ClCG08G007250 (gene) Watermelon (Charleston Gray)

NameClCG08G007250
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionF14O23.12
LocationCG_Chr08 : 19655904 .. 19656335 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGCAGCTGCAAATGATGCATCCTTCACAAGGCACAGCTCAGATTGGCATGGCTGGTGTGAGCCTTCTCCTGTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGCCGTCGTTGGAATGCTTGCTTGGATTATGGTTACGAGTTTGAGGATCCTGTCATCGAGCTGAACCAAGAAGCAACGGTCGTGACTACGCAACGAGTGAATGCCTGTGTTGTGAATGCTGCCGAGTCGGAGAATGTCAATGATGAGATGTTCTTCAGCAGAGAGCAACAAGCTGCTATATGGCAGAAGAATATACTCATGGGCGGAAAGTGCCAGCTACCGGACTTCTCAGGTGTCATATTATATGACCCCAGTGGAAATGCTGTAACCCCTGCCAAAACTCAGCCTCCTTTACTCACCTGGAAGTGA

mRNA sequence

ATGGCAAGGCAGCTGCAAATGATGCATCCTTCACAAGGCACAGCTCAGATTGGCATGGCTGGTGTGAGCCTTCTCCTGTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGCCGTCGTTGGAATGCTTGCTTGGATTATGGTTACGAGTTTGAGGATCCTGTCATCGAGCTGAACCAAGAAGCAACGGTCGTGACTACGCAACGAGTGAATGCCTGTGTTGTGAATGCTGCCGAGTCGGAGAATGTCAATGATGAGATGTTCTTCAGCAGAGAGCAACAAGCTGCTATATGGCAGAAGAATATACTCATGGGCGGAAAGTGCCAGCTACCGGACTTCTCAGGTGTCATATTATATGACCCCAGTGGAAATGCTGTAACCCCTGCCAAAACTCAGCCTCCTTTACTCACCTGGAAGTGA

Coding sequence (CDS)

ATGGCAAGGCAGCTGCAAATGATGCATCCTTCACAAGGCACAGCTCAGATTGGCATGGCTGGTGTGAGCCTTCTCCTGTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGCCCGAAAATGGCGCCGTCGTTGGAATGCTTGCTTGGATTATGGTTACGAGTTTGAGGATCCTGTCATCGAGCTGAACCAAGAAGCAACGGTCGTGACTACGCAACGAGTGAATGCCTGTGTTGTGAATGCTGCCGAGTCGGAGAATGTCAATGATGAGATGTTCTTCAGCAGAGAGCAACAAGCTGCTATATGGCAGAAGAATATACTCATGGGCGGAAAGTGCCAGCTACCGGACTTCTCAGGTGTCATATTATATGACCCCAGTGGAAATGCTGTAACCCCTGCCAAAACTCAGCCTCCTTTACTCACCTGGAAGTGA

Protein sequence

MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGVILYDPSGNAVTPAKTQPPLLTWK
BLAST of ClCG08G007250 vs. TrEMBL
Match: A0A0A0K8P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.5e-65
Identity = 124/143 (86.71%), Postives = 130/143 (90.91%), Query Frame = 1

Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQ++H SQGTAQ+GMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           ELNQEATVVTTQR     VN  E EN NDEMFFSREQQA++W KNILMGGKCQLPDFSGV
Sbjct: 61  ELNQEATVVTTQR-----VNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           ILYDP+GNAVTPAKT  PLLTWK
Sbjct: 121 ILYDPNGNAVTPAKTPRPLLTWK 138

BLAST of ClCG08G007250 vs. TrEMBL
Match: B9H7X5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.2e-33
Identity = 79/143 (55.24%), Postives = 97/143 (67.83%), Query Frame = 1

Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLLLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           +LN   T++ T       ++A       D+  FS EQ  ++W+KNILMGGKCQLPDFSGV
Sbjct: 61  QLNTVDTMLGTGEHG---IHAGS----RDDSMFSGEQVVSVWRKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           I+YD  GN VTPAK   PLLTWK
Sbjct: 121 IIYDSDGNVVTPAKNPRPLLTWK 133

BLAST of ClCG08G007250 vs. TrEMBL
Match: A0A067DCJ2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048595mg PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-32
Identity = 79/144 (54.86%), Postives = 93/144 (64.58%), Query Frame = 1

Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MAR L    P  GT+Q  +A VSLLLC FALF CASH+RK  RRW AC ++    ++PVI
Sbjct: 1   MARPLHFSQPPPGTSQTALAAVSLLLCVFALFACASHSRK-SRRWRACYEFLELEDEPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAA-IWQKNILMGGKCQLPDFSG 120
           ELN E  + +        +        +D+  FS EQQ   IWQKNI+MGGKCQLPDFSG
Sbjct: 61  ELNNEVMLQSPTEFQEYQLRD------DDQSGFSGEQQGVPIWQKNIIMGGKCQLPDFSG 120

