Cp4.1LG01g21370 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g21370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNucleolar protein 16, putative
LocationCp4.1LG01 : 18025924 .. 18026358 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGCAGCTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTCCCATGCTCGGAAATGGCGTCGTCGCTGGAATGCTTGCTTGGATTATGGCTACGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTTGTGACTACGCAACGAGTGAATACCTGTGTTGTGAATGCCACTGAGCCGGAGAATGGCAACGACGAGATGTTCTTCAGTAGAGAGCAACGAGCTGCTGTATGGGAGAAGAACATACTCATGGGAGGGAAGTGTCAGCTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGCTTCCTCTACTCACCTGGAAGTGA

mRNA sequence

ATGGCAAGGCAGCTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTCCCATGCTCGGAAATGGCGTCGTCGCTGGAATGCTTGCTTGGATTATGGCTACGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTTGTGACTACGCAACGAGTGAATACCTGTGTTGTGAATGCCACTGAGCCGGAGAATGGCAACGACGAGATGTTCTTCAGTAGAGAGCAACGAGCTGCTGTATGGGAGAAGAACATACTCATGGGAGGGAAGTGTCAGCTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGCTTCCTCTACTCACCTGGAAGTGA

Coding sequence (CDS)

ATGGCAAGGCAGCTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTCCCATGCTCGGAAATGGCGTCGTCGCTGGAATGCTTGCTTGGATTATGGCTACGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTTGTGACTACGCAACGAGTGAATACCTGTGTTGTGAATGCCACTGAGCCGGAGAATGGCAACGACGAGATGTTCTTCAGTAGAGAGCAACGAGCTGCTGTATGGGAGAAGAACATACTCATGGGAGGGAAGTGTCAGCTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGCTTCCTCTACTCACCTGGAAGTGA

Protein sequence

MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
BLAST of Cp4.1LG01g21370 vs. TrEMBL
Match: A0A0A0K8P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-64
Identity = 125/144 (86.81%), Postives = 131/144 (90.97%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQLQ++ HSSQ TAQVGMAG SLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV
Sbjct: 1   MARQLQII-HSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           IELNQEATVVTTQRVNT     TEPENGNDEMFFSREQ+A++W KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTQRVNT-----TEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VILYD NGN VTPA+T  PLLTWK
Sbjct: 121 VILYDPNGNAVTPAKTPRPLLTWK 138

BLAST of Cp4.1LG01g21370 vs. TrEMBL
Match: B9H7X5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-32
Identity = 80/144 (55.56%), Postives = 100/144 (69.44%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQL ++     +++ +G+   +LLLCAFALFMCASH+RKWRR W+AC  YG    DPV
Sbjct: 1   MARQL-LLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           I+LN   T++ T       ++A       D+  FS EQ  +VW KNILMGGKCQLPDFSG
Sbjct: 61  IQLNTVDTMLGTGEHG---IHA----GSRDDSMFSGEQVVSVWRKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VI+YDS+GNVVTPA+   PLLTWK
Sbjct: 121 VIIYDSDGNVVTPAKNPRPLLTWK 133

BLAST of Cp4.1LG01g21370 vs. TrEMBL
Match: B9SM70_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-30
Identity = 78/147 (53.06%), Postives = 96/147 (65.31%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQL +      +T+Q G+A  +LLLCAF LFMCASH+RKWRR  +    YG    +PV
Sbjct: 1   MARQLHLKQ-IPLSTSQAGLAATTLLLCAFVLFMCASHSRKWRRLGSC---YGSSNHNPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQR---AAVWEKNILMGGKCQLPD 120
           IELN +  +++T        N       NDE+  S EQ+     VW+KNILMGGKCQLPD
Sbjct: 61  IELNTDNLILSTGVYGARSCN-------NDELLVSGEQQQQGVPVWQKNILMGGKCQLPD 120

Query: 121 FSGVILYDSNGNVVTPARTQLPLLTWK 145
           FSGVI+YDS+GN+V PAR   PLLTWK
Sbjct: 121 FSGVIIYDSDGNIVNPARNPHPLLTWK 136

BLAST of Cp4.1LG01g21370 vs. TrEMBL
Match: U5GKQ4_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s06360g PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-30
Identity = 74/126 (58.73%), Postives = 89/126 (70.63%), Query Frame = 1

