Cucsa.280450 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.280450
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionMediator of RNA polymerase II transcription subunit 18, putative
Locationscaffold02633 : 377733 .. 378111 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCGTCGCGAGAACAAGCAGCTGACAGCAACAATAACAATAAAAACAACAACAACAATTACTACGCAGGTGGGAAAGTAGTCGACGAGAGTATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTGGTATTCCGATTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTATCAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCCTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCGTCTTGA

mRNA sequence

AGCGTCGCGAGAACAAGCAGCTGacagcaacaataacaataaaaacaacaacaacaaTTACTACGCAGGTGGGAAAGTAGTCGACGAGAGTATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTGGTATTCCGATTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTATCAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCCTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCGTCTTGA

Coding sequence (CDS)

AGCGTCGCGAGAACAAGCAGCTGACAGCAACAATAACAATAAAAACAACAACAACAATTACTACGCAGGTGGGAAAGTAGTCGACGAGAGTATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTGGTATTCCGATTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTATCAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCCTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCGTCTTGA

Protein sequence

ASREQAADSNNNNKNNNNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS*
Homology
[Close]
BLAST of Cucsa.280450 vs. TrEMBL
Match: A0A0A0KPI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571480 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.8e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   ASREQAADSNNNNKNNNNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKR 60
           ASREQAADSNNNNKNNNNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKR
Sbjct: 35  ASREQAADSNNNNKNNNNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKR 94

Query: 61  WYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAG 120
           WYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAG
Sbjct: 95  WYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAG 154

Query: 121 FSPAS 126
           FSPAS
Sbjct: 155 FSPAS 159

[Close]
BLAST of Cucsa.280450 vs. TrEMBL
Match: A0A166EE71_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007281 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.8e-31
Identity = 63/100 (63.00%), Postives = 84/100 (84.00%), Query Frame = 1 

Query: 17  NNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYL 76
           N+  Y+G +VVDE++I+LRKRIHE+KM E+  EPPADW+DWEKR+Y+ YD++ICEA+G+L
Sbjct: 44  NSQNYSGHRVVDENLIILRKRIHEMKMIERNYEPPADWMDWEKRYYASYDTYICEAMGFL 103

Query: 77  QSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVA 117
           QS LMNTRPS+A+GM+ LI +SVP S+ALL+ RF  I  A
Sbjct: 104 QSQLMNTRPSLAIGMMALIALSVPTSTALLVSRFFDIVNA 143

[Close]
BLAST of Cucsa.280450 vs. TrEMBL
Match: W9RD66_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025881 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.6e-30
Identity = 58/110 (52.73%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 9   SNNNNKNNNNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSH 68
           +N+++ +++N+Y +  ++VDE+MIVLRKRIHE+KM E+  EPP+DW+DWEK++Y+ YDS 
Sbjct: 48  ANHHHNHHHNHYMSSSRLVDENMIVLRKRIHEMKMVERNYEPPSDWMDWEKKYYTSYDSL 107

Query: 69  ICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALL 119
           IC+ +G+LQS +MNTRPS+ALGM++L+I+S+P SS ++L   + +A  LL
Sbjct: 108 ICQMMGFLQSQMMNTRPSLALGMVVLVILSLPTSSVMVLFHLMGLAKELL 157

[Close]
BLAST of Cucsa.280450 vs. TrEMBL
Match: I3T362_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.3e-29
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 1 

Query: 2   SREQAADSNNNNKNNN---------NNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPA 61
           S + AA S+N  K++           N+  GG++VDESMI+LRKRIHE+ M E+  E P+
Sbjct: 16  SNKPAAVSSNGRKSSYVMASSRREAENF--GGRLVDESMIILRKRIHEMSMIEKNYEAPS 75

Query: 62  DWLDWEKRWYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLH 121
           DW+DWEKR+Y+ YDS ICEA+G LQ+ LMNTRPSVALG + LI +SVP SSA++LH  + 
Sbjct: 76  DWMDWEKRYYTSYDSFICEAMGVLQTQLMNTRPSVALGAIALIALSVPTSSAVVLHHLVE 135

[Close]
BLAST of Cucsa.280450 vs. TrEMBL
Match: V7BAV0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G036700g PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.3e-29
Identity = 61/101 (60.40%), Postives = 81/101 (80.20%), Query Frame = 1 

Query: 24  GKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMNT 83
           G++VDE MI LRKRIHE+ M E+  EPP+DW++WEKR+Y+ YDS ICEA+G LQ+HLMNT
Sbjct: 45  GRLVDEGMITLRKRIHEMNMIERNYEPPSDWMEWEKRYYTKYDSIICEAVGVLQTHLMNT 104

Query: 84  RPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAGFSPA 125
           RP +ALG++ L+ ISVP SSA+L    + +A ALLAG +P+
Sbjct: 105 RPGLALGVMALVAISVPTSSAMLFFHLVELAKALLAGVTPS 145

[Close]
BLAST of Cucsa.280450 vs. TAIR10
Match: AT2G01300.1 (AT2G01300.1 unknown protein)

