Cla016475 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016475
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pollen coat protein (AHRD V1 ***- Q39385_BRAOL)
Location	Chr11 : 21731018 .. 21731497 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAACTCTCAAAAGATGAGCTACCACGCTGGAGAAGCCAAGGGTCAAGCTCAGGTTCACACCTACCCATCATCATTTATTGATTGCATGTTTAATTATTGTATTTTTAATATACATTATGGTAATTGAATATAAAATGAATTTGGTAATAATTGCCAAATATAATAATTTAATTCCCAATATTTGTGTTATCTTTTAATGCCATTTTTTATTCTTTTATTTCATGGATTTTATATTGCTTTATTGGTTGTCATCAGAAAATGCCTTATATTTGGTTTATGTTGGTGTGATTATAAAAGGGTGATAGAGTAACATGTTAATTAGTTTGTCTTTATTTAGGAGAAGGTGAGCAATATGATGGACAAGGCAAGTGATGTAGCCCAATCAGCTAAGGAATCCGTGCAAGAAGCAGGACAACAGGTGAAAGCTAAGGCACAAGGAGCTGCCGATGCTGTCAAAGATGCAATTAACAAATGA

mRNA sequence

ATGGATAACTCTCAAAAGATGAGCTACCACGCTGGAGAAGCCAAGGGTCAAGCTCAGGAGAAGGTGAGCAATATGATGGACAAGGCAAGTGATGTAGCCCAATCAGCTAAGGAATCCGTGCAAGAAGCAGGACAACAGGTGAAAGCTAAGGCACAAGGAGCTGCCGATGCTGTCAAAGATGCAATTAACAAATGA

Coding sequence (CDS)

ATGGATAACTCTCAAAAGATGAGCTACCACGCTGGAGAAGCCAAGGGTCAAGCTCAGGAGAAGGTGAGCAATATGATGGACAAGGCAAGTGATGTAGCCCAATCAGCTAAGGAATCCGTGCAAGAAGCAGGACAACAGGTGAAAGCTAAGGCACAAGGAGCTGCCGATGCTGTCAAAGATGCAATTAACAAATGA

Protein sequence

MDNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKDAINK

Homology

[Close]

BLAST of Cla016475 vs. Swiss-Prot
Match: LEA2_CICAR (Late embryogenesis abundant protein 2 OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-06
Identity = 26/57 (45.61%), Postives = 31/57 (54.39%), Query Frame = 1


Query: 4  SQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKD 61
          S   SY AGEAKG+ +EK + M+    D AQ+AKE  Q+A Q  K K    A A K+
Sbjct: 3  SHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKE 59

HSP 2 Score: 47.4 bits (111), Expect = 7.0e-05
Identity = 26/68 (38.24%), Postives = 33/68 (48.53%), Query Frame = 1


Query: 4  SQKMSYHAGEAKGQAQEKVSNMM-----------DKASDVAQSAKESVQEAGQQVKAKAQ 61
          S   SY AGEAKG+ +EK + M+           +KA   AQ+AK+   +  Q  K K Q
Sbjct: 3  SHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQ 62

HSP 3 Score: 44.3 bits (103), Expect = 5.9e-04
Identity = 27/79 (34.18%), Postives = 33/79 (41.77%), Query Frame = 1


Query: 4  SQKMSYHAGEAKGQAQEKVSNMM----------------------DKASDVAQSAKESVQ 61
          S   SY AGEAKG+ +EK + M+                      DK S  AQ+AKE  Q
Sbjct: 3  SHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQ 62

HSP 4 Score: 41.6 bits (96), Expect = 3.8e-03
Identity = 23/60 (38.33%), Postives = 32/60 (53.33%), Query Frame = 1


Query: 4   SQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKES----VQEAGQQVKAKAQGAADAVK 60
           +Q     A +  G+A+EK S M     + AQS K++    +Q+ G++ K  AQGA DAVK
Sbjct: 76  TQATKEKAQDTTGRAKEKGSEMGQSTKETAQSGKDNSAGFLQQTGEKAKGMAQGATDAVK 135

HSP 5 Score: 35.0 bits (79), Expect = 3.6e-01
Identity = 27/90 (30.00%), Postives = 33/90 (36.67%), Query Frame = 1


