MELO3C005312.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C005312.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMediator of RNA polymerase II transcription subunit
Locationchr09 : 20383009 .. 20383526 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTACAACGATTACTACGCGGGTGGGAAAGTAGTCGACGAGAGTATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTATTATTCCGACTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTGTTAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCTTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCTTCTTGATACCGGACCACCACAGTTTAGTTACGTGATTGATCCGATACGCCGTCGTTTTCTTTATTGTAACTTTTTCTTTTTGTTTTTTATAAGGACTTTTTGGTCTTTGTACAGCTTACATCTCATTGTCTGTTTCGCTTTCTGTTATTTTATGTAAACGGTCAAGTTTTTCATTTGTTTTTTTTTTTTT

mRNA sequence

TAATTACAACGATTACTACGCGGGTGGGAAAGTAGTCGACGAGAGTATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTATTATTCCGACTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTGTTAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCTTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCTTCTTGATACCGGACCACCACAGTTTAGTTACGTGATTGATCCGATACGCCGTCGTTTTCTTTATTGTAACTTTTTCTTTTTGTTTTTTATAAGGACTTTTTGGTCTTTGTACAGCTTACATCTCATTGTCTGTTTCGCTTTCTGTTATTTTATGTAAACGGTCAAGTTTTTCATTTGTTTTTTTTTTTTT

Coding sequence (CDS)

ATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTATTATTCCGACTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTGTTAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCTTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCTTCTTGA

Protein sequence

MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIVSVPLSSALLLHRFFHIAVALLAGFSPAS
Homology
[Close]
BLAST of MELO3C005312.2 vs. NCBI nr
Match: XP_008437695.1 (PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-42
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 4   LRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLL 63
           LRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLL
Sbjct: 64  LRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLL 123

Query: 64  LIIVSVPLSSALLLHRFFHIAVALLAGFSPAS 96
           LIIVSVPLSSALLLHRFFHIAVALLAGFSPAS
Sbjct: 124 LIIVSVPLSSALLLHRFFHIAVALLAGFSPAS 155

[Close]
BLAST of MELO3C005312.2 vs. NCBI nr
Match: XP_004150478.1 (PREDICTED: uncharacterized protein LOC101215395 [Cucumis sativus] >KGN51505.1 hypothetical protein Csa_5G571480 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 7.8e-41
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 5   RKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLL 64
           RKRIHEIKMAEQRQEPPADWLDWEKR+YSDYDSHICEALGYLQSHLMNTRPSVALGMLLL
Sbjct: 69  RKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMNTRPSVALGMLLL 128

Query: 65  IIVSVPLSSALLLHRFFHIAVALLAGFSPAS 96
           II+SVPLSSALLLHRF HIAVALLAGFSPAS
Sbjct: 129 IIISVPLSSALLLHRFLHIAVALLAGFSPAS 159

[Close]
BLAST of MELO3C005312.2 vs. NCBI nr
Match: XP_022993164.1 (uncharacterized protein LOC111489262 [Cucurbita maxima])

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 0 

Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKM EQ  EPP+DWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSV+LG
Sbjct: 63  MIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVSLG 122

Query: 61  MLLLIIVSVPLSSALLLHRFFHIAVALLAG 91
           +LLLI +SVPLSSA++LHRF  IA ALLAG
Sbjct: 123 ILLLITLSVPLSSAVILHRFIDIAAALLAG 152

[Close]
BLAST of MELO3C005312.2 vs. NCBI nr
Match: XP_022152316.1 (uncharacterized protein LOC111020063 [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 73/93 (78.49%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHE+KMAE+   PPADWL+WEKR+Y DYDSH+CEALGYLQSHLMNTRPSVAL 
Sbjct: 63  MIVLRKRIHEMKMAEREAAPPADWLEWEKRFYRDYDSHVCEALGYLQSHLMNTRPSVALA 122

Query: 61  MLLLIIVSVPLSSALLLHRFFHIAVALLAGFSP 94
            L L+ +SVP+SSAL+LHRFFHIA ALLAG  P
Sbjct: 123 FLTLLTLSVPVSSALILHRFFHIAAALLAGIHP 155

[Close]
BLAST of MELO3C005312.2 vs. NCBI nr
Match: XP_022939420.1 (uncharacterized protein LOC111445338 [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 0 

Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKM E+  EPP+DWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 61  MIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 120

Query: 61  MLLLIIVSVPLSSALLLHRFFHIAVALLAG 91
           +LLLI +SVPLSSA++LHRF  IA ALLAG
Sbjct: 121 ILLLITLSVPLSSAVILHRFIDIAAALLAG 150

[Close]
BLAST of MELO3C005312.2 vs. TAIR10
Match: AT2G01300.1 (unknown protein)

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-23
Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 0 

Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHE+KM E+  EPP+ W+DWEKR+Y+ YDS IC+++G LQS LMN+RP+VA+ 
Sbjct: 60  MIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYNSYDSVICDSVGLLQSFLMNSRPTVAIA 119

Query: 61  MLLLIIVSVPLSSALLLHRFFHIAVALLAGFSPA 95
            LL ++VSVP+SS ++  R   +   LLA  + A
Sbjct: 120 TLLFLLVSVPVSSTVIAFRLIDLLHWLLAAATSA 153

[Close]
BLAST of MELO3C005312.2 vs. TAIR10
Match: AT1G15010.1 (unknown protein)

HSP 1 Score: 103.6 bits (257), Expect = 6.8e-23
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           M+VLRKRIHE+KM E+  EPP+ W+ WEKR+Y +YD+ IC+AL  LQ+ LMN+RPSVA G
Sbjct: 49  MVVLRKRIHEMKMVERNFEPPSHWMQWEKRFYCNYDATICDALTLLQTFLMNSRPSVAFG 108

Query: 61  MLLLIIVSVPLSSALLLHRFFHIAVALL 89
             LL++VSVP+SSA+   R   +A+ LL
Sbjct: 109 TCLLLLVSVPVSSAVFAFRILDLALWLL 136

[Close]
BLAST of MELO3C005312.2 vs. TrEMBL
Match: tr|A0A1S3AV87|A0A1S3AV87_CUCME (uncharacterized protein LOC103483039 OS=Cucumis melo OX=3656 GN=LOC103483039 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.2e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 4   LRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLL 63
           LRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLL
Sbjct: 64  LRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLL 123

Query: 64  LIIVSVPLSSALLLHRFFHIAVALLAGFSPAS 96
           LIIVSVPLSSALLLHRFFHIAVALLAGFSPAS
Sbjct: 124 LIIVSVPLSSALLLHRFFHIAVALLAGFSPAS 155

[Close]
BLAST of MELO3C005312.2 vs. TrEMBL
Match: tr|A0A0A0KPI5|A0A0A0KPI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.2e-41
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 5   RKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLLL 64
           RKRIHEIKMAEQRQEPPADWLDWEKR+YSDYDSHICEALGYLQSHLMNTRPSVALGMLLL
Sbjct: 69  RKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMNTRPSVALGMLLL 128

Query: 65  IIVSVPLSSALLLHRFFHIAVALLAGFSPAS 96
           II+SVPLSSALLLHRF HIAVALLAGFSPAS
Sbjct: 129 IIISVPLSSALLLHRFLHIAVALLAGFSPAS 159

[Close]
BLAST of MELO3C005312.2 vs. TrEMBL
Match: tr|A0A166EE71|A0A166EE71_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007281 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-25
Identity = 58/86 (67.44%), Postives = 74/86 (86.05%), Query Frame = 0 

Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           +I+LRKRIHE+KM E+  EPPADW+DWEKRYY+ YD++ICEA+G+LQS LMNTRPS+A+G
Sbjct: 58  LIILRKRIHEMKMIERNYEPPADWMDWEKRYYASYDTYICEAMGFLQSQLMNTRPSLAIG 117

Query: 61  MLLLIIVSVPLSSALLLHRFFHIAVA 87
           M+ LI +SVP S+ALL+ RFF I  A
Sbjct: 118 MMALIALSVPTSTALLVSRFFDIVNA 143

[Close]
BLAST of MELO3C005312.2 vs. TrEMBL
Match: tr|A0A1S3V3X5|A0A1S3V3X5_VIGRR (uncharacterized protein LOC106771386 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771386 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-24
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 0 

Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MI LRKRIHE+ M E+  EPP+DW+DWEKRYY+ YDS ICEALG LQ+ LMNTRPS ALG
Sbjct: 57  MITLRKRIHEMNMIERNYEPPSDWMDWEKRYYTKYDSIICEALGVLQTQLMNTRPSFALG 116

Query: 61  MLLLIIVSVPLSSALLLHRFFHIAVALLAGFSPA 95
            + L+ +SVP SSA+    F H A A+LAG  P+
Sbjct: 117 AMALVAISVPTSSAVAFFHFVHFAKAVLAGVHPS 150

[Close]
BLAST of MELO3C005312.2 vs. TrEMBL
Match: tr|V7BAV0|V7BAV0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G036700g PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-24
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 0 

Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MI LRKRIHE+ M E+  EPP+DW++WEKRYY+ YDS ICEA+G LQ+HLMNTRP +ALG
Sbjct: 52  MITLRKRIHEMNMIERNYEPPSDWMEWEKRYYTKYDSIICEAVGVLQTHLMNTRPGLALG 111

