Cucsa.364010.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.364010.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Nucleolar protein 16, putative
Location	scaffold03611 : 1598501 .. 1598917 (+)
Sequence length	417

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGCAACTGCAAATCATACATTCTTCACAAGGCACAGCCCAGGTTGGCATGGCTGGTGTGAGCCTTCTCCTCTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGTCGCCGTTGGAATGCTTGCTTGGATTATGGATATGAGTTTGAGGATCCTGTCATAGAGTTGAACCAAGAAGCAACAGTTGTGACTACGCAACGAGTGAATACCACCGAGCCGGAGAATGGCAATGATGAGATGTTCTTCAGTAGAGAGCAACAAGCTTCTATGTGGCACAAGAACATTCTCATGGGTGGGAAATGCCAACTACCGGACTTCTCAGGAGTCATATTATACGACCCCAATGGAAATGCTGTAACCCCTGCTAAAACTCCGCGTCCTTTACTCACCTGGAAGTGA

mRNA sequence

ATGGCAAGGCAACTGCAAATCATACATTCTTCACAAGGCACAGCCCAGGTTGGCATGGCTGGTGTGAGCCTTCTCCTCTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGTCGCCGTTGGAATGCTTGCTTGGATTATGGATATGAGTTTGAGGATCCTGTCATAGAGTTGAACCAAGAAGCAACAGTTGTGACTACGCAACGAGTGAATACCACCGAGCCGGAGAATGGCAATGATGAGATGTTCTTCAGTAGAGAGCAACAAGCTTCTATGTGGCACAAGAACATTCTCATGGGTGGGAAATGCCAACTACCGGACTTCTCAGGAGTCATATTATACGACCCCAATGGAAATGCTGTAACCCCTGCTAAAACTCCGCGTCCTTTACTCACCTGGAAGTGA

Coding sequence (CDS)

ATGGCAAGGCAACTGCAAATCATACATTCTTCACAAGGCACAGCCCAGGTTGGCATGGCTGGTGTGAGCCTTCTCCTCTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGTCGCCGTTGGAATGCTTGCTTGGATTATGGATATGAGTTTGAGGATCCTGTCATAGAGTTGAACCAAGAAGCAACAGTTGTGACTACGCAACGAGTGAATACCACCGAGCCGGAGAATGGCAATGATGAGATGTTCTTCAGTAGAGAGCAACAAGCTTCTATGTGGCACAAGAACATTCTCATGGGTGGGAAATGCCAACTACCGGACTTCTCAGGAGTCATATTATACGACCCCAATGGAAATGCTGTAACCCCTGCTAAAACTCCGCGTCCTTTACTCACCTGGAAGTGA

Protein sequence

MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDPNGNAVTPAKTPRPLLTWK*

Homology

[Close]

BLAST of Cucsa.364010.1 vs. TrEMBL
Match: A0A0A0K8P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 8.7e-76
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1


Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP
Sbjct: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           NGNAVTPAKTPRPLLTWK
Sbjct: 121 NGNAVTPAKTPRPLLTWK 138

[Close]

BLAST of Cucsa.364010.1 vs. TrEMBL
Match: B9H7X5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.4e-35
Identity = 81/138 (58.70%), Postives = 96/138 (69.57%), Query Frame = 1


Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLLLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           +LN   T++ T            D+  FS EQ  S+W KNILMGGKCQLPDFSGVI+YD 
Sbjct: 61  QLNTVDTMLGTGEHGIHA--GSRDDSMFSGEQVVSVWRKNILMGGKCQLPDFSGVIIYDS 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           +GN VTPAK PRPLLTWK
Sbjct: 121 DGNVVTPAKNPRPLLTWK 133

[Close]

BLAST of Cucsa.364010.1 vs. TrEMBL
Match: A0A067K1Q3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22269 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-34
Identity = 79/139 (56.83%), Postives = 98/139 (70.50%), Query Frame = 1


Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      T+Q G+AG++LLLCAFALF CASH+RKWRR W AC  Y     +PVI
Sbjct: 1   MARQLHLTQIPLTTSQAGLAGMTLLLCAFALFKCASHSRKWRR-WGAC--YCSSDHNPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQ-QASMWHKNILMGGKCQLPDFSGVILYD 120
           +LN EA +++T  ++T    N N+ M    +Q Q  +W +NILMGGKCQLPDFSGVI+YD
Sbjct: 61  QLNTEAMMLSTG-IHTVHGRNNNELMVSGEQQLQVPVWQRNILMGGKCQLPDFSGVIIYD 120

Query: 121 PNGNAVTPAKTPRPLLTWK 139
            +GN VT  K PRPLLTWK
Sbjct: 121 SDGNIVTQPKNPRPLLTWK 135

[Close]

