Carg26350 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26350
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mediator of RNA polymerase II transcription subunit
Location	Cucurbita_argyrosperma_scaffold_237 : 167936 .. 168418 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCAATCTCCTCCGCCAATTCCGCTCCCTTCCTCCACTTCCATCCCATCTCCTCCTCCTCCTCTCGCCGCCGCCGCCGCCGGCCACCACTCTTCACTGTAATGGCCTCATCAAGAGGAGCCGACAGCAACAGCAACAGCAACAACAATAACAACAATAACTACTATGCGAGCGGGAAGCTTGTGGACGAGAGCATGATCGTACTCCGGAAACGGATCCACGAAATCAAGATGGTCGAGCGGAGCCACGAACCCCCTTCCGATTGGCTCGACTGGGAGAAACGCTGCTACTCCGACTATGATTCACATATCTGTGAGGCTTTGGGCTATCTCCAATCCCACTTGATGAACACCAGGCCTAGCGTTGCCTTGGGAATTCTCCTTCTTATTACTCTCAGTGTTCCTCTCTCCTCCGCAGTCATTCTCCACCGCTTCATCGACATCGCCGCCGCGCTTCTCGCCGGAGTCCGTCTTACTTAA

mRNA sequence

ATGAAATCAATCTCCTCCGCCAATTCCGCTCCCTTCCTCCACTTCCATCCCATCTCCTCCTCCTCCTCTCGCCGCCGCCGCCGCCGGCCACCACTCTTCACTGTAATGGCCTCATCAAGAGGAGCCGACAGCAACAGCAACAGCAACAACAATAACAACAATAACTACTATGCGAGCGGGAAGCTTGTGGACGAGAGCATGATCGTACTCCGGAAACGGATCCACGAAATCAAGATGGTCGAGCGGAGCCACGAACCCCCTTCCGATTGGCTCGACTGGGAGAAACGCTGCTACTCCGACTATGATTCACATATCTGTGAGGCTTTGGGCTATCTCCAATCCCACTTGATGAACACCAGGCCTAGCGTTGCCTTGGGAATTCTCCTTCTTATTACTCTCAGTGTTCCTCTCTCCTCCGCAGTCATTCTCCACCGCTTCATCGACATCGCCGCCGCGCTTCTCGCCGGAGTCCGTCTTACTTAA

Coding sequence (CDS)

ATGAAATCAATCTCCTCCGCCAATTCCGCTCCCTTCCTCCACTTCCATCCCATCTCCTCCTCCTCCTCTCGCCGCCGCCGCCGCCGGCCACCACTCTTCACTGTAATGGCCTCATCAAGAGGAGCCGACAGCAACAGCAACAGCAACAACAATAACAACAATAACTACTATGCGAGCGGGAAGCTTGTGGACGAGAGCATGATCGTACTCCGGAAACGGATCCACGAAATCAAGATGGTCGAGCGGAGCCACGAACCCCCTTCCGATTGGCTCGACTGGGAGAAACGCTGCTACTCCGACTATGATTCACATATCTGTGAGGCTTTGGGCTATCTCCAATCCCACTTGATGAACACCAGGCCTAGCGTTGCCTTGGGAATTCTCCTTCTTATTACTCTCAGTGTTCCTCTCTCCTCCGCAGTCATTCTCCACCGCTTCATCGACATCGCCGCCGCGCTTCTCGCCGGAGTCCGTCTTACTTAA

Protein sequence

MKSISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASGKLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT

Homology

[Close]

BLAST of Carg26350 vs. NCBI nr
Match: XP_022939420.1 (uncharacterized protein LOC111445338 [Cucurbita moschata])

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 154/160 (96.25%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MKSISSANSAPFLHFHPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKSISSANSAPFLHFHPIS      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKSISSANSAPFLHFHPIS------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120
           XLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR
Sbjct: 61  XLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120

Query: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 161
           PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT
Sbjct: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 154

[Close]

BLAST of Carg26350 vs. NCBI nr
Match: XP_022993164.1 (uncharacterized protein LOC111489262 [Cucurbita maxima])

HSP 1 Score: 206.5 bits (524), Expect = 7.0e-50
Identity = 151/160 (94.38%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MKSISSANSAPFLHFHPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKSISSANSAPFLHFHPIS      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MKSISSANSAPFLHFHPIS----PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120
           X VDESMIVLRKRIHEIKMVE+SHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR
Sbjct: 61  XXVDESMIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120

Query: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 161
           PSV+LGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT
Sbjct: 121 PSVSLGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 156

[Close]

BLAST of Carg26350 vs. NCBI nr
Match: XP_023551441.1 (uncharacterized protein LOC111809250 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 8.8e-45
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 63  VDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPS 122
           VDESMIVLRKRIHE+KMVERSHEPPS+WLDWEKRCYSDYDSHICEALGYLQSHLMNTRPS
Sbjct: 28  VDESMIVLRKRIHEMKMVERSHEPPSNWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPS 87

