Arabidopsis thaliana GN=KIN2 PE=2 SV=1[more]
KIN1_ARATH6.0e-0741.27Stress-induced protein KIN1 OS=Arabidopsis thaliana GN=KIN1 PE=2 SV=1[more]
LEA2_CICAR1.0e-0643.33Late embryogenesis abundant protein 2 OS=Cicer arietinum PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KVV6_CUCSA1.3e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1[more]
B9H3T9_POPTR5.1e-2177.61Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s10750g PE=4 SV=2[more]
B9H3U3_POPTR6.7e-2177.61ABA-inducible family protein OS=Populus trichocarpa GN=POPTR_0004s10690g PE=4 SV... [more]
B9H3U1_POPTR6.7e-2177.61ABA-inducible family protein OS=Populus trichocarpa GN=POPTR_0004s10710g PE=4 SV... [more]
U5FJW3_POPTR1.1e-2077.61Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s14320g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G38760.13.9e-2064.18 Late embryogenesis abundant protein (LEA) family protein[more]
AT5G53820.11.1e-1965.67 Late embryogenesis abundant protein (LEA) family protein[more]
AT3G02480.12.6e-1656.92 Late embryogenesis abundant protein (LEA) family protein[more]
AT5G15970.16.9e-0941.27 stress-responsive protein (KIN2) / stress-induced protein (KIN2) / c... [more]
AT5G15960.13.4e-0841.27 stress-responsive protein (KIN1) / stress-induced protein (KIN1)[more]
Match NameE-valueIdentityDescription
gi|449447460|ref|XP_004141486.1|1.8e-27100.00PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus][more]
gi|659119050|ref|XP_008459448.1|4.9e-2592.54PREDICTED: stress-induced protein KIN2-like [Cucumis melo][more]
gi|658013078|ref|XP_008341834.1|1.9e-2179.10PREDICTED: stress-induced protein KIN2-like [Malus domestica][more]
gi|566165971|ref|XP_002305297.2|7.4e-2177.61hypothetical protein POPTR_0004s10750g [Populus trichocarpa][more]
gi|658013080|ref|XP_008341835.1|7.4e-2177.61PREDICTED: late embryogenesis abundant protein 2-like [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.238340.1Cucsa.238340.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 20..47
scor
NoneNo IPR availablePANTHERPTHR34191FAMILY NOT NAMEDcoord: 2..67
score: 3.3
NoneNo IPR availablePANTHERPTHR34191:SF2STRESS-INDUCED PROTEIN KIN1-RELATEDcoord: 2..67
score: 3.3

The following gene(s) are paralogous to this gene:

None