CmoCh04G022000 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G022000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransmembrane protein, putative
LocationCmo_Chr04 : 16345256 .. 16345732 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCCATAAATTCCCTCCTCTCAATCCCCTCCACCCATTCCGCTCCCCTCCTCTTCCCTCCGATCTCCCCTTCCGCCCACCGCCGCCGCCGACGACCACCGGCCTTCACCGTAACTGCCTCATCTCAACCAAAAGAACAAGCCGACAGCAACAGTTACTACGCGGACGGGAAACTAGTGGACGAGAGCATGATCGTGCTCCGGAAGCGGATCCACGAGATCAAGACCGCCGAGCAGACCCACGATCCGCCCCGCGATTGGTTCGACTGGGAGAAACGCTGCTATTCCAACTACGATTCCAACATCTGCGAGGCCCTCGGCTACCTTCAATCGCACTTAATGAACACCAGACCCAGCGTCGCCTTGGGAATGCTCGCGCTTCTTACTCTCAGCGTTCCGGTTTCCTCCGCCGTCGTTCTCCACCGCTTTATCGAAATCGCCGTCGGGCTTCTCGCCGGGATCCGTCTCTGTTAA

mRNA sequence

ATGAATTCCATAAATTCCCTCCTCTCAATCCCCTCCACCCATTCCGCTCCCCTCCTCTTCCCTCCGATCTCCCCTTCCGCCCACCGCCGCCGCCGACGACCACCGGCCTTCACCGTAACTGCCTCATCTCAACCAAAAGAACAAGCCGACAGCAACAGTTACTACGCGGACGGGAAACTAGTGGACGAGAGCATGATCGTGCTCCGGAAGCGGATCCACGAGATCAAGACCGCCGAGCAGACCCACGATCCGCCCCGCGATTGGTTCGACTGGGAGAAACGCTGCTATTCCAACTACGATTCCAACATCTGCGAGGCCCTCGGCTACCTTCAATCGCACTTAATGAACACCAGACCCAGCGTCGCCTTGGGAATGCTCGCGCTTCTTACTCTCAGCGTTCCGGTTTCCTCCGCCGTCGTTCTCCACCGCTTTATCGAAATCGCCGTCGGGCTTCTCGCCGGGATCCGTCTCTGTTAA

Coding sequence (CDS)

ATGAATTCCATAAATTCCCTCCTCTCAATCCCCTCCACCCATTCCGCTCCCCTCCTCTTCCCTCCGATCTCCCCTTCCGCCCACCGCCGCCGCCGACGACCACCGGCCTTCACCGTAACTGCCTCATCTCAACCAAAAGAACAAGCCGACAGCAACAGTTACTACGCGGACGGGAAACTAGTGGACGAGAGCATGATCGTGCTCCGGAAGCGGATCCACGAGATCAAGACCGCCGAGCAGACCCACGATCCGCCCCGCGATTGGTTCGACTGGGAGAAACGCTGCTATTCCAACTACGATTCCAACATCTGCGAGGCCCTCGGCTACCTTCAATCGCACTTAATGAACACCAGACCCAGCGTCGCCTTGGGAATGCTCGCGCTTCTTACTCTCAGCGTTCCGGTTTCCTCCGCCGTCGTTCTCCACCGCTTTATCGAAATCGCCGTCGGGCTTCTCGCCGGGATCCGTCTCTGTTAA
BLAST of CmoCh04G022000 vs. TrEMBL
Match: A0A0A0KPI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571480 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.8e-43
Identity = 103/162 (63.58%), Postives = 119/162 (73.46%), Query Frame = 1

Query: 1   MNSINSLLSIPSTHSAPLLFPPISPSAHRRRRRPPAFTVTASSQPKEQADSNS------- 60
           M SINSL     + S P LF   SP+AH   RR P   VT  +  ++ ADSN+       
Sbjct: 1   MESINSL-----SFSTPSLF---SPAAHPHVRRKPLPAVTVRASREQAADSNNNNKNNNN 60

Query: 61  -YYADGKLVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQS 120
            YYA GK+VDESMIVLRKRIHEIK AEQ  +PP DW DWEKR YS+YDS+ICEALGYLQS
Sbjct: 61  NYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQS 120

Query: 121 HLMNTRPSVALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAG 155
           HLMNTRPSVALGML L+ +SVP+SSA++LHRF+ IAV LLAG
Sbjct: 121 HLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAG 154

BLAST of CmoCh04G022000 vs. TrEMBL
Match: A0A0B2SDN4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_020104 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-29
Identity = 79/150 (52.67%), Postives = 103/150 (68.67%), Query Frame = 1

