CmoCh04G025850 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G025850
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNucleolar protein 16, putative
LocationCmo_Chr04 : 18905902 .. 18906336 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGCAACTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTCCCACGCTCGGAAATGGCGTCATCGCTGGAATGCTTGCTTGGATTATGGCTATGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTCGTGACTACGCAACGAGTGAATACCTGTGTTGTGAATGCCCCCGAGCCGGAGAATGGCAACGACGAGATGTTCTTCAGCAGAGAGCAACGAGCTGCTGTGTGGGAGAAGAACATACTCATGGGTGGGAAGTGTCAGCTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGCTTCCTCTACTCACCTGGAAGTGA

mRNA sequence

ATGGCAAGGCAACTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTCCCACGCTCGGAAATGGCGTCATCGCTGGAATGCTTGCTTGGATTATGGCTATGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTCGTGACTACGCAACGAGTGAATACCTGTGTTGTGAATGCCCCCGAGCCGGAGAATGGCAACGACGAGATGTTCTTCAGCAGAGAGCAACGAGCTGCTGTGTGGGAGAAGAACATACTCATGGGTGGGAAGTGTCAGCTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGCTTCCTCTACTCACCTGGAAGTGA

Coding sequence (CDS)

ATGGCAAGGCAACTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTCCCACGCTCGGAAATGGCGTCATCGCTGGAATGCTTGCTTGGATTATGGCTATGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTCGTGACTACGCAACGAGTGAATACCTGTGTTGTGAATGCCCCCGAGCCGGAGAATGGCAACGACGAGATGTTCTTCAGCAGAGAGCAACGAGCTGCTGTGTGGGAGAAGAACATACTCATGGGTGGGAAGTGTCAGCTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGCTTCCTCTACTCACCTGGAAGTGA
BLAST of CmoCh04G025850 vs. TrEMBL
Match: A0A0A0K8P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.4e-63
Identity = 123/144 (85.42%), Postives = 129/144 (89.58%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPV 60
           MARQLQ++ HSSQ TAQVGMAG SLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPV
Sbjct: 1   MARQLQII-HSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           IELNQEATVVTTQRVNT      EPENGNDEMFFSREQ+A++W KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTQRVNTT-----EPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VILYD NGN VTPA+T  PLLTWK
Sbjct: 121 VILYDPNGNAVTPAKTPRPLLTWK 138

BLAST of CmoCh04G025850 vs. TrEMBL
Match: B9H7X5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-32
Identity = 80/144 (55.56%), Postives = 100/144 (69.44%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPV 60
           MARQL ++     +++ +G+   +LLLCAFALFMCASH+RKWR RW+AC  YG    DPV
Sbjct: 1   MARQL-LLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWR-RWSAC--YGPSDHDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           I+LN   T++ T       ++A       D+  FS EQ  +VW KNILMGGKCQLPDFSG
Sbjct: 61  IQLNTVDTMLGTGEHG---IHA----GSRDDSMFSGEQVVSVWRKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VI+YDS+GNVVTPA+   PLLTWK
Sbjct: 121 VIIYDSDGNVVTPAKNPRPLLTWK 133

BLAST of CmoCh04G025850 vs. TrEMBL
Match: B9SM70_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 79/147 (53.74%), Postives = 97/147 (65.99%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPV 60
           MARQL +      +T+Q G+A  +LLLCAF LFMCASH+RKWR R  +C  YG    +PV
Sbjct: 1   MARQLHLKQ-IPLSTSQAGLAATTLLLCAFVLFMCASHSRKWR-RLGSC--YGSSNHNPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQR---AAVWEKNILMGGKCQLPD 120
           IELN +  +++T        N       NDE+  S EQ+     VW+KNILMGGKCQLPD
Sbjct: 61  IELNTDNLILSTGVYGARSCN-------NDELLVSGEQQQQGVPVWQKNILMGGKCQLPD 120

Query: 121 FSGVILYDSNGNVVTPARTQLPLLTWK 145
           FSGVI+YDS+GN+V PAR   PLLTWK
Sbjct: 121 FSGVIIYDSDGNIVNPARNPHPLLTWK 136

BLAST of CmoCh04G025850 vs. TrEMBL
Match: U5GKQ4_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s06360g PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 74/126 (58.73%), Postives = 89/126 (70.63%), Query Frame = 1

Query: 19  GMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTC 78
           G+A  +LLLCAFALF+CASH+RKWR RW+AC  YG    DPVI+LN E T+  T      
Sbjct: 2   GLAAVTLLLCAFALFVCASHSRKWR-RWSAC--YGSFDHDPVIQLNTEDTMPGT---GVY 61

