CmoCh15G002150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G002150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Late embryogenesis abundant protein (LEA) family protein
Location	Cmo_Chr15 : 1049459 .. 1051203 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTCAAAAGATGAGCTTTGAAGCGGGAGAAGCCAAGGGCCAAGCCAAAGAAAAAACGAGCAACCTCATAGAGAAGGCAAGCGATACAGCTCAATCAACCAAAGAGACGGTGCAAGAAGCAGGCCAACAAATGATGGCTAAGGCTCAGGGAGCCGTGGAGGCTATCAAGGACAACACCGGTCTCAACAAATGAACCCTGTTATTTAGTGGCTCATCTCTTTGGCCTTGGACGAAGCTAACCAAGCTTCCTTTTTCAATTAATAGTTCTCCCTCATTATATTTAATTATATTCGTCAGATTTTAATTTTTTTCATTCTTTACGGATTTTTGGATACTTTATATATTAATTCAAATTTAAAAATTTTTAAAAATTAAAAGAGAAAATAACTAGGGAGACATTTAAATTTTAGTAAAATTTCATTTATTTATTGGTTTTTAGGGAAATATTATTTAAAATAACCAATATTAATTTTAATTTATATTGTGCAGTTTAAAATATAAAAATATATGAGAAAATGGCTAGTTTGTAATTATTATTATAAAAAAATGCTTCTGTTAAATAATTTATTTACTAACATTATAAATTTTTTATTCAAGGTTAAAACTGTAATTTAAACTTGGAAAGGATTTATATATTATCAATTTAGGTTGAATTTATAAATTTTTAATCATTGTATAATATATTTTAATTTAATATAATGTTTAATATCTATTTAATATTTTCTTTTCAAATTCTAACAAATTAGATACATATAAAATAAAAAATATTTATATGAGTTTTCTCCTAATTTATTTATAACCGTTTTTTTTTTTTCATGAGAACAATTTTTATTAATAAAAATAAAATTTAAAACCCGTTTTCAAAATTGGTTTTTAAAAATTACCTACAAAACTTAAAATTTAAAAAATAAATTGACTAAACTTTAAAATTAACGAAAAATAAATAAAAATGGATAATAAATAAAGTCCCTTTATTTTATTTGAGTTAAAATATTCTTTGTCGACCAAAAACACATGACAGAAATATCCCCCATAACATAAACTATTACCATAATGCCATTCTGACTCATTCCCAAAAAAACAGCGGTAAAAAAAAAACTAATTGATCATTGGAACACTTCTTGCTTCTCCCTGGTCAAATGGGCCTCTATGGACAACTCCAATGAAAATTAGACACGTGGAGCTATGATTCAATTATCGTATTACATGTGTCACAAACTAATTTAACCTAACCGTATAAATCAACAAACTAGAGCCTAATTTAACCTAACCGTATAAATCAACAAACTAGAGCCATATTCACACACAAACTAATTTAACCTAACCGTATAAATCAACAAACTAGAGCCTAATTTAACCTAACCGTATAAATCAACAAACTAGAGCCATATTCACACATGTGGTTTCCAAATTCTCATTCTTTTTTTCTTCTGGTGTTTTTGAATCTTTATCAATAAAGAATTGAAATGGCGGATAACTCGAGTCAGATGAGCTACCGTGTCGGAGAGGCCAAGGGTCAAACTCAGGTTTTCTATTCACTGACGTCTTGGTTTGAATCACATTTGTTTTTAGCTATTGATAATACATCGGTAACATGTTAATTTGTATCCTTAATATAGGAGAAAGTGAGCAATATGAACGACACGGTAGCTAAAGAGTCGGGTACAAGAGACAGGCCAACAAATGAAGGCTAAGGCACAAGGAGCTGCAGATGCTGTTAAGGATGCCGTGAACAAATGA

mRNA sequence

ATGGAATCTCAAAAGATGAGCTTTGAAGCGGGAGAAGCCAAGGGCCAAGCCAAAGAAAAAACGAGCAACCTCATAGAGAAGGCAAGCGATACAGCTCAATCAACCAAAGAGACGGTGCAAGAAGCAGGCCAACAAATGATGGCTAAGGCTCAGGGAGCCGTGGAGGCTATCAAGGACAACACCGGCCAACAAATGAAGGCTAAGGCACAAGGAGCTGCAGATGCTGTTAAGGATGCCGTGAACAAATGA

Coding sequence (CDS)