BLAST of Cucsa.364010.1 vs. TrEMBL
Match: U5GKQ4_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s06360g PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-32
Identity = 76/121 (62.81%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 18  GMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTT 77
           G+A V+LLLCAFALF+CASH+RKWRR W+AC  YG    DPVI+LN E T+  T      
Sbjct: 2   GLAAVTLLLCAFALFVCASHSRKWRR-WSAC--YGSFDHDPVIQLNTEDTMPGTGVYGIH 61

Query: 78  EPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDPNGNAVTPAKTPRPLLTW 137
                 D+  FS EQ A +W KNIL GG+CQLPDFSGVI+YD +GNAVTPAK PRPLLTW
Sbjct: 62  A--GSRDDSTFSGEQGAPVWKKNILTGGECQLPDFSGVIIYDSDGNAVTPAKNPRPLLTW 117

Query: 138 K 139
           K
Sbjct: 122 K 117

[Close]

BLAST of Cucsa.364010.1 vs. TrEMBL
Match: B9SM70_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-32
Identity = 76/141 (53.90%), Postives = 92/141 (65.25%), Query Frame = 1


Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      T+Q G+A  +LLLCAF LFMCASH+RKWRR  +    YG    +PVI
Sbjct: 1   MARQLHLKQIPLSTSQAGLAATTLLLCAFVLFMCASHSRKWRRLGSC---YGSSNHNPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQAS---MWHKNILMGGKCQLPDFSGVIL 120
           ELN +  +++T         N  DE+  S EQQ     +W KNILMGGKCQLPDFSGVI+
Sbjct: 61  ELNTDNLILSTGVYGARSCNN--DELLVSGEQQQQGVPVWQKNILMGGKCQLPDFSGVII 120

Query: 121 YDPNGNAVTPAKTPRPLLTWK 139
           YD +GN V PA+ P PLLTWK
Sbjct: 121 YDSDGNIVNPARNPHPLLTWK 136

[Close]

BLAST of Cucsa.364010.1 vs. TAIR10
Match: AT1G71740.1 (AT1G71740.1 unknown protein)

HSP 1 Score: 100.5 bits (249), Expect = 8.5e-22
Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 1


Query: 16  QVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVN 75
           ++G+A  S+ L   A     SH+++  RRW AC  YG    +PVI L  + T++    V 
Sbjct: 17  KMGLASASVRLVNLA-----SHSKRKLRRWAAC--YGSRDYEPVIYLQNDMTMMNNGGVY 76

Query: 76  TTEPENGNDEMFFSREQQAS-MWHKNILMGGKCQLPDFSGVILYDPNGNAVTPAKTPRPL 135
                NG+  M  S +Q+   +W KNILMGGKCQLPDFSGVILYD +G  V PAK   PL
Sbjct: 77  EY---NGDPSMLLSGDQRRGPLWQKNILMGGKCQLPDFSGVILYDADGQVVPPAKNSLPL 130

Query: 136 LTWK 139
           LTWK
Sbjct: 137 LTWK 130

[Close]

BLAST of Cucsa.364010.1 vs. TAIR10
Match: AT1G49000.1 (AT1G49000.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 9.1e-08
Identity = 25/68 (36.76%), Postives = 40/68 (58.82%), Query Frame = 1


Query: 67  TVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDPNGNAV- 126
           T ++ + +     +N  +E   + E++  +W + ILMGGKC+  DFSGVI YD NG  + 
Sbjct: 78  TTLSNKAMTMVRRKNPPEEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLLN 137

Query: 127 -TPAKTPR 133
             P ++PR
Sbjct: 138 EVPPRSPR 145

[Close]

BLAST of Cucsa.364010.1 vs. NCBI nr
Match: gi|778710681|ref|XP_011656615.1| (PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 1.3e-75
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1


Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP
Sbjct: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           NGNAVTPAKTPRPLLTWK
Sbjct: 121 NGNAVTPAKTPRPLLTWK 138

[Close]

BLAST of Cucsa.364010.1 vs. NCBI nr
Match: gi|659113722|ref|XP_008456721.1| (PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 5.5e-71
Identity = 130/138 (94.20%), Postives = 133/138 (96.38%), Query Frame = 1


Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQIIHSSQGT QVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTTQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           ELNQEATVVTT +VN TEPEN N+EMFFSREQQAS+WHKNILMGGKCQLPDFSGVILYDP
Sbjct: 61  ELNQEATVVTTGQVNATEPENDNNEMFFSREQQASIWHKNILMGGKCQLPDFSGVILYDP 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           NGN VTPAKTPRPLLTWK
Sbjct: 121 NGNVVTPAKTPRPLLTWK 138

