Lsi03G002060 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G002060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Late embryogenesis abundant protein (LEA) family protein
Location	chr03 : 2669807 .. 2670010 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATAGTTCTCAAAAGATGAGCTACCATGCCGGAGAAGTCAAAGGTCAGGTTGAAGAGAAGGCGAGTAATCTAATAGAGAAGGCAAGCAATGCAGCTCAATCGGTGAAAGAGACAGTGCAAGAGACAGGCCAACAGATGATGGCGAAGGCTCAAGGAGCAGCAGAGGCTATCAAGGATGCCACCGGCCTCAACAAATGA

mRNA sequence

ATGGCCGATAGTTCTCAAAAGATGAGCTACCATGCCGGAGAAGTCAAAGGTCAGGTTGAAGAGAAGGCGAGTAATCTAATAGAGAAGGCAAGCAATGCAGCTCAATCGGTGAAAGAGACAGTGCAAGAGACAGGCCAACAGATGATGGCGAAGGCTCAAGGAGCAGCAGAGGCTATCAAGGATGCCACCGGCCTCAACAAATGA

Coding sequence (CDS)

ATGGCCGATAGTTCTCAAAAGATGAGCTACCATGCCGGAGAAGTCAAAGGTCAGGTTGAAGAGAAGGCGAGTAATCTAATAGAGAAGGCAAGCAATGCAGCTCAATCGGTGAAAGAGACAGTGCAAGAGACAGGCCAACAGATGATGGCGAAGGCTCAAGGAGCAGCAGAGGCTATCAAGGATGCCACCGGCCTCAACAAATGA

Protein sequence

MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIKDATGLNK

Homology

[Close]

BLAST of Lsi03G002060 vs. TrEMBL
Match: A0A0A0KVV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-20
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          MADSSQKMSY AGE KGQVEEKASNL++ A+NAAQS KET+QE GQQ+MAKAQGAAEAIK
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi03G002060 vs. TrEMBL
Match: W9RDZ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009672 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.0e-18
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          MADSS+K+SYHAGE KGQ  EKASN+++KASN AQS KE+VQE GQQM AKAQGA EA+K
Sbjct: 1  MADSSEKISYHAGEAKGQANEKASNILDKASNTAQSAKESVQEAGQQMKAKAQGATEAVK 60

Query: 61 DATGLNK 68
          +ATG+NK
Sbjct: 61 NATGINK 67

[Close]

BLAST of Lsi03G002060 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-17
Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          MAD+S+KMSYH GE KGQ +EKASNL++KA + AQS KE++QE GQQM AKAQGAA+A+K
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi03G002060 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.4e-17
Identity = 49/67 (73.13%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          MAD+SQ MSY  GE KGQ +EKASN++EKAS+AAQS KE++QE GQQM AKAQGAA+A+K
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi03G002060 vs. TrEMBL
Match: A0A0A0KXN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.4e-17
Identity = 49/62 (79.03%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          MAD+SQKMSYHAGE KGQ +EK SN+++KAS+AAQS KE+VQETGQQMMAKAQGAA+A+K
Sbjct: 1  MADNSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVK 60

Query: 61 DA 63
          DA
Sbjct: 61 DA 62

[Close]

BLAST of Lsi03G002060 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-17
Identity = 43/67 (64.18%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          M+++SQ MS++AG+ KGQ +EKASNLI+KASNAAQS KE++QE GQQ+  KAQGA+E IK
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATGLNK 68
          + TG++K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of Lsi03G002060 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-16
Identity = 40/67 (59.70%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          M+ +SQ +S+ AG+ KGQ +EKAS +++KASNAAQS KE+++ETGQQ+  KAQGA E++K
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATGLNK 68
          +ATG+NK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of Lsi03G002060 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-12
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 3  DSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIKDA 62
          D+ Q  SY AG+  GQ +EKA  +++KA +AA S ++++Q+TGQQM  KAQGAA+ +KD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TGLNK 68
          TG+NK
Sbjct: 62 TGMNK 66

[Close]

BLAST of Lsi03G002060 vs. NCBI nr
Match: gi|659119050|ref|XP_008459448.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 7.3e-21
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          MADSSQKMSY AGE KGQ EEKASNL++KASNAAQS KET+QE GQQMMAKAQGAA+AIK
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi03G002060 vs. NCBI nr
Match: gi|449447460|ref|XP_004141486.1| (PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-20
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          MADSSQKMSY AGE KGQVEEKASNL++ A+NAAQS KET+QE GQQ+MAKAQGAAEAIK
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi03G002060 vs. NCBI nr
Match: gi|703115476|ref|XP_010100902.1| (hypothetical protein L484_009672 [Morus notabilis])

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-18
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          MADSS+K+SYHAGE KGQ  EKASN+++KASN AQS KE+VQE GQQM AKAQGA EA+K
Sbjct: 1  MADSSEKISYHAGEAKGQANEKASNILDKASNTAQSAKESVQEAGQQMKAKAQGATEAVK 60

