Lsi03G002050 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G002050
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionLate embryogenesis abundant protein (LEA) family protein
Locationchr03 : 2664140 .. 2664704 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAACTCTCAAAAGATGAGCTACCATGCCGGAGAAGCCAAGGGTCAAACTCAGGTTTACACTATCGCTATGTATTTAGTAACATAATTGCAATCTAATGTTGCCAGTTAGACGTACATCTTTATTGTCATACTAAGGAATCAATCAGCTAAGGAGAATATCTAATTTGGTGTATTTTGTTAATTTGTGACCTTATGCAGGAGAAAGTGAGCAATATGATGGACAAGGCAAGTGATGTAGCTCAATCAGCTAAGGAATCAGTGCAGGAAGCAGGACAACAGATGAAAGCCAAAGCACAAGGAGCAGCTGATGCTGTCAAGGATGCAATTAATAAATGAAGCTATCCCTATTCGCTCATTTTTGTTTTTGGTTAGACTTTTTTTTCTTTCCTCTCTCCCAAATAAAGCTTGTATTGTGTAAGAGCCTCGAAAAAAAAGAGCTCTCATATGGCTCATGAGCCTTTTCTCCCCCATAAGAGTTATGGCTAGTTGACATTGGGCCAACTTGTTTTATTTTTTCTTCGACACTAATTTAAAAATTGAACAAATTGATATAAGTGAGC

mRNA sequence

ATGGATAACTCTCAAAAGATGAGCTACCATGCCGGAGAAGCCAAGGGTCAAACTCAGGTTTACACTATCGCTATGTATTTAGAGAAAGTGAGCAATATGATGGACAAGGCAAGTGATGTAGCTCAATCAGCTAAGGAATCAGTGCAGGAAGCAGGACAACAGATGAAAGCCAAAGCACAAGGAGCAGCTGATGCTGTCAAGGATGCAATTAATAAATGAAGCTATCCCTATTCGCTCATTTTTGTTTTTGGTTAGACTTTTTTTTCTTTCCTCTCTCCCAAATAAAGCTTGTATTGTGTAAGAGCCTCGAAAAAAAAGAGCTCTCATATGGCTCATGAGCCTTTTCTCCCCCATAAGAGTTATGGCTAGTTGACATTGGGCCAACTTGTTTTATTTTTTCTTCGACACTAATTTAAAAATTGAACAAATTGATATAAGTGAGC

Coding sequence (CDS)

ATGGATAACTCTCAAAAGATGAGCTACCATGCCGGAGAAGCCAAGGGTCAAACTCAGGTTTACACTATCGCTATGTATTTAGAGAAAGTGAGCAATATGATGGACAAGGCAAGTGATGTAGCTCAATCAGCTAAGGAATCAGTGCAGGAAGCAGGACAACAGATGAAAGCCAAAGCACAAGGAGCAGCTGATGCTGTCAAGGATGCAATTAATAAATGA

Protein sequence

MDNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDAINK
Homology
[Close]
BLAST of Lsi03G002050 vs. TrEMBL
Match: A0A0A0KXN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-19
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 1 

Query: 2  DNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 61
          DNSQKMSYHAGEAKGQTQ        EK+SNMMDKASD AQSAKESVQE GQQM AKAQG
Sbjct: 3  DNSQKMSYHAGEAKGQTQ--------EKMSNMMDKASDAAQSAKESVQETGQQMMAKAQG 62

Query: 62 AADAVKDAINK 73
          AADAVKDA+NK
Sbjct: 63 AADAVKDAVNK 65

[Close]
BLAST of Lsi03G002050 vs. TrEMBL
Match: B9T3S3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0447160 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-16
Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 2  DNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 61
          DNSQKM+YHAGEAKGQTQ        EK SNMMDKA +VAQSAKES+QEAG QMKAKAQG
Sbjct: 3  DNSQKMAYHAGEAKGQTQ--------EKASNMMDKAGNVAQSAKESMQEAGNQMKAKAQG 62

Query: 62 AADAVKDA 70
          AADAVK+A
Sbjct: 63 AADAVKNA 62

[Close]
BLAST of Lsi03G002050 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.9e-16
Identity = 52/68 (76.47%), Postives = 55/68 (80.88%), Query Frame = 1 

Query: 2  DNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 61
          DNS+KMSYH GEAKGQ Q        EK SN+MDKA D AQSAKES+QEAGQQMKAKAQG
Sbjct: 3  DNSEKMSYHIGEAKGQAQ--------EKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQG 62

Query: 62 AADAVKDA 70
          AADAVKDA
Sbjct: 63 AADAVKDA 62

[Close]
BLAST of Lsi03G002050 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.6e-15
Identity = 51/68 (75.00%), Postives = 53/68 (77.94%), Query Frame = 1 

Query: 2  DNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 61
          DNSQ MSY  GEAKGQ Q        EK SNMM+KASD AQSAKES+QE GQQMKAKAQG
Sbjct: 3  DNSQNMSYQIGEAKGQAQ--------EKASNMMEKASDAAQSAKESIQEGGQQMKAKAQG 62

