CmaCh04G024700 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G024700
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNucleolar protein 16, putative
LocationCma_Chr04 : 16969226 .. 16969660 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGCAACTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTCCCATGCTCGGAAATGGCGTCGTCGCTGGAATGCTTGCTTGGATTATGGCTATGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTAGTGACTACGCAACGAGTGAATACCTGTGTTGTGAATGCCACCGAGCCGGAGAATGACAACGACGAGATGTTCTTCAGCAGAGAGCAACGAGCTACTGTATGGGAGAAGAACATACTCATGGGTGGGAAGTGTCAACTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGTTTCCTCTACTCACCTGGAAGTGA

mRNA sequence

ATGGCAAGGCAACTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTCCCATGCTCGGAAATGGCGTCGTCGCTGGAATGCTTGCTTGGATTATGGCTATGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTAGTGACTACGCAACGAGTGAATACCTGTGTTGTGAATGCCACCGAGCCGGAGAATGACAACGACGAGATGTTCTTCAGCAGAGAGCAACGAGCTACTGTATGGGAGAAGAACATACTCATGGGTGGGAAGTGTCAACTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGTTTCCTCTACTCACCTGGAAGTGA

Coding sequence (CDS)

ATGGCAAGGCAACTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTCCCATGCTCGGAAATGGCGTCGTCGCTGGAATGCTTGCTTGGATTATGGCTATGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTAGTGACTACGCAACGAGTGAATACCTGTGTTGTGAATGCCACCGAGCCGGAGAATGACAACGACGAGATGTTCTTCAGCAGAGAGCAACGAGCTACTGTATGGGAGAAGAACATACTCATGGGTGGGAAGTGTCAACTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGTTTCCTCTACTCACCTGGAAGTGA

Protein sequence

MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENDNDEMFFSREQRATVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQFPLLTWK
BLAST of CmaCh04G024700 vs. TrEMBL
Match: A0A0A0K8P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.4e-63
Identity = 124/144 (86.11%), Postives = 130/144 (90.28%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQLQ++ HSSQ TAQVGMAG SLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV
Sbjct: 1   MARQLQII-HSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENDNDEMFFSREQRATVWEKNILMGGKCQLPDFSG 120
           IELNQEATVVTTQRVNT     TEPEN NDEMFFSREQ+A++W KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTQRVNT-----TEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQFPLLTWK 145
           VILYD NGN VTPA+T  PLLTWK
Sbjct: 121 VILYDPNGNAVTPAKTPRPLLTWK 138

BLAST of CmaCh04G024700 vs. TrEMBL
Match: B9H7X5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.1e-32
Identity = 80/144 (55.56%), Postives = 100/144 (69.44%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQL ++     +++ +G+   +LLLCAFALFMCASH+RKWRR W+AC  YG    DPV
Sbjct: 1   MARQL-LLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENDNDEMFFSREQRATVWEKNILMGGKCQLPDFSG 120
           I+LN   T++ T       ++A       D+  FS EQ  +VW KNILMGGKCQLPDFSG
Sbjct: 61  IQLNTVDTMLGTGEHG---IHA----GSRDDSMFSGEQVVSVWRKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQFPLLTWK 145
           VI+YDS+GNVVTPA+   PLLTWK
Sbjct: 121 VIIYDSDGNVVTPAKNPRPLLTWK 133

BLAST of CmaCh04G024700 vs. TrEMBL
Match: B9SM70_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.9e-31
Identity = 78/147 (53.06%), Postives = 96/147 (65.31%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQL +      +T+Q G+A  +LLLCAF LFMCASH+RKWRR  +    YG    +PV
Sbjct: 1   MARQLHLKQ-IPLSTSQAGLAATTLLLCAFVLFMCASHSRKWRRLGSC---YGSSNHNPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENDNDEMFFSREQR---ATVWEKNILMGGKCQLPD 120
           IELN +  +++T        N       NDE+  S EQ+     VW+KNILMGGKCQLPD
Sbjct: 61  IELNTDNLILSTGVYGARSCN-------NDELLVSGEQQQQGVPVWQKNILMGGKCQLPD 120

Query: 121 FSGVILYDSNGNVVTPARTQFPLLTWK 145
           FSGVI+YDS+GN+V PAR   PLLTWK
Sbjct: 121 FSGVIIYDSDGNIVNPARNPHPLLTWK 136

BLAST of CmaCh04G024700 vs. TrEMBL
Match: A0A067DCJ2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048595mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-30
Identity = 74/140 (52.86%), Postives = 93/140 (66.43%), Query Frame = 1