Query: 123 VALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 161
           VALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT
Sbjct: 88  VALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 125

[Close]

BLAST of Carg26350 vs. NCBI nr
Match: XP_023523050.1 (uncharacterized protein LOC111787183, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 65  ESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVA 124
           ESMIVLRKRIHEIKMVERSHEPPS+WLDWEKRCYS+YDSHICEALGYLQSHLMNTRPSVA
Sbjct: 1   ESMIVLRKRIHEIKMVERSHEPPSNWLDWEKRCYSNYDSHICEALGYLQSHLMNTRPSVA 60

Query: 125 LGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 161
           LGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT
Sbjct: 61  LGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 96

[Close]

BLAST of Carg26350 vs. NCBI nr
Match: XP_022952614.1 (uncharacterized protein LOC111455246 [Cucurbita moschata])

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 80/98 (81.63%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 62  LVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRP 121
           LVDESMIVLRKRIHEIK  E++H+PP DW DWEKRCYS+YDS+ICEALGYLQSHLMNTRP
Sbjct: 60  LVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRP 119

Query: 122 SVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRL 160
           SVALG+L L+TLSVP+SSAV+LHRFI+IA  LLAG+RL
Sbjct: 120 SVALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRL 157

[Close]

BLAST of Carg26350 vs. TAIR10
Match: AT2G01300.1 (unknown protein)

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-27
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 64  DESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSV 123
           DE+MIVLRKRIHE+KMVER++EPPS W+DWEKR Y+ YDS IC+++G LQS LMN+RP+V
Sbjct: 57  DENMIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYNSYDSVICDSVGLLQSFLMNSRPTV 116

Query: 124 ALGILLLITLSVPLSSAVILHRFIDIAAALLA 156
           A+  LL + +SVP+SS VI  R ID+   LLA
Sbjct: 117 AIATLLFLLVSVPVSSTVIAFRLIDLLHWLLA 148

[Close]

BLAST of Carg26350 vs. TAIR10
Match: AT1G15010.1 (unknown protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-26
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 63  VDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPS 122
           VDE+M+VLRKRIHE+KMVER+ EPPS W+ WEKR Y +YD+ IC+AL  LQ+ LMN+RPS
Sbjct: 45  VDENMVVLRKRIHEMKMVERNFEPPSHWMQWEKRFYCNYDATICDALTLLQTFLMNSRPS 104

Query: 123 VALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRL 160
           VA G  LL+ +SVP+SSAV   R +D+A  LL  V +
Sbjct: 105 VAFGTCLLLLVSVPVSSAVFAFRILDLALWLLDAVHV 141

[Close]

BLAST of Carg26350 vs. TrEMBL
Match: tr|A0A1S3AV87|A0A1S3AV87_CUCME (uncharacterized protein LOC103483039 OS=Cucumis melo OX=3656 GN=LOC103483039 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-32
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 70  LRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGILL 129
           LRKRIHEIKM E+  EPP+DWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG+LL
Sbjct: 64  LRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVALGMLL 123

Query: 130 LITLSVPLSSAVILHRFIDIAAALLAG 157
           LI +SVPLSSA++LHRF  IA ALLAG
Sbjct: 124 LIIVSVPLSSALLLHRFFHIAVALLAG 150

[Close]

BLAST of Carg26350 vs. TrEMBL
Match: tr|A0A0A0KPI5|A0A0A0KPI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 71  RKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGILLL 130
           RKRIHEIKM E+  EPP+DWLDWEKR YSDYDSHICEALGYLQSHLMNTRPSVALG+LLL
Sbjct: 69  RKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMNTRPSVALGMLLL 128

Query: 131 ITLSVPLSSAVILHRFIDIAAALLAG 157
           I +SVPLSSA++LHRF+ IA ALLAG
Sbjct: 129 IIISVPLSSALLLHRFLHIAVALLAG 154

[Close]

BLAST of Carg26350 vs. TrEMBL
Match: tr|I3T362|I3T362_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.9e-29
Identity = 65/98 (66.33%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 62  LVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRP 121
           LVDESMI+LRKRIHE+ M+E+++E PSDW+DWEKR Y+ YDS ICEA+G LQ+ LMNTRP
Sbjct: 47  LVDESMIILRKRIHEMSMIEKNYEAPSDWMDWEKRYYTSYDSFICEAMGVLQTQLMNTRP 106

Query: 122 SVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRL 160
           SVALG + LI LSVP SSAV+LH  +++A  +LAG+ L
Sbjct: 107 SVALGAIALIALSVPTSSAVVLHHLVELANNVLAGIHL 144

[Close]