HSP 1 Score: 130.6 bits (327), Expect = 6.9e-31
Identity = 58/110 (52.73%), Postives = 85/110 (77.27%), Query Frame = 1 

Query: 15  NNNNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALG 74
           +  ++YY GG++VDE+MIVLRKRIHE+KM E+  EPP+ W+DWEKR+Y+ YDS IC+++G
Sbjct: 44  SGKDHYYGGGRLVDENMIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYNSYDSVICDSVG 103

Query: 75  YLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAGFSPA 125
            LQS LMN+RP+VA+  LL +++SVP+SS ++  R + +   LLA  + A
Sbjct: 104 LLQSFLMNSRPTVAIATLLFLLVSVPVSSTVIAFRLIDLLHWLLAAATSA 153

[Close]
BLAST of Cucsa.280450 vs. TAIR10
Match: AT1G15010.1 (AT1G15010.1 unknown protein)

HSP 1 Score: 127.5 bits (319), Expect = 5.9e-30
Identity = 58/100 (58.00%), Postives = 79/100 (79.00%), Query Frame = 1 

Query: 19  NYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQS 78
           +YY GG+ VDE+M+VLRKRIHE+KM E+  EPP+ W+ WEKR+Y +YD+ IC+AL  LQ+
Sbjct: 37  DYYRGGRTVDENMVVLRKRIHEMKMVERNFEPPSHWMQWEKRFYCNYDATICDALTLLQT 96

Query: 79  HLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALL 119
            LMN+RPSVA G  LL+++SVP+SSA+   R L +A+ LL
Sbjct: 97  FLMNSRPSVAFGTCLLLLVSVPVSSAVFAFRILDLALWLL 136

[Close]
BLAST of Cucsa.280450 vs. NCBI nr
Match: gi|449465525|ref|XP_004150478.1| (PREDICTED: uncharacterized protein LOC101215395 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 6.9e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   ASREQAADSNNNNKNNNNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKR 60
           ASREQAADSNNNNKNNNNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKR
Sbjct: 35  ASREQAADSNNNNKNNNNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKR 94

Query: 61  WYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAG 120
           WYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAG
Sbjct: 95  WYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAG 154

Query: 121 FSPAS 126
           FSPAS
Sbjct: 155 FSPAS 159

[Close]
BLAST of Cucsa.280450 vs. NCBI nr
Match: gi|659074607|ref|XP_008437695.1| (PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 7.9e-61
Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 1 

Query: 1   ASREQAADSNNNNKNNNNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKR 60
           ASREQAAD+NNNN NN N+YYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKR
Sbjct: 31  ASREQAADNNNNNNNNYNDYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKR 90

Query: 61  WYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAG 120
           +YSDYDSHICEALGYLQSHLMNTRPSVALGMLLLII+SVPLSSALLLHRF HIAVALLAG
Sbjct: 91  YYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIVSVPLSSALLLHRFFHIAVALLAG 150

Query: 121 FSPAS 126
           FSPAS
Sbjct: 151 FSPAS 155

[Close]
BLAST of Cucsa.280450 vs. NCBI nr
Match: gi|1009155099|ref|XP_015895530.1| (PREDICTED: uncharacterized protein LOC107429369 [Ziziphus jujuba])

HSP 1 Score: 142.5 bits (358), Expect = 5.0e-31
Identity = 64/121 (52.89%), Postives = 97/121 (80.17%), Query Frame = 1 

Query: 1   ASREQAADSNNNNKNNNNNYYAGG-KVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEK 60
           ++R  A+   ++++ N+ NYY+   ++VDE+MIVLRKRIHE+KM E+  EPP+DW +WEK
Sbjct: 34  STRVCASSRRSSSEANDQNYYSSSSRLVDENMIVLRKRIHEMKMVERNYEPPSDWNEWEK 93

Query: 61  RWYSDYDSHICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLA 120
           ++Y+ YDS +C+ALG LQS +MNTRPS+ALGM++LI++SVP+S+ ++L R + IA  +LA
Sbjct: 94  KYYTSYDSFVCQALGVLQSQMMNTRPSLALGMMVLILLSVPMSTTMILFRLMEIANGVLA 153

[Close]
BLAST of Cucsa.280450 vs. NCBI nr
Match: gi|1021048664|gb|KZN06444.1| (hypothetical protein DCAR_007281 [Daucus carota subsp. sativus])

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-30
Identity = 63/100 (63.00%), Postives = 84/100 (84.00%), Query Frame = 1 

Query: 17  NNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYL 76
           N+  Y+G +VVDE++I+LRKRIHE+KM E+  EPPADW+DWEKR+Y+ YD++ICEA+G+L
Sbjct: 44  NSQNYSGHRVVDENLIILRKRIHEMKMIERNYEPPADWMDWEKRYYASYDTYICEAMGFL 103

Query: 77  QSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVA 117
           QS LMNTRPS+A+GM+ LI +SVP S+ALL+ RF  I  A
Sbjct: 104 QSQLMNTRPSLAIGMMALIALSVPTSTALLVSRFFDIVNA 143

[Close]
BLAST of Cucsa.280450 vs. NCBI nr
Match: gi|703099875|ref|XP_010096763.1| (hypothetical protein L484_025881 [Morus notabilis])