Query: 61 DATGLNK 68
          +ATG+NK
Sbjct: 61 NATGINK 67

[Close]

BLAST of Lsi03G002060 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 7.5e-18
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          MAD+SQKMSYH GE KGQ +EKASN+++KAS+ AQS KE++QE GQQM AKAQGAA+A+K
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lsi03G002060 vs. NCBI nr
Match: gi|1009127017|ref|XP_015880470.1| (PREDICTED: stress-induced protein KIN2-like [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 1  MADSSQKMSYHAGEVKGQVEEKASNLIEKASNAAQSVKETVQETGQQMMAKAQGAAEAIK 60
          MAD+SQKMSYHAGE KG+ +EKA N+++KASNAAQS KE+VQE GQQM AKAQGAA+A+K
Sbjct: 1  MADNSQKMSYHAGEAKGRAQEKAGNMMDKASNAAQSAKESVQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGL 66
          DATG+
Sbjct: 61 DATGM 65

The following BLAST results are available for this feature:

BLAST of Lsi03G002060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G002060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVV6_CUCSA	1.9e-20	83.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1	[more]
W9RDZ1_9ROSA	4.0e-18	74.63	Uncharacterized protein OS=Morus notabilis GN=L484_009672 PE=4 SV=1	[more]
A0A0A0KRE1_CUCSA	2.6e-17	71.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1	[more]
A0A0A0KPD4_CUCSA	3.4e-17	73.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]
A0A0A0KXN2_CUCSA	3.4e-17	79.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1	[more]

BLAST of Lsi03G002060 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53820.1	2.3e-17	64.18	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G38760.1	2.6e-16	59.70	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	1.0e-12	52.31	Late embryogenesis abundant protein (LEA) family protein	[more]

BLAST of Lsi03G002060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119050\|ref\|XP_008459448.1\|	7.3e-21	85.07	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|449447460\|ref\|XP_004141486.1\|	2.8e-20	83.58	PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus]	[more]
gi\|703115476\|ref\|XP_010100902.1\|	5.7e-18	74.63	hypothetical protein L484_009672 [Morus notabilis]	[more]
gi\|659073373\|ref\|XP_008437025.1\|	7.5e-18	73.13	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|1009127017\|ref\|XP_015880470.1\|	1.7e-17	75.38	PREDICTED: stress-induced protein KIN2-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G002060.1	Lsi03G002060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 27..47 scor
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 2..67 score: 1.0
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 2..67 score: 1.0
None	No IPR available	unknown	SSF58113	Apolipoprotein A-I	coord: 3..61 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G002060	Csa5G643260	Cucumber (Chinese Long) v2	culsiB353
Lsi03G002060	CSPI05G29760	Wild cucumber (PI 183967)	cpilsiB357
Lsi03G002060	Cucsa.238340	Cucumber (Gy14) v1	cgylsiB387
Lsi03G002060	Cla016482	Watermelon (97103) v1	lsiwmB278
Lsi03G002060	Bhi06G000224	Wax gourd	lsiwgoB312

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G002060	Wild cucumber (PI 183967)	cpilsiB362
Lsi03G002060	Cucumber (Chinese Long) v2	culsiB359
Lsi03G002060	Melon (DHL92) v3.5.1	lsimeB232
Lsi03G002060	Melon (DHL92) v3.5.1	lsimeB233
Lsi03G002060	Melon (DHL92) v3.5.1	lsimeB238
Lsi03G002060	Watermelon (Charleston Gray)	lsiwcgB245
Lsi03G002060	Watermelon (Charleston Gray)	lsiwcgB226
Lsi03G002060	Watermelon (97103) v1	lsiwmB258
Lsi03G002060	Cucumber (Gy14) v2	cgyblsiB325
Lsi03G002060	Melon (DHL92) v3.6.1	lsimedB242
Lsi03G002060	Melon (DHL92) v3.6.1	lsimedB243
Lsi03G002060	Melon (DHL92) v3.6.1	lsimedB249
Lsi03G002060	Silver-seed gourd	carlsiB017
Lsi03G002060	Silver-seed gourd	carlsiB236
Lsi03G002060	Cucumber (Chinese Long) v3	cuclsiB378
Lsi03G002060	Cucumber (Chinese Long) v3	cuclsiB384
Lsi03G002060	Watermelon (97103) v2	lsiwmbB222
Lsi03G002060	Watermelon (97103) v2	lsiwmbB238
Lsi03G002060	Wax gourd	lsiwgoB310
Lsi03G002060	Wax gourd	lsiwgoB342
Lsi03G002060	Cucumber (Gy14) v1	cgylsiB464
Lsi03G002060	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G002060	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G002060	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G002060	Cucurbita moschata (Rifu)	cmolsiB363
Lsi03G002060	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G002060	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G002060	Cucurbita pepo (Zucchini)	cpelsiB339