Query: 9   SIPSTHSAPLLFPPISPSAH-RRRRRPPAFTVTASSQPKEQADSNSYYADGKLVDESMIV 68
           SI   +S+P+LF P SPS      ++  +F  T +S  +  AD N     G+LVDESMI+
Sbjct: 3   SISLFNSSPILFHPFSPSRPCSNGKKMNSFAPTKASM-RGSADQNF---SGRLVDESMII 62

Query: 69  LRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLA 128
           LRKRIHE+   E+ ++PP DW DWEKR Y+ YDS ICEA+G LQS LMNTRPS+ALG +A
Sbjct: 63  LRKRIHEMNMIERNYEPPSDWMDWEKRYYNKYDSIICEAVGVLQSQLMNTRPSLALGAMA 122

Query: 129 LLTLSVPVSSAVVLHRFIEIAVGLLAGIRL 158
           L+ +SVP SSAV+L   +E+A  +LAG  L
Sbjct: 123 LVAISVPTSSAVLLFHLVELAKVVLAGAHL 148

BLAST of CmoCh04G022000 vs. TrEMBL
Match: A0A0R0EAH8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G125500 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-29
Identity = 79/150 (52.67%), Postives = 103/150 (68.67%), Query Frame = 1

Query: 9   SIPSTHSAPLLFPPISPSAH-RRRRRPPAFTVTASSQPKEQADSNSYYADGKLVDESMIV 68
           SI   +S+P+LF P SPS      ++  +F  T +S  +  AD N     G+LVDESMI+
Sbjct: 3   SISLFNSSPILFHPFSPSRPCSNGKKMNSFAPTKASM-RGSADQNF---SGRLVDESMII 62

Query: 69  LRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLA 128
           LRKRIHE+   E+ ++PP DW DWEKR Y+ YDS ICEA+G LQS LMNTRPS+ALG +A
Sbjct: 63  LRKRIHEMNMIERNYEPPSDWMDWEKRYYNKYDSIICEAVGVLQSQLMNTRPSLALGAMA 122

Query: 129 LLTLSVPVSSAVVLHRFIEIAVGLLAGIRL 158
           L+ +SVP SSAV+L   +E+A  +LAG  L
Sbjct: 123 LVAISVPTSSAVLLFHLVELAKVVLAGAHL 148

BLAST of CmoCh04G022000 vs. TrEMBL
Match: I3T362_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.4e-29
Identity = 76/149 (51.01%), Postives = 99/149 (66.44%), Query Frame = 1

Query: 9   SIPSTHSAPLLFPPISPSAHRRRRRPPAFTVTASSQPKEQADSNSYYADGKLVDESMIVL 68
           SI    S+P+ F    P+A     R  ++ + +S +  E          G+LVDESMI+L
Sbjct: 3   SISLIKSSPIPFLSNKPAAVSSNGRKSSYVMASSRREAENFG-------GRLVDESMIIL 62

Query: 69  RKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLAL 128
           RKRIHE+   E+ ++ P DW DWEKR Y++YDS ICEA+G LQ+ LMNTRPSVALG +AL
Sbjct: 63  RKRIHEMSMIEKNYEAPSDWMDWEKRYYTSYDSFICEAMGVLQTQLMNTRPSVALGAIAL 122

Query: 129 LTLSVPVSSAVVLHRFIEIAVGLLAGIRL 158
           + LSVP SSAVVLH  +E+A  +LAGI L
Sbjct: 123 IALSVPTSSAVVLHHLVELANNVLAGIHL 144

BLAST of CmoCh04G022000 vs. TrEMBL
Match: A0A068TXI8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032811001 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.5e-28
Identity = 62/113 (54.87%), Postives = 90/113 (79.65%), Query Frame = 1

Query: 46  KEQADSNSY-YADGKLVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNIC 105
           + +AD +   Y+ G++VDE+MIVLRKRIHE K  E+ ++PP +W DWEK+ Y++YDS IC
Sbjct: 3   RSEADHHDQNYSSGRMVDENMIVLRKRIHETKMIERNYEPPSEWMDWEKKYYTSYDSMIC 62

Query: 106 EALGYLQSHLMNTRPSVALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRL 158
           E +G+LQSHLM+TRPS+ALGM+AL+ LSVP S+ +V+ + +E+  G+LAGI +
Sbjct: 63  EVMGFLQSHLMDTRPSLALGMIALVGLSVPTSTFLVMSQLMELTKGVLAGINI 115

BLAST of CmoCh04G022000 vs. TAIR10
Match: AT2G01300.1 (AT2G01300.1 unknown protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-27
Identity = 70/148 (47.30%), Postives = 94/148 (63.51%), Query Frame = 1

Query: 6   SLLSIPSTHSAPLLFPPISPSAHRRRRRPPAFTVTASSQPKEQADSNSYYADGKLVDESM 65
           +L S P + S PL F P+  S      +    T+  S+      D   YY  G+LVDE+M
Sbjct: 4   TLFSSPPSIS-PLRFHPLVLSQRAIIPKKKKMTMRVSAAASSGKDH--YYGGGRLVDENM 63