Query: 61  MLLLIIVSVPLSSALLLHRFFHIAVALLAGFSPA 95
           ++ L+ +SVP SSA+L      +A ALLAG +P+
Sbjct: 112 VMALVAISVPTSSAMLFFHLVELAKALLAGVTPS 145

The following BLAST results are available for this feature:
BLAST of MELO3C005312.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008437695.11.1e-42100.00PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo][more]
XP_004150478.17.8e-4196.70PREDICTED: uncharacterized protein LOC101215395 [Cucumis sativus] >KGN51505.1 hy... [more]
XP_022993164.11.2e-3384.44uncharacterized protein LOC111489262 [Cucurbita maxima][more]
XP_022152316.11.6e-3378.49uncharacterized protein LOC111020063 [Momordica charantia][more]
XP_022939420.11.6e-3384.44uncharacterized protein LOC111445338 [Cucurbita moschata][more]
BLAST of MELO3C005312.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G01300.11.4e-2355.32unknown protein[more]
AT1G15010.16.8e-2357.95unknown protein[more]
BLAST of MELO3C005312.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C005312.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AV87|A0A1S3AV87_CUCME7.2e-43100.00uncharacterized protein LOC103483039 OS=Cucumis melo OX=3656 GN=LOC103483039 PE=... [more]
tr|A0A0A0KPI5|A0A0A0KPI5_CUCSA5.2e-4196.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1[more]
tr|A0A166EE71|A0A166EE71_DAUCA1.8e-2567.44Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007281 ... [more]
tr|A0A1S3V3X5|A0A1S3V3X5_VIGRR2.0e-2462.77uncharacterized protein LOC106771386 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
tr|V7BAV0|V7BAV0_PHAVU2.0e-2460.64Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G036700g PE=4 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005312.2.1MELO3C005312.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33782:SF5BY GENSCAN AND GENEFINDER-RELATEDcoord: 1..90
NoneNo IPR availablePANTHERPTHR33782FAMILY NOT NAMEDcoord: 1..90

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C005312.2Csa5G571480Cucumber (Chinese Long) v2cumedB329
MELO3C005312.2CSPI05G19680Wild cucumber (PI 183967)cpimedB331
MELO3C005312.2Cucsa.280450Cucumber (Gy14) v1cgymedB463
MELO3C005312.2CmaCh15G009500Cucurbita maxima (Rimu)cmamedB293
MELO3C005312.2CmoCh04G022000Cucurbita moschata (Rifu)cmomedB716
MELO3C005312.2CmoCh15G009900Cucurbita moschata (Rifu)cmomedB279
MELO3C005312.2Lsi09G006510Bottle gourd (USVL1VR-Ls)lsimedB013
MELO3C005312.2Cla003918Watermelon (97103) v1medwmB029
MELO3C005312.2ClCG01G006150Watermelon (Charleston Gray)medwcgB017
MELO3C005312.2Cla97C01G006460Watermelon (97103) v2medwmbB007
MELO3C005312.2Bhi12G000775Wax gourdmedwgoB011
MELO3C005312.2Carg26350Silver-seed gourdcarmedB0197
MELO3C005312.2Carg26046Silver-seed gourdcarmedB0438
MELO3C005312.2CsaV3_5G028510Cucumber (Chinese Long) v3cucmedB342
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C005312.2Cucumber (Gy14) v2cgybmedB293
MELO3C005312.2Cucumber (Gy14) v2cgybmedB309
MELO3C005312.2Cucumber (Gy14) v1cgymedB470
MELO3C005312.2Cucurbita maxima (Rimu)cmamedB712
MELO3C005312.2Cucurbita maxima (Rimu)cmamedB723
MELO3C005312.2Cucurbita moschata (Rifu)cmomedB393
MELO3C005312.2Cucurbita moschata (Rifu)cmomedB708
MELO3C005312.2Cucurbita pepo (Zucchini)cpemedB023
MELO3C005312.2Cucurbita pepo (Zucchini)cpemedB176
MELO3C005312.2Wild cucumber (PI 183967)cpimedB345
MELO3C005312.2Cucumber (Chinese Long) v2cumedB345
MELO3C005312.2Melon (DHL92) v3.6.1medmedB002
MELO3C005312.2Bottle gourd (USVL1VR-Ls)lsimedB293
MELO3C005312.2Watermelon (Charleston Gray)medwcgB026
MELO3C005312.2Watermelon (97103) v1medwmB016
MELO3C005312.2Silver-seed gourdcarmedB0842
MELO3C005312.2Silver-seed gourdcarmedB1030
MELO3C005312.2Cucumber (Chinese Long) v3cucmedB357
MELO3C005312.2Watermelon (97103) v2medwmbB016
MELO3C005312.2Watermelon (97103) v2medwmbB022
MELO3C005312.2Wax gourdmedwgoB046