Query: 79  VVNAPEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQL 138
            ++A       D+  FS EQ A VW+KNIL GG+CQLPDFSGVI+YDS+GN VTPA+   
Sbjct: 62  GIHA----GSRDDSTFSGEQGAPVWKKNILTGGECQLPDFSGVIIYDSDGNAVTPAKNPR 117

Query: 139 PLLTWK 145
           PLLTWK
Sbjct: 122 PLLTWK 117

BLAST of CmoCh04G025850 vs. TrEMBL
Match: A0A067DCJ2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048595mg PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-30
Identity = 74/140 (52.86%), Postives = 93/140 (66.43%), Query Frame = 1

Query: 9   MHSSQ---ATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQ 68
           +H SQ    T+Q  +A  SLLLC FALF CASH+RK R RW AC ++    ++PVIELN 
Sbjct: 5   LHFSQPPPGTSQTALAAVSLLLCVFALFACASHSRKSR-RWRACYEFLELEDEPVIELNN 64

Query: 69  EATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRAA-VWEKNILMGGKCQLPDFSGVILY 128
           E  + +        +        +D+  FS EQ+   +W+KNI+MGGKCQLPDFSGVI+Y
Sbjct: 65  EVMLQSPTEFQEYQLR------DDDQSGFSGEQQGVPIWQKNIIMGGKCQLPDFSGVIIY 124

Query: 129 DSNGNVVTPARTQLPLLTWK 145
           DS GNVVTPA+ QLPLLTWK
Sbjct: 125 DSEGNVVTPAKPQLPLLTWK 137

BLAST of CmoCh04G025850 vs. TAIR10
Match: AT1G71740.1 (AT1G71740.1 unknown protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-23
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 1

Query: 17  QVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVN 76
           ++G+A AS+ L   A     SH+++   RW AC  YG    +PVI L  + T++    V 
Sbjct: 17  KMGLASASVRLVNLA-----SHSKRKLRRWAAC--YGSRDYEPVIYLQNDMTMMNNGGVY 76

Query: 77  TCVVNAPEPENGNDEMFFSREQRAA-VWEKNILMGGKCQLPDFSGVILYDSNGNVVTPAR 136
                     NG+  M  S +QR   +W+KNILMGGKCQLPDFSGVILYD++G VV PA+
Sbjct: 77  EY--------NGDPSMLLSGDQRRGPLWQKNILMGGKCQLPDFSGVILYDADGQVVPPAK 130

Query: 137 TQLPLLTWK 145
             LPLLTWK
Sbjct: 137 NSLPLLTWK 130

BLAST of CmoCh04G025850 vs. TAIR10
Match: AT1G49000.1 (AT1G49000.1 unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1

Query: 86  ENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGNVV------TPARTQLP 140
           +N  +E   + E+   +W++ ILMGGKC+  DFSGVI YDSNG ++      +P  T LP
Sbjct: 91  KNPPEEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLLNEVPPRSPRGTPLP 150

BLAST of CmoCh04G025850 vs. TAIR10
Match: AT3G18560.1 (AT3G18560.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 4.0e-06
Identity = 21/56 (37.50%), Postives = 31/56 (55.36%), Query Frame = 1

Query: 74  RVNTCVVNAPEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGN 130
           R N      P  +   + +    E+   VW++ ILMGGKC+  D+SGVI YD +G+
Sbjct: 105 RKNKAYDGGPTKKTAVEMVMEEDEEEYGVWQREILMGGKCEPLDYSGVIYYDCSGH 160

BLAST of CmoCh04G025850 vs. NCBI nr
Match: gi|778710681|ref|XP_011656615.1| (PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63
Identity = 123/144 (85.42%), Postives = 129/144 (89.58%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPV 60
           MARQLQ++ HSSQ TAQVGMAG SLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPV
Sbjct: 1   MARQLQII-HSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           IELNQEATVVTTQRVNT      EPENGNDEMFFSREQ+A++W KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTQRVNTT-----EPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VILYD NGN VTPA+T  PLLTWK
Sbjct: 121 VILYDPNGNAVTPAKTPRPLLTWK 138

BLAST of CmoCh04G025850 vs. NCBI nr
Match: gi|659113722|ref|XP_008456721.1| (PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 6.9e-61
Identity = 119/144 (82.64%), Postives = 127/144 (88.19%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPV 60
           MARQLQ++ HSSQ T QVGMAG SLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPV
Sbjct: 1   MARQLQII-HSSQGTTQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           IELNQEATVVTT +     VNA EPEN N+EMFFSREQ+A++W KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTGQ-----VNATEPENDNNEMFFSREQQASIWHKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VILYD NGNVVTPA+T  PLLTWK
Sbjct: 121 VILYDPNGNVVTPAKTPRPLLTWK 138

