Cla013795 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013795
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 16489166 .. 16489597 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGCAGCTGCAAATGATGCATCCTTCACAAGGCACAGCTCAGATTGGCATGGCTGGTGTGAGCCTTCTCCTGTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGCCGTCGTTGGAATGCTTGCTTGGATTATGGTTACGAGTTTGAGGATCCTGTCATCGAGCTGAACCAAGAAGCAACGGTCGTGACTACGCAACGAGTGAATGCCTGTGTTGTGAATGCTGCCGAGTCGGAGAATGTCAATGATGAGATGTTCTTCAGCAGAGAGCAACAAGCTGCTATATGGCAGAAGAATATACTCATGGGCGGAAAGTGCCAGCTACCGGACTTCTCAGGTGTCATATTATATGACCCCAGTGGAAATGCTGTAACCCCTGCCAAAACTCAGCCTCCTTTACTCACCTGGAAGTGA

mRNA sequence

ATGGCAAGGCAGCTGCAAATGATGCATCCTTCACAAGGCACAGCTCAGATTGGCATGGCTGGTGTGAGCCTTCTCCTGTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGCCGTCGTTGGAATGCTTGCTTGGATTATGGTTACGAGTTTGAGGATCCTGTCATCGAGCTGAACCAAGAAGCAACGGTCGTGACTACGCAACGAGTGAATGCCTGTGTTGTGAATGCTGCCGAGTCGGAGAATGTCAATGATGAGATGTTCTTCAGCAGAGAGCAACAAGCTGCTATATGGCAGAAGAATATACTCATGGGCGGAAAGTGCCAGCTACCGGACTTCTCAGGTGTCATATTATATGACCCCAGTGGAAATGCTGTAACCCCTGCCAAAACTCAGCCTCCTTTACTCACCTGGAAGTGA

Coding sequence (CDS)

ATGGCAAGGCAGCTGCAAATGATGCATCCTTCACAAGGCACAGCTCAGATTGGCATGGCTGGTGTGAGCCTTCTCCTGTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGCCGTCGTTGGAATGCTTGCTTGGATTATGGTTACGAGTTTGAGGATCCTGTCATCGAGCTGAACCAAGAAGCAACGGTCGTGACTACGCAACGAGTGAATGCCTGTGTTGTGAATGCTGCCGAGTCGGAGAATGTCAATGATGAGATGTTCTTCAGCAGAGAGCAACAAGCTGCTATATGGCAGAAGAATATACTCATGGGCGGAAAGTGCCAGCTACCGGACTTCTCAGGTGTCATATTATATGACCCCAGTGGAAATGCTGTAACCCCTGCCAAAACTCAGCCTCCTTTACTCACCTGGAAGTGA

Protein sequence

MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGVILYDPSGNAVTPAKTQPPLLTWK

Homology

[Close]

BLAST of Cla013795 vs. TrEMBL
Match: A0A0A0K8P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.5e-65
Identity = 124/143 (86.71%), Postives = 130/143 (90.91%), Query Frame = 1


Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQ++H SQGTAQ+GMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           ELNQEATVVTTQR     VN  E EN NDEMFFSREQQA++W KNILMGGKCQLPDFSGV
Sbjct: 61  ELNQEATVVTTQR-----VNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           ILYDP+GNAVTPAKT  PLLTWK
Sbjct: 121 ILYDPNGNAVTPAKTPRPLLTWK 138

[Close]

BLAST of Cla013795 vs. TrEMBL
Match: B9H7X5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.2e-33
Identity = 79/143 (55.24%), Postives = 97/143 (67.83%), Query Frame = 1


Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLLLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           +LN   T++ T       ++A       D+  FS EQ  ++W+KNILMGGKCQLPDFSGV
Sbjct: 61  QLNTVDTMLGTGEHG---IHAGS----RDDSMFSGEQVVSVWRKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           I+YD  GN VTPAK   PLLTWK
Sbjct: 121 IIYDSDGNVVTPAKNPRPLLTWK 133

[Close]

BLAST of Cla013795 vs. TrEMBL
Match: A0A067DCJ2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048595mg PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-32
Identity = 79/144 (54.86%), Postives = 93/144 (64.58%), Query Frame = 1


Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MAR L    P  GT+Q  +A VSLLLC FALF CASH+RK  RRW AC ++    ++PVI
Sbjct: 1   MARPLHFSQPPPGTSQTALAAVSLLLCVFALFACASHSRK-SRRWRACYEFLELEDEPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAA-IWQKNILMGGKCQLPDFSG 120
           ELN E  + +        +        +D+  FS EQQ   IWQKNI+MGGKCQLPDFSG
Sbjct: 61  ELNNEVMLQSPTEFQEYQLRD------DDQSGFSGEQQGVPIWQKNIIMGGKCQLPDFSG 120