[Close]

BLAST of Cucsa.364010.1 vs. NCBI nr
Match: gi|743902975|ref|XP_011044834.1| (PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica])

HSP 1 Score: 156.8 bits (395), Expect = 2.8e-35
Identity = 81/138 (58.70%), Postives = 97/138 (70.29%), Query Frame = 1


Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLHLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           +LN E T++  +           D+  FS EQ  S+W KNILMGGKCQLPDFSGVI+YD 
Sbjct: 61  QLNTEDTMLGIEHGIHA---GSLDDSMFSGEQVVSVWRKNILMGGKCQLPDFSGVIIYDS 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           +GN VTPAK PRPLLTWK
Sbjct: 121 DGNVVTPAKNPRPLLTWK 132

[Close]

BLAST of Cucsa.364010.1 vs. NCBI nr
Match: gi|224082514|ref|XP_002306724.1| (hypothetical protein POPTR_0005s22010g [Populus trichocarpa])

HSP 1 Score: 156.0 bits (393), Expect = 4.8e-35
Identity = 81/138 (58.70%), Postives = 96/138 (69.57%), Query Frame = 1


Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLLLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGVILYDP 120
           +LN   T++ T            D+  FS EQ  S+W KNILMGGKCQLPDFSGVI+YD 
Sbjct: 61  QLNTVDTMLGTGEHGIHA--GSRDDSMFSGEQVVSVWRKNILMGGKCQLPDFSGVIIYDS 120

Query: 121 NGNAVTPAKTPRPLLTWK 139
           +GN VTPAK PRPLLTWK
Sbjct: 121 DGNVVTPAKNPRPLLTWK 133

[Close]

BLAST of Cucsa.364010.1 vs. NCBI nr
Match: gi|802725287|ref|XP_012086020.1| (PREDICTED: uncharacterized protein LOC105645119 [Jatropha curcas])

HSP 1 Score: 153.3 bits (386), Expect = 3.1e-34
Identity = 79/139 (56.83%), Postives = 98/139 (70.50%), Query Frame = 1


Query: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      T+Q G+AG++LLLCAFALF CASH+RKWRR W AC  Y     +PVI
Sbjct: 1   MARQLHLTQIPLTTSQAGLAGMTLLLCAFALFKCASHSRKWRR-WGAC--YCSSDHNPVI 60

Query: 61  ELNQEATVVTTQRVNTTEPENGNDEMFFSREQ-QASMWHKNILMGGKCQLPDFSGVILYD 120
           +LN EA +++T  ++T    N N+ M    +Q Q  +W +NILMGGKCQLPDFSGVI+YD
Sbjct: 61  QLNTEAMMLSTG-IHTVHGRNNNELMVSGEQQLQVPVWQRNILMGGKCQLPDFSGVIIYD 120

Query: 121 PNGNAVTPAKTPRPLLTWK 139
            +GN VT  K PRPLLTWK
Sbjct: 121 SDGNIVTQPKNPRPLLTWK 135

The following BLAST results are available for this feature:

BLAST of Cucsa.364010.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8P1_CUCSA	8.7e-76	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1	[more]
B9H7X5_POPTR	3.4e-35	58.70	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1	[more]
A0A067K1Q3_JATCU	2.2e-34	56.83	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22269 PE=4 SV=1	[more]
U5GKQ4_POPTR	2.0e-32	62.81	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s06360g P...	[more]
B9SM70_RICCO	5.9e-32	53.90	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1	[more]

BLAST of Cucsa.364010.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71740.1	8.5e-22	46.77	unknown protein	[more]
AT1G49000.1	9.1e-08	36.76	unknown protein	[more]

BLAST of Cucsa.364010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778710681\|ref\|XP_011656615.1\|	1.3e-75	100.00	PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus]	[more]
gi\|659113722\|ref\|XP_008456721.1\|	5.5e-71	94.20	PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo]	[more]
gi\|743902975\|ref\|XP_011044834.1\|	2.8e-35	58.70	PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica]	[more]
gi\|224082514\|ref\|XP_002306724.1\|	4.8e-35	58.70	hypothetical protein POPTR_0005s22010g [Populus trichocarpa]	[more]
gi\|802725287\|ref\|XP_012086020.1\|	3.1e-34	56.83	PREDICTED: uncharacterized protein LOC105645119 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.364010	Cucsa.364010	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.364010.1	Cucsa.364010.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.364010.1.CDS.1	Cucsa.364010.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 11..72 score: 5.9E-35coord: 88..138 score: 5.9
None	No IPR available	PANTHER	PTHR33237:SF4	F14O23.12	coord: 88..138 score: 5.9E-35coord: 11..72 score: 5.9