Query: 62 AADAVKDA 70
          AADAVKDA
Sbjct: 63 AADAVKDA 62

[Close]
BLAST of Lsi03G002050 vs. TrEMBL
Match: K7MV53_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G278700 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.9e-14
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 1 

Query: 3  NSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGA 62
          +SQK SY+AG  KGQTQ        EK SNMMDKAS+ AQSAK+S+QE GQQ+KAKAQGA
Sbjct: 2  DSQKASYNAGVTKGQTQ--------EKASNMMDKASNTAQSAKDSMQETGQQLKAKAQGA 61

Query: 63 ADAVKDAINK 73
          ADAVKDA+NK
Sbjct: 62 ADAVKDAVNK 63

[Close]
BLAST of Lsi03G002050 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 73.2 bits (178), Expect = 7.5e-14
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 2  DNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 61
          +NSQ MS++AG+AKGQTQ        EK SN++DKAS+ AQSAKES+QE GQQ+K KAQG
Sbjct: 3  NNSQSMSFNAGQAKGQTQ--------EKASNLIDKASNAAQSAKESIQEGGQQLKQKAQG 61

Query: 62 AADAVKD 69
          A++ +K+
Sbjct: 63 ASETIKE 61

[Close]
BLAST of Lsi03G002050 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 70.1 bits (170), Expect = 6.4e-13
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 3  NSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGA 62
          NSQ +S+ AG+AKGQTQ        EK S MMDKAS+ AQSAKES++E GQQ+K KAQGA
Sbjct: 4  NSQNISFQAGQAKGQTQ--------EKASTMMDKASNAAQSAKESLKETGQQIKEKAQGA 62

Query: 63 ADAVKDA 70
           ++VK+A
Sbjct: 64 TESVKNA 62

[Close]
BLAST of Lsi03G002050 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-12
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 1 

Query: 1  MDNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQ 60
          MDN Q  SY AG+A GQT+        EK   MMDKA D A SA++S+Q+ GQQMK KAQ
Sbjct: 1  MDNKQNASYQAGQATGQTK--------EKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQ 60

Query: 61 GAADAVKD 69
          GAAD VKD
Sbjct: 61 GAADVVKD 60

[Close]
BLAST of Lsi03G002050 vs. NCBI nr
Match: gi|449447458|ref|XP_004141485.1| (PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 5.6e-19
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 1 

Query: 2  DNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 61
          DNSQKMSYHAGEAKGQTQ        EK+SNMMDKASD AQSAKESVQE GQQM AKAQG
Sbjct: 3  DNSQKMSYHAGEAKGQTQ--------EKMSNMMDKASDAAQSAKESVQETGQQMMAKAQG 62

Query: 62 AADAVKDAINK 73
          AADAVKDA+NK
Sbjct: 63 AADAVKDAVNK 65

[Close]
BLAST of Lsi03G002050 vs. NCBI nr
Match: gi|659119052|ref|XP_008459449.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 7.3e-19
Identity = 58/72 (80.56%), Postives = 60/72 (83.33%), Query Frame = 1 

Query: 1  MDNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQ 60
          MDNSQKMSYHAGEAKGQTQ        EKVSNMMDKAS+ AQS KESVQEAGQQM AKAQ
Sbjct: 1  MDNSQKMSYHAGEAKGQTQ--------EKVSNMMDKASNAAQSTKESVQEAGQQMMAKAQ 60

Query: 61 GAADAVKDAINK 73
          GA DAVKDA+NK
Sbjct: 61 GATDAVKDAVNK 64

[Close]
BLAST of Lsi03G002050 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-17
Identity = 55/68 (80.88%), Postives = 56/68 (82.35%), Query Frame = 1 

Query: 2  DNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 61
          DNSQKMSYH GEAKGQ Q        EK SNMMDKASD AQSAKES+QEAGQQMKAKAQG
Sbjct: 3  DNSQKMSYHVGEAKGQAQ--------EKASNMMDKASDTAQSAKESMQEAGQQMKAKAQG 62

Query: 62 AADAVKDA 70
          AADAVKDA
Sbjct: 63 AADAVKDA 62

[Close]
BLAST of Lsi03G002050 vs. NCBI nr
Match: gi|1009127017|ref|XP_015880470.1| (PREDICTED: stress-induced protein KIN2-like [Ziziphus jujuba])

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-16
Identity = 54/68 (79.41%), Postives = 56/68 (82.35%), Query Frame = 1 

Query: 2  DNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 61
          DNSQKMSYHAGEAKG+ Q        EK  NMMDKAS+ AQSAKESVQEAGQQMKAKAQG
Sbjct: 3  DNSQKMSYHAGEAKGRAQ--------EKAGNMMDKASNAAQSAKESVQEAGQQMKAKAQG 62

Query: 62 AADAVKDA 70
          AADAVKDA
Sbjct: 63 AADAVKDA 62

[Close]
BLAST of Lsi03G002050 vs. NCBI nr
Match: gi|659119054|ref|XP_008459450.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-16
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 1 