Query: 4  SQKMSYHAGEAKGQAQEKVSNMM----------------------DKASDVAQSAKESVQ 61
          S   SY AGEAKG+ +EK + M+                      DK S  AQ+AKE  Q
Sbjct: 3  SHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQ 62

[Close]

BLAST of Cla016475 vs. Swiss-Prot
Match: KIN2_ARATH (Stress-induced protein KIN2 OS=Arabidopsis thaliana GN=KIN2 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.8e-06
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKD 60
          M  + K ++ AG+A G+A+EK + ++DKA D A +A  S Q+AG+ +   A G  + VKD
Sbjct: 1  MSETNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKD 60

[Close]

BLAST of Cla016475 vs. TrEMBL
Match: A0A0A0KXN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-22
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKDA 61
          DNSQKMSYHAGEAKGQ QEK+SNMMDKASD AQSAKESVQE GQQ+ AKAQGAADAVKDA
Sbjct: 3  DNSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVKDA 62

Query: 62 INK 65
          +NK
Sbjct: 63 VNK 65

[Close]

BLAST of Cla016475 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-20
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKDA 61
          DNS+KMSYH GEAKGQAQEK SN+MDKA D AQSAKES+QEAGQQ+KAKAQGAADAVKDA
Sbjct: 3  DNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVKDA 62

[Close]

BLAST of Cla016475 vs. TrEMBL
Match: B9T3S3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0447160 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-19
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKDA 61
          DNSQKM+YHAGEAKGQ QEK SNMMDKA +VAQSAKES+QEAG Q+KAKAQGAADAVK+A
Sbjct: 3  DNSQKMAYHAGEAKGQTQEKASNMMDKAGNVAQSAKESMQEAGNQMKAKAQGAADAVKNA 62

[Close]

BLAST of Cla016475 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-19
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 1


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKDA 61
          DNSQ MSY  GEAKGQAQEK SNMM+KASD AQSAKES+QE GQQ+KAKAQGAADAVKDA
Sbjct: 3  DNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVKDA 62

[Close]

BLAST of Cla016475 vs. TrEMBL
Match: A0A0A0KSI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643240 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-18
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKDA 61
          +NS KMS+ AGEAKGQAQEK SN+MDKAS+ A+SAKES+QE GQQ+ AKAQGAADA KDA
Sbjct: 4  NNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKDA 63

Query: 62 INK 65
          +NK
Sbjct: 64 VNK 66

[Close]

BLAST of Cla016475 vs. NCBI nr
Match: gi|449447458|ref|XP_004141485.1| (PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-22
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKDA 61
          DNSQKMSYHAGEAKGQ QEK+SNMMDKASD AQSAKESVQE GQQ+ AKAQGAADAVKDA
Sbjct: 3  DNSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVKDA 62

Query: 62 INK 65
          +NK
Sbjct: 63 VNK 65

[Close]

BLAST of Cla016475 vs. NCBI nr
Match: gi|659119052|ref|XP_008459449.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-22
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKD 60
          MDNSQKMSYHAGEAKGQ QEKVSNMMDKAS+ AQS KESVQEAGQQ+ AKAQGA DAVKD
Sbjct: 1  MDNSQKMSYHAGEAKGQTQEKVSNMMDKASNAAQSTKESVQEAGQQMMAKAQGATDAVKD 60

Query: 61 AINK 65
          A+NK
Sbjct: 61 AVNK 64

[Close]

BLAST of Cla016475 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-21
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKDA 61
          DNSQKMSYH GEAKGQAQEK SNMMDKASD AQSAKES+QEAGQQ+KAKAQGAADAVKDA
Sbjct: 3  DNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVKDA 62

[Close]

BLAST of Cla016475 vs. NCBI nr
Match: gi|1009127017|ref|XP_015880470.1| (PREDICTED: stress-induced protein KIN2-like [Ziziphus jujuba])

HSP 1 Score: 107.8 bits (268), Expect = 6.9e-21
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKDA 61
          DNSQKMSYHAGEAKG+AQEK  NMMDKAS+ AQSAKESVQEAGQQ+KAKAQGAADAVKDA
Sbjct: 3  DNSQKMSYHAGEAKGRAQEKAGNMMDKASNAAQSAKESVQEAGQQMKAKAQGAADAVKDA 62