Query: 19  GMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTC 78
           G+A  +LLLCAFALF+CASH+RKWRR W+AC  YG    DPVI+LN E T+  T      
Sbjct: 2   GLAAVTLLLCAFALFVCASHSRKWRR-WSAC--YGSFDHDPVIQLNTEDTMPGT---GVY 61

Query: 79  VVNATEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQL 138
            ++A       D+  FS EQ A VW+KNIL GG+CQLPDFSGVI+YDS+GN VTPA+   
Sbjct: 62  GIHA----GSRDDSTFSGEQGAPVWKKNILTGGECQLPDFSGVIIYDSDGNAVTPAKNPR 117

Query: 139 PLLTWK 145
           PLLTWK
Sbjct: 122 PLLTWK 117

BLAST of Cp4.1LG01g21370 vs. TrEMBL
Match: A0A067DCJ2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048595mg PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 74/140 (52.86%), Postives = 93/140 (66.43%), Query Frame = 1

Query: 9   MHSSQ---ATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQ 68
           +H SQ    T+Q  +A  SLLLC FALF CASH+RK  RRW AC ++    ++PVIELN 
Sbjct: 5   LHFSQPPPGTSQTALAAVSLLLCVFALFACASHSRK-SRRWRACYEFLELEDEPVIELNN 64

Query: 69  EATVVTTQRVNTCVVNATEPENGNDEMFFSREQRAA-VWEKNILMGGKCQLPDFSGVILY 128
           E  + +        +        +D+  FS EQ+   +W+KNI+MGGKCQLPDFSGVI+Y
Sbjct: 65  EVMLQSPTEFQEYQLR------DDDQSGFSGEQQGVPIWQKNIIMGGKCQLPDFSGVIIY 124

Query: 129 DSNGNVVTPARTQLPLLTWK 145
           DS GNVVTPA+ QLPLLTWK
Sbjct: 125 DSEGNVVTPAKPQLPLLTWK 137

BLAST of Cp4.1LG01g21370 vs. TAIR10
Match: AT1G71740.1 (AT1G71740.1 unknown protein)

HSP 1 Score: 107.8 bits (268), Expect = 5.5e-24
Identity = 61/129 (47.29%), Postives = 79/129 (61.24%), Query Frame = 1

Query: 17  QVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVN 76
           ++G+A AS+ L   A     SH+++  RRW AC  YG    +PVI L  + T++    V 
Sbjct: 17  KMGLASASVRLVNLA-----SHSKRKLRRWAAC--YGSRDYEPVIYLQNDMTMMNNGGVY 76

Query: 77  TCVVNATEPENGNDEMFFSREQRAA-VWEKNILMGGKCQLPDFSGVILYDSNGNVVTPAR 136
                     NG+  M  S +QR   +W+KNILMGGKCQLPDFSGVILYD++G VV PA+
Sbjct: 77  EY--------NGDPSMLLSGDQRRGPLWQKNILMGGKCQLPDFSGVILYDADGQVVPPAK 130

Query: 137 TQLPLLTWK 145
             LPLLTWK
Sbjct: 137 NSLPLLTWK 130

BLAST of Cp4.1LG01g21370 vs. TAIR10
Match: AT1G49000.1 (AT1G49000.1 unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1

Query: 86  ENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGNVV------TPARTQLP 140
           +N  +E   + E+   +W++ ILMGGKC+  DFSGVI YDSNG ++      +P  T LP
Sbjct: 91  KNPPEEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLLNEVPPRSPRGTPLP 150

BLAST of Cp4.1LG01g21370 vs. NCBI nr
Match: gi|778710681|ref|XP_011656615.1| (PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-64
Identity = 125/144 (86.81%), Postives = 131/144 (90.97%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQLQ++ HSSQ TAQVGMAG SLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV
Sbjct: 1   MARQLQII-HSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           IELNQEATVVTTQRVNT     TEPENGNDEMFFSREQ+A++W KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTQRVNT-----TEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VILYD NGN VTPA+T  PLLTWK
Sbjct: 121 VILYDPNGNAVTPAKTPRPLLTWK 138

BLAST of Cp4.1LG01g21370 vs. NCBI nr
Match: gi|659113722|ref|XP_008456721.1| (PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 6.3e-62
Identity = 121/144 (84.03%), Postives = 129/144 (89.58%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQLQ++ HSSQ T QVGMAG SLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV
Sbjct: 1   MARQLQII-HSSQGTTQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           IELNQEATVVTT +     VNATEPEN N+EMFFSREQ+A++W KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTGQ-----VNATEPENDNNEMFFSREQQASIWHKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VILYD NGNVVTPA+T  PLLTWK
Sbjct: 121 VILYDPNGNVVTPAKTPRPLLTWK 138

