Bhi06G000049 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G000049
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	stress-induced protein KIN2-like
Location	chr6 : 1205907 .. 1206725 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAACCATTTTCACCGAGTCTTTAATTAACCCTCAAGTTCTAAGCTCCTAATTTCTGTGTTTTTAAAATTCATTATAAAAAATAATGGATAACTCTCAAAAAATGAAATATCATGCTGGAGAAGCCAAGGGTCAAACTCAGGTTTTTAAATTTAACCATCTTACTCTTTTATCAATTCATATTACATTATTATATTTTTAATATTTTATGGTAAAATTGATTATAAAATGATTTGGTATCAATTGTTTAATATAATAATTTTTTCCTCAATGGGTTTGTGTGTGTTATTTGTTAATATCACTTTTTATTCTTTTATTTCATGGATTCTATATTGCTTTTATTAGTTGTGTTGAAGCATTTCCATGCCTAGCTTGTACGATTAAGGAGTGATAGAGTAACATATTAGTTTGTGTTGTTATGCAGGAGAAGGTGAGCAATATGATGGACAAGGCAGCTGATGCAGCTCAATCAGCTAAAGAATCAATGCAAGAAGCAGGGCAACAGGTGAAGGCCAAAGTACAAGGAGCTGCTGATGTTGTCAAGGATGCAATTAACAAATGAAAACGTCATCTATTTGTACTCTTTTTTAATTTTTGAAGGTTTCAATTTTGTTCTTACTTAGACTTATTCTCTTTCCTTTTGTTGAATAAAGCCATTATTATGTAAGAGCCTTGAAAAAAAGTCACATATGGCTCATAAGCCTTTTCTGTCAATAAGAATTATGGCTAGTTGACATGGGTCAAAACCTAGTTTGTTTTTGTAGTCTGATTACAGATTATAATTATGGCACAAAAATATAAAGAAAATTAAGCAAAAA

mRNA sequence

CTAAAACCATTTTCACCGAGTCTTTAATTAACCCTCAAGTTCTAAGCTCCTAATTTCTGTGTTTTTAAAATTCATTATAAAAAATAATGGATAACTCTCAAAAAATGAAATATCATGCTGGAGAAGCCAAGGGTCAAACTCAGGAGAAGGTGAGCAATATGATGGACAAGGCAGCTGATGCAGCTCAATCAGCTAAAGAATCAATGCAAGAAGCAGGGCAACAGGTGAAGGCCAAAGTACAAGGAGCTGCTGATGTTGTCAAGGATGCAATTAACAAATGAAAACGTCATCTATTTGTACTCTTTTTTAATTTTTGAAGGTTTCAATTTTGTTCTTACTTAGACTTATTCTCTTTCCTTTTGTTGAATAAAGCCATTATTATGTAAGAGCCTTGAAAAAAAGTCACATATGGCTCATAAGCCTTTTCTGTCAATAAGAATTATGGCTAGTTGACATGGGTCAAAACCTAGTTTGTTTTTGTAGTCTGATTACAGATTATAATTATGGCACAAAAATATAAAGAAAATTAAGCAAAAA

Coding sequence (CDS)

ATGGATAACTCTCAAAAAATGAAATATCATGCTGGAGAAGCCAAGGGTCAAACTCAGGAGAAGGTGAGCAATATGATGGACAAGGCAGCTGATGCAGCTCAATCAGCTAAAGAATCAATGCAAGAAGCAGGGCAACAGGTGAAGGCCAAAGTACAAGGAGCTGCTGATGTTGTCAAGGATGCAATTAACAAATGA

Protein sequence

MDNSQKMKYHAGEAKGQTQEKVSNMMDKAADAAQSAKESMQEAGQQVKAKVQGAADVVKDAINK

Homology

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BLAST of Bhi06G000049 vs. TrEMBL
Match: tr|A0A1S3CA67|A0A1S3CA67_CUCME (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498580 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.9e-04
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  MDNSQKMKYHAGEAKGQTQEKVSNM 26
          MDNSQKM YHAGEAKGQTQEKVSNM
Sbjct: 1  MDNSQKMSYHAGEAKGQTQEKVSNM 25

The following BLAST results are available for this feature:

BLAST of Bhi06G000049 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi06G000049 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi06G000049 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CA67\|A0A1S3CA67_CUCME	9.9e-04	96.00	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498580 PE=4 SV...	[more]

BLAST of Bhi06G000049 vs. NCBI nr


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009830	cell wall modification involved in abscission
biological_process	GO:0008150	biological_process
biological_process	GO:0050821	protein stabilization
biological_process	GO:0050826	response to freezing
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000049	Bhi06M000049	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..46
None	No IPR available	GENE3D	G3DSA:1.20.120.20		coord: 2..64 e-value: 3.2E-5 score: 25.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..64
None	No IPR available	PANTHER	PTHR34191:SF4	SUBFAMILY NOT NAMED	coord: 1..63
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 1..63

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi06G000049	Csa5G643250	Cucumber (Chinese Long) v2	cuwgoB461
Bhi06G000049	MELO3C022080	Melon (DHL92) v3.5.1	mewgoB025
Bhi06G000049	CSPI05G29750	Wild cucumber (PI 183967)	cpiwgoB465
Bhi06G000049	Cucsa.238350	Cucumber (Gy14) v1	cgywgoB471
Bhi06G000049	CmaCh15G002020	Cucurbita maxima (Rimu)	cmawgoB0384
Bhi06G000049	Lsi03G002050	Bottle gourd (USVL1VR-Ls)	lsiwgoB310
Bhi06G000049	CsGy5G029180	Cucumber (Gy14) v2	cgybwgoB439
Bhi06G000049	MELO3C033537.2	Melon (DHL92) v3.6.1	medwgoB023
Bhi06G000049	CsaV3_5G038870	Cucumber (Chinese Long) v3	cucwgoB474
Bhi06G000049	Cla016475	Watermelon (97103) v1	wgowmB146
Bhi06G000049	Cla97C11G211940	Watermelon (97103) v2	wgowmbB118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G000049	Melon (DHL92) v3.6.1	medwgoB027
Bhi06G000049	Melon (DHL92) v3.5.1	mewgoB029