Query: 9   MHSSQ---ATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQ 68
           +H SQ    T+Q  +A  SLLLC FALF CASH+RK  RRW AC ++    ++PVIELN 
Sbjct: 5   LHFSQPPPGTSQTALAAVSLLLCVFALFACASHSRK-SRRWRACYEFLELEDEPVIELNN 64

Query: 69  EATVVTTQRVNTCVVNATEPENDNDEMFFSREQRAT-VWEKNILMGGKCQLPDFSGVILY 128
           E  + +        +       D+D+  FS EQ+   +W+KNI+MGGKCQLPDFSGVI+Y
Sbjct: 65  EVMLQSPTEFQEYQLR------DDDQSGFSGEQQGVPIWQKNIIMGGKCQLPDFSGVIIY 124

Query: 129 DSNGNVVTPARTQFPLLTWK 145
           DS GNVVTPA+ Q PLLTWK
Sbjct: 125 DSEGNVVTPAKPQLPLLTWK 137

BLAST of CmaCh04G024700 vs. TrEMBL
Match: U5GKQ4_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s06360g PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 74/126 (58.73%), Postives = 89/126 (70.63%), Query Frame = 1

Query: 19  GMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTC 78
           G+A  +LLLCAFALF+CASH+RKWRR W+AC  YG    DPVI+LN E T+  T      
Sbjct: 2   GLAAVTLLLCAFALFVCASHSRKWRR-WSAC--YGSFDHDPVIQLNTEDTMPGT---GVY 61

Query: 79  VVNATEPENDNDEMFFSREQRATVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQF 138
            ++A       D+  FS EQ A VW+KNIL GG+CQLPDFSGVI+YDS+GN VTPA+   
Sbjct: 62  GIHA----GSRDDSTFSGEQGAPVWKKNILTGGECQLPDFSGVIIYDSDGNAVTPAKNPR 117

Query: 139 PLLTWK 145
           PLLTWK
Sbjct: 122 PLLTWK 117

BLAST of CmaCh04G024700 vs. TAIR10
Match: AT1G71740.1 (AT1G71740.1 unknown protein)

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-22
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 1

Query: 17  QVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVN 76
           ++G+A AS+ L   A     SH+++  RRW AC  YG    +PVI L  + T++    V 
Sbjct: 17  KMGLASASVRLVNLA-----SHSKRKLRRWAAC--YGSRDYEPVIYLQNDMTMMNNGGVY 76

Query: 77  TCVVNATEPENDNDEMFFSREQRATVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPART 136
                  E   D   +    ++R  +W+KNILMGGKCQLPDFSGVILYD++G VV PA+ 
Sbjct: 77  -------EYNGDPSMLLSGDQRRGPLWQKNILMGGKCQLPDFSGVILYDADGQVVPPAKN 130

Query: 137 QFPLLTWK 145
             PLLTWK
Sbjct: 137 SLPLLTWK 130

BLAST of CmaCh04G024700 vs. TAIR10
Match: AT1G49000.1 (AT1G49000.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 7.2e-08
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 1

Query: 86  ENDNDEMFFSREQRATVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQFP 140
           +N  +E   + E+   +W++ ILMGGKC+  DFSGVI YDSNG ++     + P
Sbjct: 91  KNPPEEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLLNEVPPRSP 144

BLAST of CmaCh04G024700 vs. NCBI nr
Match: gi|778710681|ref|XP_011656615.1| (PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63
Identity = 124/144 (86.11%), Postives = 130/144 (90.28%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQLQ++ HSSQ TAQVGMAG SLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV
Sbjct: 1   MARQLQII-HSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENDNDEMFFSREQRATVWEKNILMGGKCQLPDFSG 120
           IELNQEATVVTTQRVNT     TEPEN NDEMFFSREQ+A++W KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTQRVNT-----TEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQFPLLTWK 145
           VILYD NGN VTPA+T  PLLTWK
Sbjct: 121 VILYDPNGNAVTPAKTPRPLLTWK 138

BLAST of CmaCh04G024700 vs. NCBI nr
Match: gi|659113722|ref|XP_008456721.1| (PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo])

HSP 1 Score: 247.3 bits (630), Expect = 1.6e-62
Identity = 122/144 (84.72%), Postives = 130/144 (90.28%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQLQ++ HSSQ T QVGMAG SLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV
Sbjct: 1   MARQLQII-HSSQGTTQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENDNDEMFFSREQRATVWEKNILMGGKCQLPDFSG 120
           IELNQEATVVTT +     VNATEPENDN+EMFFSREQ+A++W KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTGQ-----VNATEPENDNNEMFFSREQQASIWHKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQFPLLTWK 145
           VILYD NGNVVTPA+T  PLLTWK
Sbjct: 121 VILYDPNGNVVTPAKTPRPLLTWK 138