Query: 2  DNSQKMSYHAGEAKGQTQVYTIAMYLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 61
          DNSQKMSY+AGEAKGQTQ        EKVSNMMDKAS+ A+SAKES QE GQQ+ AKA+G
Sbjct: 3  DNSQKMSYNAGEAKGQTQ--------EKVSNMMDKASNAAESAKESAQETGQQIMAKAEG 62

Query: 62 AADAVKDAINK 73
          AADAVKDA+NK
Sbjct: 63 AADAVKDAVNK 65

The following BLAST results are available for this feature:
BLAST of Lsi03G002050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G002050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXN2_CUCSA3.9e-1981.69Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1[more]
B9T3S3_RICCO4.0e-1677.94Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0447160 PE=4 SV=1[more]
A0A0A0KRE1_CUCSA6.9e-1676.47Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1[more]
A0A0A0KPD4_CUCSA7.6e-1575.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1[more]
K7MV53_SOYBN4.9e-1470.00Uncharacterized protein OS=Glycine max GN=GLYMA_18G278700 PE=4 SV=1[more]
BLAST of Lsi03G002050 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G53820.17.5e-1459.70 Late embryogenesis abundant protein (LEA) family protein[more]
AT5G38760.16.4e-1361.19 Late embryogenesis abundant protein (LEA) family protein[more]
AT3G02480.11.4e-1258.82 Late embryogenesis abundant protein (LEA) family protein[more]
BLAST of Lsi03G002050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447458|ref|XP_004141485.1|5.6e-1981.69PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus][more]
gi|659119052|ref|XP_008459449.1|7.3e-1980.56PREDICTED: stress-induced protein KIN2-like [Cucumis melo][more]
gi|659073373|ref|XP_008437025.1|5.2e-1780.88PREDICTED: stress-induced protein KIN2-like [Cucumis melo][more]
gi|1009127017|ref|XP_015880470.1|2.6e-1679.41PREDICTED: stress-induced protein KIN2-like [Ziziphus jujuba][more]
gi|659119054|ref|XP_008459450.1|2.6e-1674.65PREDICTED: stress-induced protein KIN2-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009830 cell wall modification involved in abscission
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G002050.1Lsi03G002050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34191FAMILY NOT NAMEDcoord: 1..69
score: 3.2
NoneNo IPR availablePANTHERPTHR34191:SF2STRESS-INDUCED PROTEIN KIN1-RELATEDcoord: 1..69
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G002050Csa5G643250Cucumber (Chinese Long) v2culsiB353
Lsi03G002050CSPI05G29750Wild cucumber (PI 183967)cpilsiB357
Lsi03G002050Cucsa.238350Cucumber (Gy14) v1cgylsiB387
Lsi03G002050CmaCh15G002020Cucurbita maxima (Rimu)cmalsiB276
Lsi03G002050MELO3C022080Melon (DHL92) v3.5.1lsimeB233
Lsi03G002050MELO3C033537.2Melon (DHL92) v3.6.1lsimedB242
Lsi03G002050Cla97C11G211960Watermelon (97103) v2lsiwmbB222
Lsi03G002050Bhi06G000049Wax gourdlsiwgoB310
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G002050Watermelon (97103) v2lsiwmbB238
Lsi03G002050Wax gourdlsiwgoB312
Lsi03G002050Wax gourdlsiwgoB342
Lsi03G002050Cucumber (Gy14) v1cgylsiB464
Lsi03G002050Cucurbita maxima (Rimu)cmalsiB656
Lsi03G002050Cucurbita moschata (Rifu)cmolsiB265
Lsi03G002050Cucurbita moschata (Rifu)cmolsiB363
Lsi03G002050Cucurbita moschata (Rifu)cmolsiB645
Lsi03G002050Cucurbita pepo (Zucchini)cpelsiB143
Lsi03G002050Cucurbita pepo (Zucchini)cpelsiB339
Lsi03G002050Wild cucumber (PI 183967)cpilsiB362
Lsi03G002050Cucumber (Chinese Long) v2culsiB359
Lsi03G002050Melon (DHL92) v3.5.1lsimeB232
Lsi03G002050Melon (DHL92) v3.5.1lsimeB238
Lsi03G002050Watermelon (Charleston Gray)lsiwcgB245
Lsi03G002050Watermelon (Charleston Gray)lsiwcgB226
Lsi03G002050Watermelon (97103) v1lsiwmB258
Lsi03G002050Watermelon (97103) v1lsiwmB278
Lsi03G002050Cucumber (Gy14) v2cgyblsiB325
Lsi03G002050Melon (DHL92) v3.6.1lsimedB243
Lsi03G002050Melon (DHL92) v3.6.1lsimedB249
Lsi03G002050Silver-seed gourdcarlsiB017
Lsi03G002050Silver-seed gourdcarlsiB236
Lsi03G002050Cucumber (Chinese Long) v3cuclsiB378
Lsi03G002050Cucumber (Chinese Long) v3cuclsiB384