BLAST of CmoCh04G025850 vs. NCBI nr
Match: gi|224082514|ref|XP_002306724.1| (hypothetical protein POPTR_0005s22010g [Populus trichocarpa])

HSP 1 Score: 146.4 bits (368), Expect = 4.0e-32
Identity = 80/144 (55.56%), Postives = 100/144 (69.44%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPV 60
           MARQL ++     +++ +G+   +LLLCAFALFMCASH+RKWR RW+AC  YG    DPV
Sbjct: 1   MARQL-LLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWR-RWSAC--YGPSDHDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           I+LN   T++ T       ++A       D+  FS EQ  +VW KNILMGGKCQLPDFSG
Sbjct: 61  IQLNTVDTMLGTGEHG---IHA----GSRDDSMFSGEQVVSVWRKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VI+YDS+GNVVTPA+   PLLTWK
Sbjct: 121 VIIYDSDGNVVTPAKNPRPLLTWK 133

BLAST of CmoCh04G025850 vs. NCBI nr
Match: gi|743902975|ref|XP_011044834.1| (PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica])

HSP 1 Score: 146.0 bits (367), Expect = 5.2e-32
Identity = 80/144 (55.56%), Postives = 99/144 (68.75%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPV 60
           MARQL +      ++  +G+   +LLLCAFALFMCASH+RKWR RW+AC  YG    DPV
Sbjct: 1   MARQLHLKQIPLSSSG-LGLPAVTLLLCAFALFMCASHSRKWR-RWSAC--YGPSDHDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           I+LN E T++  +      ++A       D+  FS EQ  +VW KNILMGGKCQLPDFSG
Sbjct: 61  IQLNTEDTMLGIEHG----IHA----GSLDDSMFSGEQVVSVWRKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VI+YDS+GNVVTPA+   PLLTWK
Sbjct: 121 VIIYDSDGNVVTPAKNPRPLLTWK 132

BLAST of CmoCh04G025850 vs. NCBI nr
Match: gi|255572301|ref|XP_002527089.1| (PREDICTED: uncharacterized protein LOC8281390 [Ricinus communis])

HSP 1 Score: 141.0 bits (354), Expect = 1.7e-30
Identity = 79/147 (53.74%), Postives = 97/147 (65.99%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPV 60
           MARQL +      +T+Q G+A  +LLLCAF LFMCASH+RKWR R  +C  YG    +PV
Sbjct: 1   MARQLHLKQ-IPLSTSQAGLAATTLLLCAFVLFMCASHSRKWR-RLGSC--YGSSNHNPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQR---AAVWEKNILMGGKCQLPD 120
           IELN +  +++T        N       NDE+  S EQ+     VW+KNILMGGKCQLPD
Sbjct: 61  IELNTDNLILSTGVYGARSCN-------NDELLVSGEQQQQGVPVWQKNILMGGKCQLPD 120

Query: 121 FSGVILYDSNGNVVTPARTQLPLLTWK 145
           FSGVI+YDS+GN+V PAR   PLLTWK
Sbjct: 121 FSGVIIYDSDGNIVNPARNPHPLLTWK 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K8P1_CUCSA1.4e-6385.42Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1[more]
B9H7X5_POPTR2.8e-3255.56Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1[more]
B9SM70_RICCO1.2e-3053.74Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1[more]
U5GKQ4_POPTR1.2e-3058.73Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s06360g P... [more]
A0A067DCJ2_CITSI3.4e-3052.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048595mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G71740.11.6e-2346.51 unknown protein[more]
AT1G49000.13.2e-0843.33 unknown protein[more]
AT3G18560.14.0e-0637.50 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778710681|ref|XP_011656615.1|1.9e-6385.42PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus][more]
gi|659113722|ref|XP_008456721.1|6.9e-6182.64PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo][more]
gi|224082514|ref|XP_002306724.1|4.0e-3255.56hypothetical protein POPTR_0005s22010g [Populus trichocarpa][more]
gi|743902975|ref|XP_011044834.1|5.2e-3255.56PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica][more]
gi|255572301|ref|XP_002527089.1|1.7e-3053.74PREDICTED: uncharacterized protein LOC8281390 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G025850.1CmoCh04G025850.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33237FAMILY NOT NAMEDcoord: 12..73
score: 2.2E-32coord: 94..144
score: 2.2
NoneNo IPR availablePANTHERPTHR33237:SF4F14O23.12coord: 12..73
score: 2.2E-32coord: 94..144
score: 2.2

The following gene(s) are paralogous to this gene:

None