ATGGAATCTCAAAAGATGAGCTTTGAAGCGGGAGAAGCCAAGGGCCAAGCCAAAGAAAAAACGAGCAACCTCATAGAGAAGGCAAGCGATACAGCTCAATCAACCAAAGAGACGGTGCAAGAAGCAGGCCAACAAATGATGGCTAAGGCTCAGGGAGCCGTGGAGGCTATCAAGGACAACACCGGCCAACAAATGAAGGCTAAGGCACAAGGAGCTGCAGATGCTGTTAAGGATGCCGTGAACAAATGA

Homology

[Close]

BLAST of CmoCh15G002150 vs. TrEMBL
Match: A0A0A0KVV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.7e-13
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1


Query: 3  SQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKDNTG 62
          SQKMS++AGEAKGQ +EK SNL++ A++ AQS KET+QEAGQQ+MAKAQGA EAIKD TG
Sbjct: 5  SQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIKDATG 64

[Close]

BLAST of CmoCh15G002150 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-12
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 3  SQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKDNTG 62
          S+KMS+  GEAKGQA+EK SNL++KA DTAQS KE++QEAGQQM AKAQGA +A+KD TG
Sbjct: 5  SEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVKDATG 64

[Close]

BLAST of CmoCh15G002150 vs. TrEMBL
Match: W9RDZ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009672 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-12
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 1


Query: 3  SQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKDNTG 62
          S+K+S+ AGEAKGQA EK SN+++KAS+TAQS KE+VQEAGQQM AKAQGA EA+K+ TG
Sbjct: 5  SEKISYHAGEAKGQANEKASNILDKASNTAQSAKESVQEAGQQMKAKAQGATEAVKNATG 64

[Close]

BLAST of CmoCh15G002150 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-12
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 3  SQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKDNTG 62
          SQ MS++ GEAKGQA+EK SN++EKASD AQS KE++QE GQQM AKAQGA +A+KD TG
Sbjct: 5  SQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVKDATG 64

[Close]

BLAST of CmoCh15G002150 vs. TrEMBL
Match: A0A0A0KXN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-12
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 3  SQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKD 60
          SQKMS+ AGEAKGQ +EK SN+++KASD AQS KE+VQE GQQMMAKAQGA +A+KD
Sbjct: 5  SQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVKD 61

[Close]

BLAST of CmoCh15G002150 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 73.2 bits (178), Expect = 8.5e-14
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1


Query: 3  SQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKDNTG 62
          SQ MSF AG+AKGQ +EK SNLI+KAS+ AQS KE++QE GQQ+  KAQGA E IK+ TG
Sbjct: 5  SQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKEKTG 64

[Close]

BLAST of CmoCh15G002150 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-11
Identity = 34/60 (56.67%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 3  SQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKDNTG 62
          SQ +SF+AG+AKGQ +EK S +++KAS+ AQS KE+++E GQQ+  KAQGA E++K+ TG
Sbjct: 5  SQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNATG 64

[Close]

BLAST of CmoCh15G002150 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-09
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 4  QKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKDNTG 63
          Q  S++AG+A GQ KEK   +++KA D A S ++++Q+ GQQM  KAQGA + +KD TG
Sbjct: 5  QNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDKTG 63

[Close]

BLAST of CmoCh15G002150 vs. NCBI nr
Match: gi|659119050|ref|XP_008459448.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-14
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 3  SQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKDNTG 62
          SQKMS++AGEAKGQA+EK SNL++KAS+ AQS KET+QEAGQQMMAKAQGA +AIKD TG
Sbjct: 5  SQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIKDATG 64

[Close]

BLAST of CmoCh15G002150 vs. NCBI nr
Match: gi|1021507029|ref|XP_016196828.1| (PREDICTED: stress-induced protein KIN2-like [Arachis ipaensis])

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-13
Identity = 44/62 (70.97%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 1  MESQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKDN 60
          M+S+K+SF+AGEAKGQA+EK SNL++ AS+ AQSTKET+Q+AGQQMMA AQGA EA+K+ 
Sbjct: 1  MDSEKLSFQAGEAKGQAQEKASNLVDMASNAAQSTKETMQQAGQQMMATAQGAAEAVKNA 60

Query: 61 TG 63
          TG
Sbjct: 61 TG 62

[Close]

BLAST of CmoCh15G002150 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-13
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1


Query: 3  SQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKDNTG 62
          SQKMS+  GEAKGQA+EK SN+++KASDTAQS KE++QEAGQQM AKAQGA +A+KD TG
Sbjct: 5  SQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVKDATG 64

[Close]

BLAST of CmoCh15G002150 vs. NCBI nr
Match: gi|449447460|ref|XP_004141486.1| (PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 6.8e-13
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1


