Cucsa.364010 (gene) Cucumber (Gy14) v1

NameCucsa.364010
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionNucleolar protein 16, putative
Locationscaffold03611 : 1598501 .. 1598917 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGCAACTGCAAATCATACATTCTTCACAAGGCACAGCCCAGGTTGGCATGGCTGGTGTGAGCCTTCTCCTCTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGTCGCCGTTGGAATGCTTGCTTGGATTATGGATATGAGTTTGAGGATCCTGTCATAGAGTTGAACCAAGAAGCAACAGTTGTGACTACGCAACGAGTGAATACCACCGAGCCGGAGAATGGCAATGATGAGATGTTCTTCAGTAGAGAGCAACAAGCTTCTATGTGGCACAAGAACATTCTCATGGGTGGGAAATGCCAACTACCGGACTTCTCAGGAGTCATATTATACGACCCCAATGGAAATGCTGTAACCCCTGCTAAAACTCCGCGTCCTTTACTCACCTGGAAGTGA

mRNA sequence

ATGGCAAGGCAACTGCAAATCATACATTCTTCACAAGGCACAGCCCAGGTTGGCATGGCTGGTGTGAGCCTTCTCCTCTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGTCGCCGTTGGAATGCTTGCTTGGATTATGGATATGAGTTTGAGGATCCTGTCATAGAGTTGAACCAAGAAGCAACAGTTGTGACTACGCAACGAGTGAATACCACCGAGCCGGAGAATGGCAATGATGAGATGTTCTTCAGTAGAGAGCAACAAGCTTCTATGTGGCACAAGAACATTCTCATGGGTGGGAAATGCCAACTACCGGACTTCTCAGGAGTCATATTATACGACCCCAATGGAAATGCTGTAACCCCTGCTAAAACTCCGCGTCCTTTACTCACCTGGAAGTGA

Coding sequence (CDS)

ATGGCAAGGCAACTGCAAATCATACATTCTTCACAAGGCACAGCCCAGGTTGGCATGGCTGGTGTGAGCCTTCTCCTCTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGTCGCCGTTGGAATGCTTGCTTGGATTATGGATATGAGTTTGAGGATCCTGTCATAGAGTTGAACCAAGAAGCAACAGTTGTGACTACGCAACGAGTGAATACCACCGAGCCGGAGAATGGCAATGATGAGATGTTCTTCAGTAGAGAGCAACAAGCTTCTATGTGGCACAAGAACATTCTCATGGGTGGGAAATGCCAACTACCGGACTTCTCAGGAGTCATATTATACGACCCCAATGGAAATGCTGTAACCCCTGCTAAAACTCCGCGTCCTTTACTCACCTGGAAGTGA

Protein sequence

MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDPNGNAVTPAKTPRPLLTWK*
BLAST of Cucsa.364010 vs. TrEMBL
Match: A0A0A0K8P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 8.7e-76
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1

Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP
Sbjct: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           NGNAVTPAKTPRPLLTWK
Sbjct: 121 NGNAVTPAKTPRPLLTWK 138

BLAST of Cucsa.364010 vs. TrEMBL
Match: B9H7X5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.4e-35
Identity = 81/138 (58.70%), Postives = 96/138 (69.57%), Query Frame = 1

Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLLLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           +LN   T++ T            D+  FS EQ  S+W KNILMGGKCQLPDFSGVI+YD 
Sbjct: 61  QLNTVDTMLGTGEHGIHA--GSRDDSMFSGEQVVSVWRKNILMGGKCQLPDFSGVIIYDS 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           +GN VTPAK PRPLLTWK
Sbjct: 121 DGNVVTPAKNPRPLLTWK 133

BLAST of Cucsa.364010 vs. TrEMBL
Match: A0A067K1Q3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22269 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-34
Identity = 79/139 (56.83%), Postives = 98/139 (70.50%), Query Frame = 1

Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      T+Q G+AG++LLLCAFALF CASH+RKWRR W AC  Y     +PVI
Sbjct: 1   MARQLHLTQIPLTTSQAGLAGMTLLLCAFALFKCASHSRKWRR-WGAC--YCSSDHNPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQ-QASMWHKNILMGGKCQLPDFSGVILYD 120
           +LN EA +++T  ++T    N N+ M    +Q Q  +W +NILMGGKCQLPDFSGVI+YD
Sbjct: 61  QLNTEAMMLSTG-IHTVHGRNNNELMVSGEQQLQVPVWQRNILMGGKCQLPDFSGVIIYD 120