Query: 66  IVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGM 125
           IVLRKRIHE+K  E+ ++PP  W DWEKR Y++YDS IC+++G LQS LMN+RP+VA+  
Sbjct: 64  IVLRKRIHEMKMVERNYEPPSHWMDWEKRFYNSYDSVICDSVGLLQSFLMNSRPTVAIAT 123

Query: 126 LALLTLSVPVSSAVVLHRFIEIAVGLLA 154
           L  L +SVPVSS V+  R I++   LLA
Sbjct: 124 LLFLLVSVPVSSTVIAFRLIDLLHWLLA 148

BLAST of CmoCh04G022000 vs. TAIR10
Match: AT1G15010.1 (AT1G15010.1 unknown protein)

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-27
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 1

Query: 54  YYADGKLVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSH 113
           YY  G+ VDE+M+VLRKRIHE+K  E+  +PP  W  WEKR Y NYD+ IC+AL  LQ+ 
Sbjct: 38  YYRGGRTVDENMVVLRKRIHEMKMVERNFEPPSHWMQWEKRFYCNYDATICDALTLLQTF 97

Query: 114 LMNTRPSVALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRL 158
           LMN+RPSVA G   LL +SVPVSSAV   R +++A+ LL  + +
Sbjct: 98  LMNSRPSVAFGTCLLLLVSVPVSSAVFAFRILDLALWLLDAVHV 141

BLAST of CmoCh04G022000 vs. NCBI nr
Match: gi|449465525|ref|XP_004150478.1| (PREDICTED: uncharacterized protein LOC101215395 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 5.5e-43
Identity = 103/162 (63.58%), Postives = 119/162 (73.46%), Query Frame = 1

Query: 1   MNSINSLLSIPSTHSAPLLFPPISPSAHRRRRRPPAFTVTASSQPKEQADSNS------- 60
           M SINSL     + S P LF   SP+AH   RR P   VT  +  ++ ADSN+       
Sbjct: 1   MESINSL-----SFSTPSLF---SPAAHPHVRRKPLPAVTVRASREQAADSNNNNKNNNN 60

Query: 61  -YYADGKLVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQS 120
            YYA GK+VDESMIVLRKRIHEIK AEQ  +PP DW DWEKR YS+YDS+ICEALGYLQS
Sbjct: 61  NYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQS 120

Query: 121 HLMNTRPSVALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAG 155
           HLMNTRPSVALGML L+ +SVP+SSA++LHRF+ IAV LLAG
Sbjct: 121 HLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAG 154

BLAST of CmoCh04G022000 vs. NCBI nr
Match: gi|659074607|ref|XP_008437695.1| (PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 1.9e-40
Identity = 94/146 (64.38%), Postives = 109/146 (74.66%), Query Frame = 1

Query: 17  PLLFPPISPSAHRRRRRPPAFTVTASSQPKEQADSNS--------YYADGKLVDESMIVL 76
           PLL  P+ P  H   RR P   VT  +  ++ AD+N+        YYA GK+VDESMIVL
Sbjct: 7   PLL--PLLPRPHPHGRRKPLPAVTVRASREQAADNNNNNNNNYNDYYAGGKVVDESMIVL 66

Query: 77  RKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLAL 136
           RKRIHEIK AEQ  +PP DW DWEKR YS+YDS+ICEALGYLQSHLMNTRPSVALGML L
Sbjct: 67  RKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLL 126

Query: 137 LTLSVPVSSAVVLHRFIEIAVGLLAG 155
           + +SVP+SSA++LHRF  IAV LLAG
Sbjct: 127 IIVSVPLSSALLLHRFFHIAVALLAG 150

BLAST of CmoCh04G022000 vs. NCBI nr
Match: gi|1009155099|ref|XP_015895530.1| (PREDICTED: uncharacterized protein LOC107429369 [Ziziphus jujuba])

HSP 1 Score: 143.3 bits (360), Expect = 3.7e-31
Identity = 79/157 (50.32%), Postives = 113/157 (71.97%), Query Frame = 1

Query: 6   SLLSIPSTHSAPLLFPPISPSAHRR---RRRPPAFTVTASSQ--PKEQADSNSYYADGKL 65
           S+  +PS++  PL F PIS S+ +    R+R  +  V ASS+    E  D N Y +  +L
Sbjct: 3   SISFLPSSN--PLSFNPISDSSGKTADFRKRASSTRVCASSRRSSSEANDQNYYSSSSRL 62

Query: 66  VDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPS 125
           VDE+MIVLRKRIHE+K  E+ ++PP DW +WEK+ Y++YDS +C+ALG LQS +MNTRPS
Sbjct: 63  VDENMIVLRKRIHEMKMVERNYEPPSDWNEWEKKYYTSYDSFVCQALGVLQSQMMNTRPS 122