Query: 121 VILYDPSGNAVTPAKTQPPLLTWK 144
           VI+YD  GN VTPAK Q PLLTWK
Sbjct: 121 VIIYDSEGNVVTPAKPQLPLLTWK 137

[Close]

BLAST of Cla013795 vs. TrEMBL
Match: A0A067K1Q3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22269 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.1e-32
Identity = 79/145 (54.48%), Postives = 97/145 (66.90%), Query Frame = 1


Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      T+Q G+AG++LLLCAFALF CASH+RKWRR W AC  Y     +PVI
Sbjct: 1   MARQLHLTQIPLTTSQAGLAGMTLLLCAFALFKCASHSRKWRR-WGAC--YCSSDHNPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQ--AAIWQKNILMGGKCQLPDFS 120
           +LN EA +++T       ++     N N+E+  S EQQ    +WQ+NILMGGKCQLPDFS
Sbjct: 61  QLNTEAMMLSTG------IHTVHGRN-NNELMVSGEQQLQVPVWQRNILMGGKCQLPDFS 120

Query: 121 GVILYDPSGNAVTPAKTQPPLLTWK 144
           GVI+YD  GN VT  K   PLLTWK
Sbjct: 121 GVIIYDSDGNIVTQPKNPRPLLTWK 135

[Close]

BLAST of Cla013795 vs. TrEMBL
Match: B9SM70_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.1e-32
Identity = 80/146 (54.79%), Postives = 95/146 (65.07%), Query Frame = 1


Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      T+Q G+A  +LLLCAF LFMCASH+RKWRR  +    YG    +PVI
Sbjct: 1   MARQLHLKQIPLSTSQAGLAATTLLLCAFVLFMCASHSRKWRRLGSC---YGSSNHNPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQ---AAIWQKNILMGGKCQLPDF 120
           ELN +  +++T       V  A S N NDE+  S EQQ     +WQKNILMGGKCQLPDF
Sbjct: 61  ELNTDNLILSTG------VYGARSCN-NDELLVSGEQQQQGVPVWQKNILMGGKCQLPDF 120

Query: 121 SGVILYDPSGNAVTPAKTQPPLLTWK 144
           SGVI+YD  GN V PA+   PLLTWK
Sbjct: 121 SGVIIYDSDGNIVNPARNPHPLLTWK 136

[Close]

BLAST of Cla013795 vs. NCBI nr
Match: gi|778710681|ref|XP_011656615.1| (PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 3.5e-65
Identity = 124/143 (86.71%), Postives = 130/143 (90.91%), Query Frame = 1


Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQ++H SQGTAQ+GMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           ELNQEATVVTTQR     VN  E EN NDEMFFSREQQA++W KNILMGGKCQLPDFSGV
Sbjct: 61  ELNQEATVVTTQR-----VNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           ILYDP+GNAVTPAKT  PLLTWK
Sbjct: 121 ILYDPNGNAVTPAKTPRPLLTWK 138

[Close]

BLAST of Cla013795 vs. NCBI nr
Match: gi|659113722|ref|XP_008456721.1| (PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 3.3e-63
Identity = 121/143 (84.62%), Postives = 128/143 (89.51%), Query Frame = 1


Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQ++H SQGT Q+GMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTTQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           ELNQEATVVTT +     VNA E EN N+EMFFSREQQA+IW KNILMGGKCQLPDFSGV
Sbjct: 61  ELNQEATVVTTGQ-----VNATEPENDNNEMFFSREQQASIWHKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           ILYDP+GN VTPAKT  PLLTWK
Sbjct: 121 ILYDPNGNVVTPAKTPRPLLTWK 138

[Close]

BLAST of Cla013795 vs. NCBI nr
Match: gi|743902975|ref|XP_011044834.1| (PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica])

HSP 1 Score: 151.8 bits (382), Expect = 9.4e-34
Identity = 79/143 (55.24%), Postives = 100/143 (69.93%), Query Frame = 1


Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLHLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           +LN E T++  +       +   + +++D MF S EQ  ++W+KNILMGGKCQLPDFSGV
Sbjct: 61  QLNTEDTMLGIE-------HGIHAGSLDDSMF-SGEQVVSVWRKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           I+YD  GN VTPAK   PLLTWK
Sbjct: 121 IIYDSDGNVVTPAKNPRPLLTWK 132

[Close]

BLAST of Cla013795 vs. NCBI nr
Match: gi|224082514|ref|XP_002306724.1| (hypothetical protein POPTR_0005s22010g [Populus trichocarpa])

HSP 1 Score: 149.1 bits (375), Expect = 6.1e-33
Identity = 79/143 (55.24%), Postives = 97/143 (67.83%), Query Frame = 1


Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLLLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           +LN   T++ T       ++A       D+  FS EQ  ++W+KNILMGGKCQLPDFSGV
Sbjct: 61  QLNTVDTMLGTGEHG---IHAGS----RDDSMFSGEQVVSVWRKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           I+YD  GN VTPAK   PLLTWK
Sbjct: 121 IIYDSDGNVVTPAKNPRPLLTWK 133

