CSPI05G19680 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G19680
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Mediator of RNA polymerase II transcription subunit 18, putative
Location	Chr5 : 20907069 .. 20907656 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGCGTCGCGAGAACAAGCAGCTGACAGCAACAATAACAATAAAAACAACAACAACAATTACTACGCAGGTGGGAAAGTAGTCGACGAGAGTATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTGTTATTCCGATTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTATTAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCCTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCGTCTTGATACCGGAACCGGACCACCACAGTTTAGTTACGTGATTGATCCGATACGCCGTCGTTTTTATATTGTAATTTTTTTTATATAAGGACTGTTTGGTCTTTGTACAGCTTACATCCCATTGTTTGTTTCGCCTTCTGTTATTTATTTAAACGGTCAAGGTTTTTTTTGTTTTTTTTTCTTTTCCATATAATACAACTTTTTTTTCCTTTC

mRNA sequence

ATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTGTTATTCCGATTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTATTAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCCTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCGTCTTGA

Coding sequence (CDS)

ATGATCGTGCTCCGGAAACGGATTCATGAGATCAAGATGGCGGAGCAGAGGCAAGAACCGCCGGCGGATTGGCTGGATTGGGAGAAACGGTGTTATTCCGATTACGATTCCCATATCTGTGAAGCTTTAGGGTATCTTCAATCTCATTTGATGAATACTCGGCCTAGTGTGGCTTTGGGAATGCTTCTGCTTATTATTATTAGCGTTCCGCTCTCCTCTGCTCTTCTTCTTCACCGATTCCTCCACATCGCCGTCGCTCTTCTCGCCGGTTTCTCTCCAGCGTCTTGA

Homology

[Close]

BLAST of CSPI05G19680 vs. TrEMBL
Match: A0A0A0KPI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571480 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKMAEQRQEPPADWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 65  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMNTRPSVALG 124

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 96
           MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS
Sbjct: 125 MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 159

[Close]

BLAST of CSPI05G19680 vs. TrEMBL
Match: A0A0L9TEB4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan609s002500 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-24
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MI LRKRIHE+ M E+  EPPADW+DWEKRCY+ YDS ICEALG LQ+ LMNTRPS+ALG
Sbjct: 18  MITLRKRIHEMNMIERNYEPPADWMDWEKRCYTKYDSMICEALGVLQTQLMNTRPSLALG 77

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPA 95
            + L+ ISVP SSA+     +  A A+LAG  P+
Sbjct: 78  AMALVAISVPTSSAVAFFHLVEFAKAVLAGVHPS 111

[Close]

BLAST of CSPI05G19680 vs. TrEMBL
Match: A0A166EE71_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007281 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-24
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           +I+LRKRIHE+KM E+  EPPADW+DWEKR Y+ YD++ICEA+G+LQS LMNTRPS+A+G
Sbjct: 58  LIILRKRIHEMKMIERNYEPPADWMDWEKRYYASYDTYICEAMGFLQSQLMNTRPSLAIG 117

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVA 87
           M+ LI +SVP S+ALL+ RF  I  A
Sbjct: 118 MMALIALSVPTSTALLVSRFFDIVNA 143

[Close]

BLAST of CSPI05G19680 vs. TrEMBL
Match: V7BAV0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G036700g PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.1e-24
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MI LRKRIHE+ M E+  EPP+DW++WEKR Y+ YDS ICEA+G LQ+HLMNTRP +ALG
Sbjct: 52  MITLRKRIHEMNMIERNYEPPSDWMEWEKRYYTKYDSIICEAVGVLQTHLMNTRPGLALG 111

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPA 95
           ++ L+ ISVP SSA+L    + +A ALLAG +P+
Sbjct: 112 VMALVAISVPTSSAMLFFHLVELAKALLAGVTPS 145

[Close]

BLAST of CSPI05G19680 vs. TrEMBL
Match: A0A0B2SDN4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_020104 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-23
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MI+LRKRIHE+ M E+  EPP+DW+DWEKR Y+ YDS ICEA+G LQS LMNTRPS+ALG
Sbjct: 56  MIILRKRIHEMNMIERNYEPPSDWMDWEKRYYNKYDSIICEAVGVLQSQLMNTRPSLALG 115

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAG 91
            + L+ ISVP SSA+LL   + +A  +LAG
Sbjct: 116 AMALVAISVPTSSAVLLFHLVELAKVVLAG 145

[Close]

BLAST of CSPI05G19680 vs. TAIR10
Match: AT2G01300.1 (AT2G01300.1 unknown protein)