BLAST of Cp4.1LG01g21370 vs. NCBI nr
Match: gi|224082514|ref|XP_002306724.1| (hypothetical protein POPTR_0005s22010g [Populus trichocarpa])

HSP 1 Score: 146.0 bits (367), Expect = 5.2e-32
Identity = 80/144 (55.56%), Postives = 100/144 (69.44%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQL ++     +++ +G+   +LLLCAFALFMCASH+RKWRR W+AC  YG    DPV
Sbjct: 1   MARQL-LLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           I+LN   T++ T       ++A       D+  FS EQ  +VW KNILMGGKCQLPDFSG
Sbjct: 61  IQLNTVDTMLGTGEHG---IHA----GSRDDSMFSGEQVVSVWRKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VI+YDS+GNVVTPA+   PLLTWK
Sbjct: 121 VIIYDSDGNVVTPAKNPRPLLTWK 133

BLAST of Cp4.1LG01g21370 vs. NCBI nr
Match: gi|743902975|ref|XP_011044834.1| (PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica])

HSP 1 Score: 145.6 bits (366), Expect = 6.7e-32
Identity = 80/144 (55.56%), Postives = 99/144 (68.75%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQL +      ++  +G+   +LLLCAFALFMCASH+RKWRR W+AC  YG    DPV
Sbjct: 1   MARQLHLKQIPLSSSG-LGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120
           I+LN E T++  +      ++A       D+  FS EQ  +VW KNILMGGKCQLPDFSG
Sbjct: 61  IQLNTEDTMLGIEHG----IHA----GSLDDSMFSGEQVVSVWRKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQLPLLTWK 145
           VI+YDS+GNVVTPA+   PLLTWK
Sbjct: 121 VIIYDSDGNVVTPAKNPRPLLTWK 132

BLAST of Cp4.1LG01g21370 vs. NCBI nr
Match: gi|255572301|ref|XP_002527089.1| (PREDICTED: uncharacterized protein LOC8281390 [Ricinus communis])

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30
Identity = 78/147 (53.06%), Postives = 96/147 (65.31%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQL +      +T+Q G+A  +LLLCAF LFMCASH+RKWRR  +    YG    +PV
Sbjct: 1   MARQLHLKQ-IPLSTSQAGLAATTLLLCAFVLFMCASHSRKWRRLGSC---YGSSNHNPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQR---AAVWEKNILMGGKCQLPD 120
           IELN +  +++T        N       NDE+  S EQ+     VW+KNILMGGKCQLPD
Sbjct: 61  IELNTDNLILSTGVYGARSCN-------NDELLVSGEQQQQGVPVWQKNILMGGKCQLPD 120

Query: 121 FSGVILYDSNGNVVTPARTQLPLLTWK 145
           FSGVI+YDS+GN+V PAR   PLLTWK
Sbjct: 121 FSGVIIYDSDGNIVNPARNPHPLLTWK 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K8P1_CUCSA1.2e-6486.81Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1[more]
B9H7X5_POPTR3.6e-3255.56Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1[more]
B9SM70_RICCO1.5e-3053.06Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1[more]
U5GKQ4_POPTR1.5e-3058.73Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s06360g P... [more]
A0A067DCJ2_CITSI2.6e-3052.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048595mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G71740.15.5e-2447.29 unknown protein[more]
AT1G49000.13.2e-0843.33 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778710681|ref|XP_011656615.1|1.8e-6486.81PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus][more]
gi|659113722|ref|XP_008456721.1|6.3e-6284.03PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo][more]
gi|224082514|ref|XP_002306724.1|5.2e-3255.56hypothetical protein POPTR_0005s22010g [Populus trichocarpa][more]
gi|743902975|ref|XP_011044834.1|6.7e-3255.56PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica][more]
gi|255572301|ref|XP_002527089.1|2.2e-3053.06PREDICTED: uncharacterized protein LOC8281390 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g21370.1Cp4.1LG01g21370.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33237FAMILY NOT NAMEDcoord: 94..144
score: 7.0E-33coord: 12..73
score: 7.0
NoneNo IPR availablePANTHERPTHR33237:SF4F14O23.12coord: 12..73
score: 7.0E-33coord: 94..144
score: 7.0

The following gene(s) are paralogous to this gene:

None