[Close]

BLAST of Cla013795 vs. NCBI nr
Match: gi|568838285|ref|XP_006473145.1| (PREDICTED: uncharacterized protein LOC102611278 [Citrus sinensis])

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-32
Identity = 79/144 (54.86%), Postives = 93/144 (64.58%), Query Frame = 1


Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MAR L    P  GT+Q  +A VSLLLC FALF CASH+RK  RRW AC ++    ++PVI
Sbjct: 1   MARPLHFSQPPPGTSQTALAAVSLLLCVFALFACASHSRK-SRRWRACYEFLELEDEPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAA-IWQKNILMGGKCQLPDFSG 120
           ELN E  + +        +        +D+  FS EQQ   IWQKNI+MGGKCQLPDFSG
Sbjct: 61  ELNNEVMLQSPTEFQEYQLRD------DDQSGFSGEQQGVPIWQKNIIMGGKCQLPDFSG 120

Query: 121 VILYDPSGNAVTPAKTQPPLLTWK 144
           VI+YD  GN VTPAK Q PLLTWK
Sbjct: 121 VIIYDSEGNVVTPAKPQLPLLTWK 137

The following BLAST results are available for this feature:

BLAST of Cla013795 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8P1_CUCSA	2.5e-65	86.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1	[more]
B9H7X5_POPTR	4.2e-33	55.24	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1	[more]
A0A067DCJ2_CITSI	1.6e-32	54.86	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048595mg PE=4 SV=1	[more]
A0A067K1Q3_JATCU	6.1e-32	54.48	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22269 PE=4 SV=1	[more]
B9SM70_RICCO	6.1e-32	54.79	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1	[more]

BLAST of Cla013795 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778710681\|ref\|XP_011656615.1\|	3.5e-65	86.71	PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus]	[more]
gi\|659113722\|ref\|XP_008456721.1\|	3.3e-63	84.62	PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo]	[more]
gi\|743902975\|ref\|XP_011044834.1\|	9.4e-34	55.24	PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica]	[more]
gi\|224082514\|ref\|XP_002306724.1\|	6.1e-33	55.24	hypothetical protein POPTR_0005s22010g [Populus trichocarpa]	[more]
gi\|568838285\|ref\|XP_006473145.1\|	2.3e-32	54.86	PREDICTED: uncharacterized protein LOC102611278 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013795	Cla013795.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 93..143 score: 7.7E-33coord: 11..72 score: 7.7
None	No IPR available	PANTHER	PTHR33237:SF4	F14O23.12	coord: 93..143 score: 7.7E-33coord: 11..72 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013795	Cla97C08G149940	Watermelon (97103) v2	wmwmbB100
Cla013795	Csa6G052800	Cucumber (Chinese Long) v2	cuwmB460
Cla013795	MELO3C019968	Melon (DHL92) v3.5.1	mewmB311
Cla013795	ClCG08G007250	Watermelon (Charleston Gray)	wcgwmB400
Cla013795	CSPI06G04570	Wild cucumber (PI 183967)	cpiwmB475
Cla013795	Cucsa.364010	Cucumber (Gy14) v1	cgywmB660
Cla013795	CmaCh04G024700	Cucurbita maxima (Rimu)	cmawmB666
Cla013795	CmoCh04G025850	Cucurbita moschata (Rifu)	cmowmB661
Cla013795	Cp4.1LG01g21370	Cucurbita pepo (Zucchini)	cpewmB393
Cla013795	CsGy6G004550	Cucumber (Gy14) v2	cgybwmB430
Cla013795	MELO3C019968.2	Melon (DHL92) v3.6.1	medwmB305
Cla013795	Carg15812	Silver-seed gourd	carwmB0064
Cla013795	CsaV3_6G004920	Cucumber (Chinese Long) v3	cucwmB485
Cla013795	Bhi04G001253	Wax gourd	wgowmB320

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013795	Wax gourd	wgowmB309
Cla013795	Cucumber (Gy14) v1	cgywmB654
Cla013795	Cucurbita maxima (Rimu)	cmawmB259
Cla013795	Cucurbita maxima (Rimu)	cmawmB671
Cla013795	Cucurbita moschata (Rifu)	cmowmB249
Cla013795	Cucurbita moschata (Rifu)	cmowmB665
Cla013795	Cucurbita pepo (Zucchini)	cpewmB174
Cla013795	Cucurbita pepo (Zucchini)	cpewmB396
Cla013795	Bottle gourd (USVL1VR-Ls)	lsiwmB466
Cla013795	Bottle gourd (USVL1VR-Ls)	lsiwmB477
Cla013795	Silver-seed gourd	carwmB0066
Cla013795	Silver-seed gourd	carwmB0827