Query: 3  SQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKDNTG 62
          SQKMS++AGEAKGQ +EK SNL++ A++ AQS KET+QEAGQQ+MAKAQGA EAIKD TG
Sbjct: 5  SQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIKDATG 64

[Close]

BLAST of CmoCh15G002150 vs. NCBI nr
Match: gi|659119052|ref|XP_008459449.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 3  SQKMSFEAGEAKGQAKEKTSNLIEKASDTAQSTKETVQEAGQQMMAKAQGAVEAIKD 60
          SQKMS+ AGEAKGQ +EK SN+++KAS+ AQSTKE+VQEAGQQMMAKAQGA +A+KD
Sbjct: 4  SQKMSYHAGEAKGQTQEKVSNMMDKASNAAQSTKESVQEAGQQMMAKAQGATDAVKD 60

The following BLAST results are available for this feature:

BLAST of CmoCh15G002150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G002150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVV6_CUCSA	4.7e-13	73.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1	[more]
A0A0A0KRE1_CUCSA	1.4e-12	71.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1	[more]
W9RDZ1_9ROSA	1.8e-12	71.67	Uncharacterized protein OS=Morus notabilis GN=L484_009672 PE=4 SV=1	[more]
A0A0A0KPD4_CUCSA	2.4e-12	70.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]
A0A0A0KXN2_CUCSA	4.0e-12	73.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1	[more]

BLAST of CmoCh15G002150 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53820.1	8.5e-14	66.67	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G38760.1	2.3e-11	56.67	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	3.7e-09	49.15	Late embryogenesis abundant protein (LEA) family protein	[more]

BLAST of CmoCh15G002150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119050\|ref\|XP_008459448.1\|	2.1e-14	78.33	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|1021507029\|ref\|XP_016196828.1\|	3.1e-13	70.97	PREDICTED: stress-induced protein KIN2-like [Arachis ipaensis]	[more]
gi\|659073373\|ref\|XP_008437025.1\|	4.0e-13	73.33	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|449447460\|ref\|XP_004141486.1\|	6.8e-13	73.33	PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus]	[more]
gi\|659119052\|ref\|XP_008459449.1\|	1.5e-12	75.44	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G002150.1	CmoCh15G002150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 25..45 scor
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 1..80 score: 1.2
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 1..80 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G002150	Cla016482	Watermelon (97103) v1	cmowmB275
CmoCh15G002150	Lsi03G002040	Bottle gourd (USVL1VR-Ls)	cmolsiB265
CmoCh15G002150	Cp4.1LG01g22210	Cucurbita pepo (Zucchini)	cmocpeB279
CmoCh15G002150	MELO3C022078.2	Melon (DHL92) v3.6.1	cmomedB280
CmoCh15G002150	CsaV3_5G038860	Cucumber (Chinese Long) v3	cmocucB0348
CmoCh15G002150	Cla97C11G211980	Watermelon (97103) v2	cmowmbB278
CmoCh15G002150	Bhi06G000222	Wax gourd	cmowgoB0374
CmoCh15G002150	Bhi06G000050	Wax gourd	cmowgoB0377

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G002150	CmoCh04G029610	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G002150	Wax gourd	cmowgoB0398
CmoCh15G002150	Cucumber (Gy14) v1	cgycmoB0660
CmoCh15G002150	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G002150	Cucurbita maxima (Rimu)	cmacmoB692
CmoCh15G002150	Wild cucumber (PI 183967)	cmocpiB296
CmoCh15G002150	Cucumber (Chinese Long) v2	cmocuB287
CmoCh15G002150	Melon (DHL92) v3.5.1	cmomeB239
CmoCh15G002150	Melon (DHL92) v3.5.1	cmomeB248
CmoCh15G002150	Melon (DHL92) v3.5.1	cmomeB253
CmoCh15G002150	Watermelon (Charleston Gray)	cmowcgB240
CmoCh15G002150	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G002150	Bottle gourd (USVL1VR-Ls)	cmolsiB270
CmoCh15G002150	Cucumber (Gy14) v2	cgybcmoB584
CmoCh15G002150	Melon (DHL92) v3.6.1	cmomedB271
CmoCh15G002150	Melon (DHL92) v3.6.1	cmomedB287
CmoCh15G002150	Silver-seed gourd	carcmoB0031
CmoCh15G002150	Silver-seed gourd	carcmoB0362
CmoCh15G002150	Cucumber (Chinese Long) v3	cmocucB0354
CmoCh15G002150	Watermelon (97103) v2	cmowmbB288