BLAST of CmaCh04G024700 vs. NCBI nr
Match: gi|224082514|ref|XP_002306724.1| (hypothetical protein POPTR_0005s22010g [Populus trichocarpa])

HSP 1 Score: 145.2 bits (365), Expect = 8.8e-32
Identity = 80/144 (55.56%), Postives = 100/144 (69.44%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQL ++     +++ +G+   +LLLCAFALFMCASH+RKWRR W+AC  YG    DPV
Sbjct: 1   MARQL-LLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENDNDEMFFSREQRATVWEKNILMGGKCQLPDFSG 120
           I+LN   T++ T       ++A       D+  FS EQ  +VW KNILMGGKCQLPDFSG
Sbjct: 61  IQLNTVDTMLGTGEHG---IHA----GSRDDSMFSGEQVVSVWRKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQFPLLTWK 145
           VI+YDS+GNVVTPA+   PLLTWK
Sbjct: 121 VIIYDSDGNVVTPAKNPRPLLTWK 133

BLAST of CmaCh04G024700 vs. NCBI nr
Match: gi|743902975|ref|XP_011044834.1| (PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica])

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-31
Identity = 80/144 (55.56%), Postives = 99/144 (68.75%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQL +      ++  +G+   +LLLCAFALFMCASH+RKWRR W+AC  YG    DPV
Sbjct: 1   MARQLHLKQIPLSSSG-LGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENDNDEMFFSREQRATVWEKNILMGGKCQLPDFSG 120
           I+LN E T++  +      ++A       D+  FS EQ  +VW KNILMGGKCQLPDFSG
Sbjct: 61  IQLNTEDTMLGIEHG----IHA----GSLDDSMFSGEQVVSVWRKNILMGGKCQLPDFSG 120

Query: 121 VILYDSNGNVVTPARTQFPLLTWK 145
           VI+YDS+GNVVTPA+   PLLTWK
Sbjct: 121 VIIYDSDGNVVTPAKNPRPLLTWK 132

BLAST of CmaCh04G024700 vs. NCBI nr
Match: gi|255572301|ref|XP_002527089.1| (PREDICTED: uncharacterized protein LOC8281390 [Ricinus communis])

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-30
Identity = 78/147 (53.06%), Postives = 96/147 (65.31%), Query Frame = 1

Query: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60
           MARQL +      +T+Q G+A  +LLLCAF LFMCASH+RKWRR  +    YG    +PV
Sbjct: 1   MARQLHLKQ-IPLSTSQAGLAATTLLLCAFVLFMCASHSRKWRRLGSC---YGSSNHNPV 60

Query: 61  IELNQEATVVTTQRVNTCVVNATEPENDNDEMFFSREQR---ATVWEKNILMGGKCQLPD 120
           IELN +  +++T        N       NDE+  S EQ+     VW+KNILMGGKCQLPD
Sbjct: 61  IELNTDNLILSTGVYGARSCN-------NDELLVSGEQQQQGVPVWQKNILMGGKCQLPD 120

Query: 121 FSGVILYDSNGNVVTPARTQFPLLTWK 145
           FSGVI+YDS+GN+V PAR   PLLTWK
Sbjct: 121 FSGVIIYDSDGNIVNPARNPHPLLTWK 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K8P1_CUCSA1.4e-6386.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1[more]
B9H7X5_POPTR6.1e-3255.56Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1[more]
B9SM70_RICCO8.9e-3153.06Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1[more]
A0A067DCJ2_CITSI1.5e-3052.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048595mg PE=4 SV=1[more]
U5GKQ4_POPTR2.6e-3058.73Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s06360g P... [more]
Match NameE-valueIdentityDescription
AT1G71740.11.0e-2244.53 unknown protein[more]
AT1G49000.17.2e-0842.59 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778710681|ref|XP_011656615.1|1.9e-6386.11PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus][more]
gi|659113722|ref|XP_008456721.1|1.6e-6284.72PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo][more]
gi|224082514|ref|XP_002306724.1|8.8e-3255.56hypothetical protein POPTR_0005s22010g [Populus trichocarpa][more]
gi|743902975|ref|XP_011044834.1|1.2e-3155.56PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica][more]
gi|255572301|ref|XP_002527089.1|1.3e-3053.06PREDICTED: uncharacterized protein LOC8281390 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G024700.1CmaCh04G024700.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33237FAMILY NOT NAMEDcoord: 12..73
score: 2.3E-32coord: 94..144
score: 2.3
NoneNo IPR availablePANTHERPTHR33237:SF4F14O23.12coord: 12..73
score: 2.3E-32coord: 94..144
score: 2.3

The following gene(s) are paralogous to this gene:

None