BLAST of Carg26350 vs. TrEMBL
Match: tr|A0A0R0EAH8|A0A0R0EAH8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100795681 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.9e-28
Identity = 64/98 (65.31%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 62  LVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRP 121
           LVDESMI+LRKRIHE+ M+ER++EPPSDW+DWEKR Y+ YDS ICEA+G LQS LMNTRP
Sbjct: 51  LVDESMIILRKRIHEMNMIERNYEPPSDWMDWEKRYYNKYDSIICEAVGVLQSQLMNTRP 110

Query: 122 SVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRL 160
           S+ALG + L+ +SVP SSAV+L   +++A  +LAG  L
Sbjct: 111 SLALGAMALVAISVPTSSAVLLFHLVELAKVVLAGAHL 148

[Close]

BLAST of Carg26350 vs. TrEMBL
Match: tr|A0A1J7HKL5|A0A1J7HKL5_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_18358 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.0e-28
Identity = 59/99 (59.60%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 62  LVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRP 121
           LVDESMIVLRKRIHE+ M+ER++EPPS+W+DWEK  Y+ Y+S+ICEA+G+LQ+ L+NTRP
Sbjct: 16  LVDESMIVLRKRIHEMNMIERNYEPPSEWMDWEKGYYTSYNSNICEAMGFLQTQLLNTRP 75

Query: 122 SVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 161
           S+ALG++ L+ +SVP+SSA++L  F++ + A +AG+ L+
Sbjct: 76  SLALGVMALVAISVPISSALVLFHFLEFSKAAMAGIHLS 114

The following BLAST results are available for this feature:

BLAST of Carg26350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939420.1	2.8e-51	96.25	uncharacterized protein LOC111445338 [Cucurbita moschata]	[more]
XP_022993164.1	7.0e-50	94.38	uncharacterized protein LOC111489262 [Cucurbita maxima]	[more]
XP_023551441.1	8.8e-45	97.96	uncharacterized protein LOC111809250 [Cucurbita pepo subsp. pepo]	[more]
XP_023523050.1	2.2e-43	97.92	uncharacterized protein LOC111787183, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022952614.1	1.4e-37	81.63	uncharacterized protein LOC111455246 [Cucurbita moschata]	[more]

BLAST of Carg26350 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01300.1	2.7e-27	64.13	unknown protein	[more]
AT1G15010.1	1.3e-26	60.82	unknown protein	[more]

BLAST of Carg26350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26350 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AV87\|A0A1S3AV87_CUCME	2.5e-32	83.91	uncharacterized protein LOC103483039 OS=Cucumis melo OX=3656 GN=LOC103483039 PE=...	[more]
tr\|A0A0A0KPI5\|A0A0A0KPI5_CUCSA	3.3e-32	83.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1	[more]
tr\|I3T362\|I3T362_LOTJA	5.9e-29	66.33	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
tr\|A0A0R0EAH8\|A0A0R0EAH8_SOYBN	2.9e-28	65.31	Uncharacterized protein OS=Glycine max OX=3847 GN=100795681 PE=4 SV=1	[more]
tr\|A0A1J7HKL5\|A0A1J7HKL5_LUPAN	5.0e-28	59.60	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_18358 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26350-RA	Carg26350-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..56
None	No IPR available	PANTHER	PTHR33782:SF5	BY GENSCAN AND GENEFINDER-RELATED	coord: 2..159
None	No IPR available	PANTHER	PTHR33782	FAMILY NOT NAMED	coord: 2..159

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26350	Cla003918	Watermelon (97103) v1	carwmB0181
Carg26350	Csa5G571480	Cucumber (Chinese Long) v2	carcuB0211
Carg26350	MELO3C005312	Melon (DHL92) v3.5.1	carmeB0193
Carg26350	ClCG01G006150	Watermelon (Charleston Gray)	carwcgB0183
Carg26350	CSPI05G19680	Wild cucumber (PI 183967)	carcpiB0219
Carg26350	Cucsa.280450	Cucumber (Gy14) v1	carcgyB0230
Carg26350	CmaCh15G009500	Cucurbita maxima (Rimu)	carcmaB0263
Carg26350	CmoCh04G022000	Cucurbita moschata (Rifu)	carcmoB0271
Carg26350	CmoCh15G009900	Cucurbita moschata (Rifu)	carcmoB0270
Carg26350	Lsi09G006510	Bottle gourd (USVL1VR-Ls)	carlsiB169
Carg26350	MELO3C005312.2	Melon (DHL92) v3.6.1	carmedB0197
Carg26350	CsaV3_5G028510	Cucumber (Chinese Long) v3	carcucB0217
Carg26350	Cla97C01G006460	Watermelon (97103) v2	carwmbB0195
Carg26350	Bhi12G000775	Wax gourd	carwgoB0239

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26350	Carg26046	Silver-seed gourd	carcarB229

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26350	Cucumber (Gy14) v2	carcgybB0204
Carg26350	Cucurbita maxima (Rimu)	carcmaB0264
Carg26350	Cucurbita pepo (Zucchini)	carcpeB0274