Query: 121 VILYDPSGNAVTPAKTQPPLLTWK 144
           VI+YD  GN VTPAK Q PLLTWK
Sbjct: 121 VIIYDSEGNVVTPAKPQLPLLTWK 137

BLAST of ClCG08G007250 vs. TrEMBL
Match: A0A067K1Q3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22269 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.1e-32
Identity = 79/145 (54.48%), Postives = 97/145 (66.90%), Query Frame = 1

Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      T+Q G+AG++LLLCAFALF CASH+RKWRR W AC  Y     +PVI
Sbjct: 1   MARQLHLTQIPLTTSQAGLAGMTLLLCAFALFKCASHSRKWRR-WGAC--YCSSDHNPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQ--AAIWQKNILMGGKCQLPDFS 120
           +LN EA +++T       ++     N N+E+  S EQQ    +WQ+NILMGGKCQLPDFS
Sbjct: 61  QLNTEAMMLSTG------IHTVHGRN-NNELMVSGEQQLQVPVWQRNILMGGKCQLPDFS 120

Query: 121 GVILYDPSGNAVTPAKTQPPLLTWK 144
           GVI+YD  GN VT  K   PLLTWK
Sbjct: 121 GVIIYDSDGNIVTQPKNPRPLLTWK 135

BLAST of ClCG08G007250 vs. TrEMBL
Match: B9SM70_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.1e-32
Identity = 80/146 (54.79%), Postives = 95/146 (65.07%), Query Frame = 1

Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      T+Q G+A  +LLLCAF LFMCASH+RKWRR  +    YG    +PVI
Sbjct: 1   MARQLHLKQIPLSTSQAGLAATTLLLCAFVLFMCASHSRKWRRLGSC---YGSSNHNPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQ---AAIWQKNILMGGKCQLPDF 120
           ELN +  +++T       V  A S N NDE+  S EQQ     +WQKNILMGGKCQLPDF
Sbjct: 61  ELNTDNLILSTG------VYGARSCN-NDELLVSGEQQQQGVPVWQKNILMGGKCQLPDF 120

Query: 121 SGVILYDPSGNAVTPAKTQPPLLTWK 144
           SGVI+YD  GN V PA+   PLLTWK
Sbjct: 121 SGVIIYDSDGNIVNPARNPHPLLTWK 136

BLAST of ClCG08G007250 vs. TAIR10
Match: AT1G71740.1 (AT1G71740.1 unknown protein)

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-21
Identity = 58/135 (42.96%), Postives = 71/135 (52.59%), Query Frame = 1

Query: 10  PSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVV 69
           P   T  + +  + L   +  L   ASH+++  RRW AC  YG    +PVI L  + T++
Sbjct: 6   PPSRTKPLTIFKMGLASASVRLVNLASHSKRKLRRWAAC--YGSRDYEPVIYLQNDMTMM 65

Query: 70  TTQRVNACVVNAAESENVNDEMFFSREQQAA-IWQKNILMGGKCQLPDFSGVILYDPSGN 129
               V           N +  M  S +Q+   +WQKNILMGGKCQLPDFSGVILYD  G 
Sbjct: 66  NNGGVY--------EYNGDPSMLLSGDQRRGPLWQKNILMGGKCQLPDFSGVILYDADGQ 125

Query: 130 AVTPAKTQPPLLTWK 144
            V PAK   PLLTWK
Sbjct: 126 VVPPAKNSLPLLTWK 130

BLAST of ClCG08G007250 vs. TAIR10
Match: AT1G49000.1 (AT1G49000.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-06
Identity = 22/54 (40.74%), Postives = 31/54 (57.41%), Query Frame = 1

Query: 85  ENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGVILYDPSGNAVTPAKTQPP 139
           +N  +E   + E++  +WQ+ ILMGGKC+  DFSGVI YD +G  +     + P
Sbjct: 91  KNPPEEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLLNEVPPRSP 144

BLAST of ClCG08G007250 vs. TAIR10
Match: AT3G18560.1 (AT3G18560.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 5.1e-06
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 1

Query: 96  EQQAAIWQKNILMGGKCQLPDFSGVILYDPSGNAVTPAKTQPP 139
           E++  +WQ+ ILMGGKC+  D+SGVI YD SG+ +     + P
Sbjct: 128 EEEYGVWQREILMGGKCEPLDYSGVIYYDCSGHQLKQVPPRSP 170

BLAST of ClCG08G007250 vs. NCBI nr
Match: gi|778710681|ref|XP_011656615.1| (PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 3.5e-65
Identity = 124/143 (86.71%), Postives = 130/143 (90.91%), Query Frame = 1

Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQ++H SQGTAQ+GMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           ELNQEATVVTTQR     VN  E EN NDEMFFSREQQA++W KNILMGGKCQLPDFSGV
Sbjct: 61  ELNQEATVVTTQR-----VNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           ILYDP+GNAVTPAKT  PLLTWK
Sbjct: 121 ILYDPNGNAVTPAKTPRPLLTWK 138

BLAST of ClCG08G007250 vs. NCBI nr
Match: gi|659113722|ref|XP_008456721.1| (PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 3.3e-63
Identity = 121/143 (84.62%), Postives = 128/143 (89.51%), Query Frame = 1

Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQLQ++H SQGT Q+GMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTTQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           ELNQEATVVTT +     VNA E EN N+EMFFSREQQA+IW KNILMGGKCQLPDFSGV
Sbjct: 61  ELNQEATVVTTGQ-----VNATEPENDNNEMFFSREQQASIWHKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           ILYDP+GN VTPAKT  PLLTWK
Sbjct: 121 ILYDPNGNVVTPAKTPRPLLTWK 138

BLAST of ClCG08G007250 vs. NCBI nr
Match: gi|743902975|ref|XP_011044834.1| (PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica])

HSP 1 Score: 151.8 bits (382), Expect = 9.4e-34
Identity = 79/143 (55.24%), Postives = 100/143 (69.93%), Query Frame = 1

Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLHLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           +LN E T++  +       +   + +++D MF S EQ  ++W+KNILMGGKCQLPDFSGV
Sbjct: 61  QLNTEDTMLGIE-------HGIHAGSLDDSMF-SGEQVVSVWRKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           I+YD  GN VTPAK   PLLTWK
Sbjct: 121 IIYDSDGNVVTPAKNPRPLLTWK 132

BLAST of ClCG08G007250 vs. NCBI nr
Match: gi|224082514|ref|XP_002306724.1| (hypothetical protein POPTR_0005s22010g [Populus trichocarpa])

HSP 1 Score: 149.1 bits (375), Expect = 6.1e-33
Identity = 79/143 (55.24%), Postives = 97/143 (67.83%), Query Frame = 1

Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MARQL +      ++ +G+  V+LLLCAFALFMCASH+RKWRR W+AC  YG    DPVI
Sbjct: 1   MARQLLLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRR-WSAC--YGPSDHDPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 120
           +LN   T++ T       ++A       D+  FS EQ  ++W+KNILMGGKCQLPDFSGV
Sbjct: 61  QLNTVDTMLGTGEHG---IHAGS----RDDSMFSGEQVVSVWRKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPSGNAVTPAKTQPPLLTWK 144
           I+YD  GN VTPAK   PLLTWK
Sbjct: 121 IIYDSDGNVVTPAKNPRPLLTWK 133

BLAST of ClCG08G007250 vs. NCBI nr
Match: gi|568838285|ref|XP_006473145.1| (PREDICTED: uncharacterized protein LOC102611278 [Citrus sinensis])

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-32
Identity = 79/144 (54.86%), Postives = 93/144 (64.58%), Query Frame = 1

Query: 1   MARQLQMMHPSQGTAQIGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60
           MAR L    P  GT+Q  +A VSLLLC FALF CASH+RK  RRW AC ++    ++PVI
Sbjct: 1   MARPLHFSQPPPGTSQTALAAVSLLLCVFALFACASHSRK-SRRWRACYEFLELEDEPVI 60

Query: 61  ELNQEATVVTTQRVNACVVNAAESENVNDEMFFSREQQAA-IWQKNILMGGKCQLPDFSG 120
           ELN E  + +        +        +D+  FS EQQ   IWQKNI+MGGKCQLPDFSG
Sbjct: 61  ELNNEVMLQSPTEFQEYQLRD------DDQSGFSGEQQGVPIWQKNIIMGGKCQLPDFSG 120

Query: 121 VILYDPSGNAVTPAKTQPPLLTWK 144
           VI+YD  GN VTPAK Q PLLTWK
Sbjct: 121 VIIYDSEGNVVTPAKPQLPLLTWK 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K8P1_CUCSA2.5e-6586.71Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052800 PE=4 SV=1[more]
B9H7X5_POPTR4.2e-3355.24Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22010g PE=4 SV=1[more]
A0A067DCJ2_CITSI1.6e-3254.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048595mg PE=4 SV=1[more]
A0A067K1Q3_JATCU6.1e-3254.48Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22269 PE=4 SV=1[more]
B9SM70_RICCO6.1e-3254.79Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296460 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G71740.14.3e-2142.96 unknown protein[more]
AT1G49000.11.0e-0640.74 unknown protein[more]
AT3G18560.15.1e-0646.51 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778710681|ref|XP_011656615.1|3.5e-6586.71PREDICTED: uncharacterized protein LOC105435757 [Cucumis sativus][more]
gi|659113722|ref|XP_008456721.1|3.3e-6384.62PREDICTED: uncharacterized protein LOC103496580 [Cucumis melo][more]
gi|743902975|ref|XP_011044834.1|9.4e-3455.24PREDICTED: uncharacterized protein LOC105139898 [Populus euphratica][more]
gi|224082514|ref|XP_002306724.1|6.1e-3355.24hypothetical protein POPTR_0005s22010g [Populus trichocarpa][more]
gi|568838285|ref|XP_006473145.1|2.3e-3254.86PREDICTED: uncharacterized protein LOC102611278 [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G007250.1ClCG08G007250.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33237FAMILY NOT NAMEDcoord: 93..143
score: 7.7E-33coord: 11..72
score: 7.7
NoneNo IPR availablePANTHERPTHR33237:SF4F14O23.12coord: 93..143
score: 7.7E-33coord: 11..72
score: 7.7

The following gene(s) are paralogous to this gene:

None