[Close]

BLAST of Cla016475 vs. NCBI nr
Match: gi|659119054|ref|XP_008459450.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-20
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKASDVAQSAKESVQEAGQQVKAKAQGAADAVKDA 61
          DNSQKMSY+AGEAKGQ QEKVSNMMDKAS+ A+SAKES QE GQQ+ AKA+GAADAVKDA
Sbjct: 3  DNSQKMSYNAGEAKGQTQEKVSNMMDKASNAAESAKESAQETGQQIMAKAEGAADAVKDA 62

Query: 62 INK 65
          +NK
Sbjct: 63 VNK 65

The following BLAST results are available for this feature:

BLAST of Cla016475 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LEA2_CICAR	1.3e-06	45.61	Late embryogenesis abundant protein 2 OS=Cicer arietinum PE=2 SV=1	[more]
KIN2_ARATH	4.8e-06	40.00	Stress-induced protein KIN2 OS=Arabidopsis thaliana GN=KIN2 PE=2 SV=1	[more]

BLAST of Cla016475 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXN2_CUCSA	1.1e-22	88.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1	[more]
A0A0A0KRE1_CUCSA	1.8e-20	86.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1	[more]
B9T3S3_RICCO	1.2e-19	85.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0447160 PE=4 SV=1	[more]
A0A0A0KPD4_CUCSA	2.0e-19	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]
A0A0A0KSI8_CUCSA	1.3e-18	76.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643240 PE=4 SV=1	[more]

BLAST of Cla016475 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447458\|ref\|XP_004141485.1\|	1.6e-22	88.89	PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus]	[more]
gi\|659119052\|ref\|XP_008459449.1\|	2.2e-22	87.50	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|659073373\|ref\|XP_008437025.1\|	1.4e-21	91.67	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|1009127017\|ref\|XP_015880470.1\|	6.9e-21	90.00	PREDICTED: stress-induced protein KIN2-like [Ziziphus jujuba]	[more]
gi\|659119054\|ref\|XP_008459450.1\|	1.5e-20	82.54	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0050821	protein stabilization
biological_process	GO:0050826	response to freezing
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016475	Cla016475.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 1..61 score: 6.2
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 1..61 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016475	MELO3C022080	Melon (DHL92) v3.5.1	mewmB038
Cla016475	CmoCh04G029610	Cucurbita moschata (Rifu)	cmowmB730
Cla016475	MELO3C022081.2	Melon (DHL92) v3.6.1	medwmB037
Cla016475	Bhi06G000222	Wax gourd	wgowmB140
Cla016475	Bhi06G000049	Wax gourd	wgowmB146

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016475	Silver-seed gourd	carwmB0025
Cla016475	Silver-seed gourd	carwmB0260
Cla016475	Cucumber (Chinese Long) v3	cucwmB462
Cla016475	Watermelon (97103) v2	wmwmbB361
Cla016475	Watermelon (97103) v2	wmwmbB373
Cla016475	Cucumber (Gy14) v1	cgywmB447
Cla016475	Cucurbita maxima (Rimu)	cmawmB284
Cla016475	Cucurbita maxima (Rimu)	cmawmB736
Cla016475	Cucurbita moschata (Rifu)	cmowmB275
Cla016475	Wild cucumber (PI 183967)	cpiwmB450
Cla016475	Wild cucumber (PI 183967)	cpiwmB453
Cla016475	Melon (DHL92) v3.5.1	mewmB039
Cla016475	Melon (DHL92) v3.5.1	mewmB076
Cla016475	Watermelon (Charleston Gray)	wcgwmB107
Cla016475	Cucumber (Chinese Long) v2	cuwmB439
Cla016475	Cucumber (Chinese Long) v2	cuwmB437
Cla016475	Cucurbita pepo (Zucchini)	cpewmB195
Cla016475	Cucurbita pepo (Zucchini)	cpewmB462
Cla016475	Bottle gourd (USVL1VR-Ls)	lsiwmB278
Cla016475	Cucumber (Gy14) v2	cgybwmB409
Cla016475	Melon (DHL92) v3.6.1	medwmB038
Cla016475	Melon (DHL92) v3.6.1	medwmB073