Query: 121 PNGNAVTPAKTPRPLLTWK 139
            +GN VT  K PRPLLTWK
Sbjct: 121 SDGNIVTQPKNPRPLLTWK 135

BLAST of Cucsa.364010 vs. TrEMBL
Match: U5GKQ4_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s06360g PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-32
Identity = 76/121 (62.81%), Postives = 88/121 (72.73%), Query Frame = 1

Query: 18  GMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTT 77
           G+A V+LLLCAFALF+CASH+RKWRR W+AC  YG    DPVI+LN E T+  T      
Sbjct: 2   GLAAVTLLLCAFALFVCASHSRKWRR-WSAC--YGSFDHDPVIQLNTEDTMPGTGVYGIH 61

Query: 78  EPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDPNGNAVTPAKTPRPLLTW 137
                 D+  FS EQ A +W KNIL GG+CQLPDFSGVI+YD +GNAVTPAK PRPLLTW
Sbjct: 62  A--GSRDDSTFSGEQGAPVWKKNILTGGECQLPDFSGVIIYDSDGNAVTPAKNPRPLLTW 117

Query: 138 K 139
           K
Sbjct: 122 K 117

BLAST of Cucsa.364010 vs. TrEMBL
Match: B9SM70_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-32
Identity = 76/141 (53.90%), Postives = 92/141 (65.25%), Query Frame = 1

Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      T+Q G+A  +LLLCAF LFMCASH+RKWRR  +    YG    +PVI
Sbjct: 1   MARQLHLKQIPLSTSQAGLAATTLLLCAFVLFMCASHSRKWRRLGSC---YGSSNHNPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQAS---MWHKNILMGGKCQLPDFSGVIL 120
           ELN +  +++T         N  DE+  S EQQ     +W KNILMGGKCQLPDFSGVI+
Sbjct: 61  ELNTDNLILSTGVYGARSCNN--DELLVSGEQQQQGVPVWQKNILMGGKCQLPDFSGVII 120

Query: 121 YDPNGNAVTPAKTPRPLLTWK 139
           YD +GN V PA+ P PLLTWK
Sbjct: 121 YDSDGNIVNPARNPHPLLTWK 136

BLAST of Cucsa.364010 vs. TAIR10
Match: AT1G71740.1 (AT1G71740.1 unknown protein)

HSP 1 Score: 100.5 bits (249), Expect = 8.5e-22
Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 1

Query: 16  QVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVN 75
           ++G+A  S+ L   A     SH+++  RRW AC  YG    +PVI L  + T++    V 
Sbjct: 17  KMGLASASVRLVNLA-----SHSKRKLRRWAAC--YGSRDYEPVIYLQNDMTMMNNGGVY 76

Query: 76  TTEPENGNDEMFFSREQQAS-MWHKNILMGGKCQLPDFSGVILYDPNGNAVTPAKTPRPL 135
                NG+  M  S +Q+   +W KNILMGGKCQLPDFSGVILYD +G  V PAK   PL
Sbjct: 77  EY---NGDPSMLLSGDQRRGPLWQKNILMGGKCQLPDFSGVILYDADGQVVPPAKNSLPL 130

Query: 136 LTWK 139
           LTWK
Sbjct: 137 LTWK 130

BLAST of Cucsa.364010 vs. TAIR10
Match: AT1G49000.1 (AT1G49000.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 9.1e-08
Identity = 25/68 (36.76%), Postives = 40/68 (58.82%), Query Frame = 1

Query: 67  TVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDPNGNAV- 126
           T ++ + +     +N  +E   + E++  +W + ILMGGKC+  DFSGVI YD NG  + 
Sbjct: 78  TTLSNKAMTMVRRKNPPEEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLLN 137

Query: 127 -TPAKTPR 133
             P ++PR
Sbjct: 138 EVPPRSPR 145

BLAST of Cucsa.364010 vs. NCBI nr
Match: gi|778710681|ref|XP_011656615.1| (PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 1.3e-75
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1

Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP
Sbjct: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           NGNAVTPAKTPRPLLTWK
Sbjct: 121 NGNAVTPAKTPRPLLTWK 138

BLAST of Cucsa.364010 vs. NCBI nr
Match: gi|659113722|ref|XP_008456721.1| (PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 5.5e-71
Identity = 130/138 (94.20%), Postives = 133/138 (96.38%), Query Frame = 1

Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQIIHSSQGT QVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTTQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           ELNQEATVVTT +VN TEPEN N+EMFFSREQQAS+WHKNILMGGKCQLPDFSGVILYDP
Sbjct: 61  ELNQEATVVTTGQVNATEPENDNNEMFFSREQQASIWHKNILMGGKCQLPDFSGVILYDP 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           NGN VTPAKTPRPLLTWK
Sbjct: 121 NGNVVTPAKTPRPLLTWK 138

BLAST of Cucsa.364010 vs. NCBI nr
Match: gi|743902975|ref|XP_011044834.1| (PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica])

HSP 1 Score: 156.8 bits (395), Expect = 2.8e-35
Identity = 81/138 (58.70%), Postives = 97/138 (70.29%), Query Frame = 1

Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLHLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           +LN E T++  +           D+  FS EQ  S+W KNILMGGKCQLPDFSGVI+YD 
Sbjct: 61  QLNTEDTMLGIEHGIHA---GSLDDSMFSGEQVVSVWRKNILMGGKCQLPDFSGVIIYDS 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           +GN VTPAK PRPLLTWK
Sbjct: 121 DGNVVTPAKNPRPLLTWK 132

BLAST of Cucsa.364010 vs. NCBI nr
Match: gi|224082514|ref|XP_002306724.1| (hypothetical protein POPTR_0005s22010g [Populus trichocarpa])

HSP 1 Score: 156.0 bits (393), Expect = 4.8e-35
Identity = 81/138 (58.70%), Postives = 96/138 (69.57%), Query Frame = 1

Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLLLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           +LN   T++ T            D+  FS EQ  S+W KNILMGGKCQLPDFSGVI+YD 
Sbjct: 61  QLNTVDTMLGTGEHGIHA--GSRDDSMFSGEQVVSVWRKNILMGGKCQLPDFSGVIIYDS 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           +GN VTPAK PRPLLTWK
Sbjct: 121 DGNVVTPAKNPRPLLTWK 133

BLAST of Cucsa.364010 vs. NCBI nr
Match: gi|802725287|ref|XP_012086020.1| (PREDICTED: uncharacterized protein LOC105645119 [Jatropha curcas])

HSP 1 Score: 153.3 bits (386), Expect = 3.1e-34
Identity = 79/139 (56.83%), Postives = 98/139 (70.50%), Query Frame = 1

Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      T+Q G+AG++LLLCAFALF CASH+RKWRR W AC  Y     +PVI
Sbjct: 1   MARQLHLTQIPLTTSQAGLAGMTLLLCAFALFKCASHSRKWRR-WGAC--YCSSDHNPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQ-QASMWHKNILMGGKCQLPDFSGVILYD 120
           +LN EA +++T  ++T    N N+ M    +Q Q  +W +NILMGGKCQLPDFSGVI+YD
Sbjct: 61  QLNTEAMMLSTG-IHTVHGRNNNELMVSGEQQLQVPVWQRNILMGGKCQLPDFSGVIIYD 120

Query: 121 PNGNAVTPAKTPRPLLTWK 139
            +GN VT  K PRPLLTWK
Sbjct: 121 SDGNIVTQPKNPRPLLTWK 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K8P1_CUCSA8.7e-76100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1[more]
B9H7X5_POPTR3.4e-3558.70Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1[more]
A0A067K1Q3_JATCU2.2e-3456.83Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22269 PE=4 SV=1[more]
U5GKQ4_POPTR2.0e-3262.81Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s06360g P... [more]
B9SM70_RICCO5.9e-3253.90Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G71740.18.5e-2246.77 unknown protein[more]
AT1G49000.19.1e-0836.76 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778710681|ref|XP_011656615.1|1.3e-75100.00PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus][more]
gi|659113722|ref|XP_008456721.1|5.5e-7194.20PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo][more]
gi|743902975|ref|XP_011044834.1|2.8e-3558.70PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica][more]
gi|224082514|ref|XP_002306724.1|4.8e-3558.70hypothetical protein POPTR_0005s22010g [Populus trichocarpa][more]
gi|802725287|ref|XP_012086020.1|3.1e-3456.83PREDICTED: uncharacterized protein LOC105645119 [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.364010.1Cucsa.364010.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33237FAMILY NOT NAMEDcoord: 11..72
score: 5.9E-35coord: 88..138
score: 5.9
NoneNo IPR availablePANTHERPTHR33237:SF4F14O23.12coord: 88..138
score: 5.9E-35coord: 11..72
score: 5.9