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 58/110 (52.73%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 9   SNNNNKNNNNNYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSH 68
           +N+++ +++N+Y +  ++VDE+MIVLRKRIHE+KM E+  EPP+DW+DWEK++Y+ YDS 
Sbjct: 48  ANHHHNHHHNHYMSSSRLVDENMIVLRKRIHEMKMVERNYEPPSDWMDWEKKYYTSYDSL 107

Query: 69  ICEALGYLQSHLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALL 119
           IC+ +G+LQS +MNTRPS+ALGM++L+I+S+P SS ++L   + +A  LL
Sbjct: 108 ICQMMGFLQSQMMNTRPSLALGMVVLVILSLPTSSVMVLFHLMGLAKELL 157

The following BLAST results are available for this feature:
BLAST of Cucsa.280450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPI5_CUCSA4.8e-65100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571480 PE=4 SV=1[more]
A0A166EE71_DAUCA7.8e-3163.00Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007281 PE=4 SV=1[more]
W9RD66_9ROSA8.6e-3052.73Uncharacterized protein OS=Morus notabilis GN=L484_025881 PE=4 SV=1[more]
I3T362_LOTJA3.3e-2953.91Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
V7BAV0_PHAVU4.3e-2960.40Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G036700g PE=4 SV=1[more]
BLAST of Cucsa.280450 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G01300.16.9e-3152.73 unknown protein[more]
AT1G15010.15.9e-3058.00 unknown protein[more]
BLAST of Cucsa.280450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465525|ref|XP_004150478.1|6.9e-65100.00PREDICTED: uncharacterized protein LOC101215395 [Cucumis sativus][more]
gi|659074607|ref|XP_008437695.1|7.9e-6194.40PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo][more]
gi|1009155099|ref|XP_015895530.1|5.0e-3152.89PREDICTED: uncharacterized protein LOC107429369 [Ziziphus jujuba][more]
gi|1021048664|gb|KZN06444.1|1.1e-3063.00hypothetical protein DCAR_007281 [Daucus carota subsp. sativus][more]
gi|703099875|ref|XP_010096763.1|1.2e-2952.73hypothetical protein L484_025881 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.280450.1Cucsa.280450.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33782FAMILY NOT NAMEDcoord: 14..124
score: 8.3
NoneNo IPR availablePANTHERPTHR33782:SF1BY GENSCAN AND GENEFINDER-RELATEDcoord: 14..124
score: 8.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.280450Cla003918Watermelon (97103) v1cgywmB512
Cucsa.280450Csa5G571480Cucumber (Chinese Long) v2cgycuB398
Cucsa.280450MELO3C005312Melon (DHL92) v3.5.1cgymeB467
Cucsa.280450ClCG01G006150Watermelon (Charleston Gray)cgywcgB484
Cucsa.280450CSPI05G19680Wild cucumber (PI 183967)cgycpiB421
Cucsa.280450CmaCh15G009500Cucurbita maxima (Rimu)cgycmaB0775
Cucsa.280450CmoCh15G009900Cucurbita moschata (Rifu)cgycmoB0771
Cucsa.280450CmoCh04G022000Cucurbita moschata (Rifu)cgycmoB0777
Cucsa.280450Lsi09G006510Bottle gourd (USVL1VR-Ls)cgylsiB452
Cucsa.280450MELO3C005312.2Melon (DHL92) v3.6.1cgymedB463
Cucsa.280450CsaV3_5G028510Cucumber (Chinese Long) v3cgycucB428
Cucsa.280450Cla97C01G006460Watermelon (97103) v2cgywmbB485
Cucsa.280450Bhi12G000775Wax gourdcgywgoB564
Cucsa.280450Carg26046Silver-seed gourdcarcgyB0495
Cucsa.280450Carg26350Silver-seed gourdcarcgyB0230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.280450Cucumber (Chinese Long) v3cgycucB430
Cucsa.280450Watermelon (97103) v2cgywmbB488
Cucsa.280450Wax gourdcgywgoB566
Cucsa.280450Cucumber (Gy14) v1cgycgyB135
Cucsa.280450Cucurbita maxima (Rimu)cgycmaB0781
Cucsa.280450Cucurbita maxima (Rimu)cgycmaB0782
Cucsa.280450Cucurbita moschata (Rifu)cgycmoB0773
Cucsa.280450Cucurbita moschata (Rifu)cgycmoB0776
Cucsa.280450Wild cucumber (PI 183967)cgycpiB422
Cucsa.280450Cucumber (Chinese Long) v2cgycuB399
Cucsa.280450Melon (DHL92) v3.5.1cgymeB468
Cucsa.280450Watermelon (Charleston Gray)cgywcgB486
Cucsa.280450Watermelon (97103) v1cgywmB511
Cucsa.280450Cucurbita pepo (Zucchini)cgycpeB0734
Cucsa.280450Cucurbita pepo (Zucchini)cgycpeB0735
Cucsa.280450Melon (DHL92) v3.6.1cgymedB464
Cucsa.280450Silver-seed gourdcarcgyB0965
Cucsa.280450Silver-seed gourdcarcgyB1165