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-23
Identity = 51/94 (54.26%), Postives = 71/94 (75.53%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHE+KM E+  EPP+ W+DWEKR Y+ YDS IC+++G LQS LMN+RP+VA+ 
Sbjct: 60  MIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYNSYDSVICDSVGLLQSFLMNSRPTVAIA 119

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPA 95
            LL +++SVP+SS ++  R + +   LLA  + A
Sbjct: 120 TLLFLLVSVPVSSTVIAFRLIDLLHWLLAAATSA 153

[Close]

BLAST of CSPI05G19680 vs. TAIR10
Match: AT1G15010.1 (AT1G15010.1 unknown protein)

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-22
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           M+VLRKRIHE+KM E+  EPP+ W+ WEKR Y +YD+ IC+AL  LQ+ LMN+RPSVA G
Sbjct: 49  MVVLRKRIHEMKMVERNFEPPSHWMQWEKRFYCNYDATICDALTLLQTFLMNSRPSVAFG 108

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALL 89
             LL+++SVP+SSA+   R L +A+ LL
Sbjct: 109 TCLLLLVSVPVSSAVFAFRILDLALWLL 136

[Close]

BLAST of CSPI05G19680 vs. NCBI nr
Match: gi|449465525|ref|XP_004150478.1| (PREDICTED: uncharacterized protein LOC101215395 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKMAEQRQEPPADWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 65  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMNTRPSVALG 124

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 96
           MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS
Sbjct: 125 MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 159

[Close]

BLAST of CSPI05G19680 vs. NCBI nr
Match: gi|659074607|ref|XP_008437695.1| (PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 7.4e-43
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MIVLRKRIHEIKMAEQRQEPPADWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG
Sbjct: 61  MIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALG 120

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPAS 96
           MLLLII+SVPLSSALLLHRF HIAVALLAGFSPAS
Sbjct: 121 MLLLIIVSVPLSSALLLHRFFHIAVALLAGFSPAS 155

[Close]

BLAST of CSPI05G19680 vs. NCBI nr
Match: gi|920682121|gb|KOM28893.1| (hypothetical protein LR48_Vigan609s002500 [Vigna angularis])

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-24
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MI LRKRIHE+ M E+  EPPADW+DWEKRCY+ YDS ICEALG LQ+ LMNTRPS+ALG
Sbjct: 18  MITLRKRIHEMNMIERNYEPPADWMDWEKRCYTKYDSMICEALGVLQTQLMNTRPSLALG 77

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPA 95
            + L+ ISVP SSA+     +  A A+LAG  P+
Sbjct: 78  AMALVAISVPTSSAVAFFHLVEFAKAVLAGVHPS 111

[Close]

BLAST of CSPI05G19680 vs. NCBI nr
Match: gi|1021048664|gb|KZN06444.1| (hypothetical protein DCAR_007281 [Daucus carota subsp. sativus])

HSP 1 Score: 119.0 bits (297), Expect = 4.5e-24
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           +I+LRKRIHE+KM E+  EPPADW+DWEKR Y+ YD++ICEA+G+LQS LMNTRPS+A+G
Sbjct: 58  LIILRKRIHEMKMIERNYEPPADWMDWEKRYYASYDTYICEAMGFLQSQLMNTRPSLAIG 117

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVA 87
           M+ LI +SVP S+ALL+ RF  I  A
Sbjct: 118 MMALIALSVPTSTALLVSRFFDIVNA 143

[Close]

BLAST of CSPI05G19680 vs. NCBI nr
Match: gi|951022112|ref|XP_014512844.1| (PREDICTED: uncharacterized protein LOC106771386 [Vigna radiata var. radiata])

HSP 1 Score: 118.6 bits (296), Expect = 5.9e-24
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1


Query: 1   MIVLRKRIHEIKMAEQRQEPPADWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG 60
           MI LRKRIHE+ M E+  EPP+DW+DWEKR Y+ YDS ICEALG LQ+ LMNTRPS ALG
Sbjct: 57  MITLRKRIHEMNMIERNYEPPSDWMDWEKRYYTKYDSIICEALGVLQTQLMNTRPSFALG 116

Query: 61  MLLLIIISVPLSSALLLHRFLHIAVALLAGFSPA 95
            + L+ ISVP SSA+    F+H A A+LAG  P+
Sbjct: 117 AMALVAISVPTSSAVAFFHFVHFAKAVLAGVHPS 150

The following BLAST results are available for this feature:

BLAST of CSPI05G19680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G19680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPI5_CUCSA	1.4e-43	98.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571480 PE=4 SV=1	[more]
A0A0L9TEB4_PHAAN	1.8e-24	62.77	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan609s002500 PE=4 SV=1	[more]
A0A166EE71_DAUCA	3.1e-24	65.12	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007281 PE=4 SV=1	[more]
V7BAV0_PHAVU	4.1e-24	60.64	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G036700g PE=4 SV=1	[more]
A0A0B2SDN4_GLYSO	3.5e-23	63.33	Uncharacterized protein OS=Glycine soja GN=glysoja_020104 PE=4 SV=1	[more]

BLAST of CSPI05G19680 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01300.1	3.1e-23	54.26	unknown protein	[more]
AT1G15010.1	1.2e-22	57.95	unknown protein	[more]

BLAST of CSPI05G19680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465525\|ref\|XP_004150478.1\|	1.9e-43	98.95	PREDICTED: uncharacterized protein LOC101215395 [Cucumis sativus]	[more]
gi\|659074607\|ref\|XP_008437695.1\|	7.4e-43	96.84	PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo]	[more]
gi\|920682121\|gb\|KOM28893.1\|	2.6e-24	62.77	hypothetical protein LR48_Vigan609s002500 [Vigna angularis]	[more]
gi\|1021048664\|gb\|KZN06444.1\|	4.5e-24	65.12	hypothetical protein DCAR_007281 [Daucus carota subsp. sativus]	[more]
gi\|951022112\|ref\|XP_014512844.1\|	5.9e-24	62.77	PREDICTED: uncharacterized protein LOC106771386 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G19680.1	CSPI05G19680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33782	FAMILY NOT NAMED	coord: 1..94 score: 3.8
None	No IPR available	PANTHER	PTHR33782:SF1	BY GENSCAN AND GENEFINDER-RELATED	coord: 1..94 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G19680	Cla003918	Watermelon (97103) v1	cpiwmB425
CSPI05G19680	Csa5G571480	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G19680	MELO3C005312	Melon (DHL92) v3.5.1	cpimeB342
CSPI05G19680	ClCG01G006150	Watermelon (Charleston Gray)	cpiwcgB388
CSPI05G19680	Lsi09G006510	Bottle gourd (USVL1VR-Ls)	cpilsiB329
CSPI05G19680	MELO3C005312.2	Melon (DHL92) v3.6.1	cpimedB331
CSPI05G19680	CsaV3_5G028510	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G19680	Cla97C01G006460	Watermelon (97103) v2	cpiwmbB358
CSPI05G19680	Bhi12G000775	Wax gourd	cpiwgoB453
CSPI05G19680	Cucsa.280450	Cucumber (Gy14) v1	cgycpiB421
CSPI05G19680	CmaCh15G009500	Cucurbita maxima (Rimu)	cmacpiB306
CSPI05G19680	CmoCh04G022000	Cucurbita moschata (Rifu)	cmocpiB750
CSPI05G19680	CmoCh15G009900	Cucurbita moschata (Rifu)	cmocpiB298
CSPI05G19680	Carg26350	Silver-seed gourd	carcpiB0219
CSPI05G19680	Carg26046	Silver-seed gourd	carcpiB0465

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G19680	Cucumber (Chinese Long) v3	cpicucB303
CSPI05G19680	Watermelon (97103) v2	cpiwmbB398
CSPI05G19680	Wax gourd	cpiwgoB513
CSPI05G19680	Wild cucumber (PI 183967)	cpicpiB178
CSPI05G19680	Cucumber (Gy14) v1	cgycpiB431
CSPI05G19680	Cucurbita maxima (Rimu)	cmacpiB744
CSPI05G19680	Cucurbita maxima (Rimu)	cmacpiB760
CSPI05G19680	Cucurbita moschata (Rifu)	cmocpiB409
CSPI05G19680	Cucurbita moschata (Rifu)	cmocpiB737
CSPI05G19680	Cucumber (Chinese Long) v2	cpicuB253
CSPI05G19680	Melon (DHL92) v3.5.1	cpimeB364
CSPI05G19680	Watermelon (Charleston Gray)	cpiwcgB409
CSPI05G19680	Watermelon (97103) v1	cpiwmB405
CSPI05G19680	Cucurbita pepo (Zucchini)	cpecpiB044
CSPI05G19680	Cucurbita pepo (Zucchini)	cpecpiB179
CSPI05G19680	Bottle gourd (USVL1VR-Ls)	cpilsiB369
CSPI05G19680	Melon (DHL92) v3.6.1	cpimedB356
CSPI05G19680	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G19680	Cucumber (Gy14) v2	cgybcpiB240
CSPI05G19680	Silver-seed gourd	carcpiB0883
CSPI05G19680	Silver-seed gourd	carcpiB1087