CsGy5G029170 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G029170
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Late embryogenesis abundant protein (LEA) family protein
Location	Chr5 : 32599419 .. 32600093 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGCAGCTTGAGGTCTTAATGAATCAAACAACTTTAGAAGAATCATATATTCACAAATTGATCTAATTCCTTATTCTAAACTTTCTCTTTCACAATGGCAGACAATAACTCTAACAAGATGAGCTTTCAAGCTGGAGAAGCCAAGGGCCAAGCTCAGGTTTTCGTCTATTCTATATCTTTTTTTATTTTTAAAACATTTATTAAAAGTATAATGAGTATGATGTTGGTGGGTTGTATTGTTAATTATATAGGAGAAGGCTAGCAATTTGATGGATAAGGCGAGTAATGCAGCGGAATCGGCTAAAGAGTCCATTCAAGAGACAGGCCAACAGATGATGGCTAAGGCTCAAGGTGCTGCTGATGCTGCCAAAGATGCTGTCAACAAATAAAACCATATATCAATCATCCTTATTATTGATATTTGATCAATTAATTATGAGTTTTACTTTTCGAGTTTGGGATTTGTTTGGTTACTCCTTTTCTTAGGGGGGTTTTTCAAAGATGTCAAATAAATTCCTATTGGAATTTCTTTTCATTTTCAACTTTCATTTATACATGAATATATTTTCTTAGATCATATTCAAAGTAATTGTTGCTAAATAATGATTATAGATTTAATTATGTCTATCTAAATCCAAGATCATAGTGCCATTTTTTTTTAAAGAAATATTATC

mRNA sequence

CAAGCAGCTTGAGGTCTTAATGAATCAAACAACTTTAGAAGAATCATATATTCACAAATTGATCTAATTCCTTATTCTAAACTTTCTCTTTCACAATGGCAGACAATAACTCTAACAAGATGAGCTTTCAAGCTGGAGAAGCCAAGGGCCAAGCTCAGGAGAAGGCTAGCAATTTGATGGATAAGGCGAGTAATGCAGCGGAATCGGCTAAAGAGTCCATTCAAGAGACAGGCCAACAGATGATGGCTAAGGCTCAAGGTGCTGCTGATGCTGCCAAAGATGCTGTCAACAAATAAAACCATATATCAATCATCCTTATTATTGATATTTGATCAATTAATTATGAGTTTTACTTTTCGAGTTTGGGATTTGTTTGGTTACTCCTTTTCTTAGGGGGGTTTTTCAAAGATGTCAAATAAATTCCTATTGGAATTTCTTTTCATTTTCAACTTTCATTTATACATGAATATATTTTCTTAGATCATATTCAAAGTAATTGTTGCTAAATAATGATTATAGATTTAATTATGTCTATCTAAATCCAAGATCATAGTGCCATTTTTTTTTAAAGAAATATTATC

Coding sequence (CDS)

ATGGCAGACAATAACTCTAACAAGATGAGCTTTCAAGCTGGAGAAGCCAAGGGCCAAGCTCAGGAGAAGGCTAGCAATTTGATGGATAAGGCGAGTAATGCAGCGGAATCGGCTAAAGAGTCCATTCAAGAGACAGGCCAACAGATGATGGCTAAGGCTCAAGGTGCTGCTGATGCTGCCAAAGATGCTGTCAACAAATAA

Protein sequence

MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKDAVNK

Homology

The following BLAST results are available for this feature:

BLAST of CsGy5G029170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy5G029170 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G029170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G029170 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G029170.1	CsGy5G029170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 21..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	PANTHER	PTHR34191:SF5	ABA-INDUCIBLE PROTEIN-LIKE-RELATED	coord: 1..64
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 1..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G029170	Csa5G643240	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G029170	MELO3C022080	Melon (DHL92) v3.5.1	cgybmeB297
CsGy5G029170	CSPI05G29740	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G029170	CmaCh15G002020	Cucurbita maxima (Rimu)	cgybcmaB609
CsGy5G029170	CmoCh04G029610	Cucurbita moschata (Rifu)	cgybcmoB625
CsGy5G029170	Lsi03G002040	Bottle gourd (USVL1VR-Ls)	cgyblsiB325
CsGy5G029170	Cp4.1LG01g22210	Cucurbita pepo (Zucchini)	cgybcpeB625
CsGy5G029170	CsaV3_5G038860	Cucumber (Chinese Long) v3	cgybcucB232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G029170	Cucurbita maxima (Rimu)	cgybcmaB647
CsGy5G029170	Cucurbita moschata (Rifu)	cgybcmoB584
CsGy5G029170	Cucurbita pepo (Zucchini)	cgybcpeB587
CsGy5G029170	Cucurbita pepo (Zucchini)	cgybcpeB598
CsGy5G029170	Melon (DHL92) v3.5.1	cgybmeB299
CsGy5G029170	Melon (DHL92) v3.5.1	cgybmeB322
CsGy5G029170	Melon (DHL92) v3.6.1	cgybmedB297
CsGy5G029170	Melon (DHL92) v3.6.1	cgybmedB299
CsGy5G029170	Melon (DHL92) v3.6.1	cgybmedB327
CsGy5G029170	Watermelon (Charleston Gray)	cgybwcgB328
CsGy5G029170	Watermelon (Charleston Gray)	cgybwcgB363
CsGy5G029170	Watermelon (97103) v1	cgybwmB409
CsGy5G029170	Silver-seed gourd	carcgybB0021
CsGy5G029170	Silver-seed gourd	carcgybB0280
CsGy5G029170	Cucumber (Chinese Long) v3	cgybcucB237
CsGy5G029170	Watermelon (97103) v2	cgybwmbB341
CsGy5G029170	Wax gourd	cgybwgoB447
CsGy5G029170	Wax gourd	cgybwgoB499