Query: 126 VALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRL 158
           +ALGM+ L+ LSVP+S+ ++L R +EIA G+LAG+ +
Sbjct: 123 LALGMMVLILLSVPMSTTMILFRLMEIANGVLAGVHI 157

BLAST of CmoCh04G022000 vs. NCBI nr
Match: gi|697191665|ref|XP_009604904.1| (PREDICTED: uncharacterized protein LOC104099571 [Nicotiana tomentosiformis])

HSP 1 Score: 138.7 bits (348), Expect = 9.1e-30
Identity = 75/157 (47.77%), Postives = 106/157 (67.52%), Query Frame = 1

Query: 1   MNSINSLLSIPSTHSAPLLFPPISPSAHRRRRRPPAFTVTASSQPKEQADSNSYYADGKL 60
           M + ++   I S+   P LF P       +R+     + T +   K +A   +YY +G+L
Sbjct: 1   MATTSTSFLITSSPILPSLFSP-------KRKSSSRVSSTKTLAMKREAHDRNYY-NGRL 60

Query: 61  VDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPS 120
           VDE+MIVLRKRIHE+K  E+ ++PP  W DWEK  Y+NYDSNICEA+G+LQS LM+TRPS
Sbjct: 61  VDENMIVLRKRIHEMKMIERNYEPPAQWMDWEKSLYANYDSNICEAMGFLQSKLMDTRPS 120

Query: 121 VALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRL 158
           +ALGM+ L+ LSVP S+A+VL   +E+A  +LAG+ +
Sbjct: 121 LALGMVVLIALSVPTSTALVLFHLVELAKEVLAGLHI 149

BLAST of CmoCh04G022000 vs. NCBI nr
Match: gi|356575634|ref|XP_003555943.1| (PREDICTED: uncharacterized protein LOC100795681 [Glycine max])

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-29
Identity = 79/150 (52.67%), Postives = 103/150 (68.67%), Query Frame = 1

Query: 9   SIPSTHSAPLLFPPISPSAH-RRRRRPPAFTVTASSQPKEQADSNSYYADGKLVDESMIV 68
           SI   +S+P+LF P SPS      ++  +F  T +S  +  AD N     G+LVDESMI+
Sbjct: 3   SISLFNSSPILFHPFSPSRPCSNGKKMNSFAPTKASM-RGSADQNF---SGRLVDESMII 62

Query: 69  LRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLA 128
           LRKRIHE+   E+ ++PP DW DWEKR Y+ YDS ICEA+G LQS LMNTRPS+ALG +A
Sbjct: 63  LRKRIHEMNMIERNYEPPSDWMDWEKRYYNKYDSIICEAVGVLQSQLMNTRPSLALGAMA 122

Query: 129 LLTLSVPVSSAVVLHRFIEIAVGLLAGIRL 158
           L+ +SVP SSAV+L   +E+A  +LAG  L
Sbjct: 123 LVAISVPTSSAVLLFHLVELAKVVLAGAHL 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KPI5_CUCSA3.8e-4363.58Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571480 PE=4 SV=1[more]
A0A0B2SDN4_GLYSO1.1e-2952.67Uncharacterized protein OS=Glycine soja GN=glysoja_020104 PE=4 SV=1[more]
A0A0R0EAH8_SOYBN1.1e-2952.67Uncharacterized protein OS=Glycine max GN=GLYMA_20G125500 PE=4 SV=1[more]
I3T362_LOTJA2.4e-2951.01Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A068TXI8_COFCA3.5e-2854.87Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032811001 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G01300.11.5e-2747.30 unknown protein[more]
AT1G15010.15.8e-2754.81 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449465525|ref|XP_004150478.1|5.5e-4363.58PREDICTED: uncharacterized protein LOC101215395 [Cucumis sativus][more]
gi|659074607|ref|XP_008437695.1|1.9e-4064.38PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo][more]
gi|1009155099|ref|XP_015895530.1|3.7e-3150.32PREDICTED: uncharacterized protein LOC107429369 [Ziziphus jujuba][more]
gi|697191665|ref|XP_009604904.1|9.1e-3047.77PREDICTED: uncharacterized protein LOC104099571 [Nicotiana tomentosiformis][more]
gi|356575634|ref|XP_003555943.1|1.5e-2952.67PREDICTED: uncharacterized protein LOC100795681 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G022000.1CmoCh04G022000.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33782FAMILY NOT NAMEDcoord: 3..158
score: 4.2
NoneNo IPR availablePANTHERPTHR33782:SF1BY GENSCAN AND GENEFINDER-RELATEDcoord: 3..158
score: 4.2

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G022000CmoCh15G009900Cucurbita moschata (Rifu)cmocmoB254