Cp4.1LG01g18200 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g18200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMediator of RNA polymerase II transcription subunit 18, putative
LocationCp4.1LG01 : 15443166 .. 15443645 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCCATAAATTCCCTCCTCTCAATCCCCTCCACCCATTCCGCTCCCGTCCTCTTCCCTCCGATCTCCCCTTCCGCCGACCGCCGCCGCCGCCGACGACCACCGGCCTTCACCGTAACTGCCTCGTCTCGACCAAAAGAACAAGCCGACAGCAACAGTTACTATGCGGATGGGAAACTAGTGGACGAGAGCATGATCGTGCTCCGGAAGCGGATCCACGAGATCAAGACCGCCGAGCAGACCCACGATCCGCCCCGCGATTGGTTCGACTGGGAGAAACGCTGCTATTCCAACTACGATTCCAACATCTGCGAGGCCCTCGGCTACCTTCAATCGCACTTAATGAACACCAGACCCAGCGTCGCCTTGGGAATGCTCGCGCTTCTTACTCTCAGCGTTCCGGTTTCCTCCGCCGTCCTTCTCCACCGCTTTATCGAAATCGCCGTTGGGCTTCTCGCCGGAATCCGTCTCTGTTAA

mRNA sequence

ATGAATTCCATAAATTCCCTCCTCTCAATCCCCTCCACCCATTCCGCTCCCGTCCTCTTCCCTCCGATCTCCCCTTCCGCCGACCGCCGCCGCCGCCGACGACCACCGGCCTTCACCGTAACTGCCTCGTCTCGACCAAAAGAACAAGCCGACAGCAACAGTTACTATGCGGATGGGAAACTAGTGGACGAGAGCATGATCGTGCTCCGGAAGCGGATCCACGAGATCAAGACCGCCGAGCAGACCCACGATCCGCCCCGCGATTGGTTCGACTGGGAGAAACGCTGCTATTCCAACTACGATTCCAACATCTGCGAGGCCCTCGGCTACCTTCAATCGCACTTAATGAACACCAGACCCAGCGTCGCCTTGGGAATGCTCGCGCTTCTTACTCTCAGCGTTCCGGTTTCCTCCGCCGTCCTTCTCCACCGCTTTATCGAAATCGCCGTTGGGCTTCTCGCCGGAATCCGTCTCTGTTAA

Coding sequence (CDS)

ATGAATTCCATAAATTCCCTCCTCTCAATCCCCTCCACCCATTCCGCTCCCGTCCTCTTCCCTCCGATCTCCCCTTCCGCCGACCGCCGCCGCCGCCGACGACCACCGGCCTTCACCGTAACTGCCTCGTCTCGACCAAAAGAACAAGCCGACAGCAACAGTTACTATGCGGATGGGAAACTAGTGGACGAGAGCATGATCGTGCTCCGGAAGCGGATCCACGAGATCAAGACCGCCGAGCAGACCCACGATCCGCCCCGCGATTGGTTCGACTGGGAGAAACGCTGCTATTCCAACTACGATTCCAACATCTGCGAGGCCCTCGGCTACCTTCAATCGCACTTAATGAACACCAGACCCAGCGTCGCCTTGGGAATGCTCGCGCTTCTTACTCTCAGCGTTCCGGTTTCCTCCGCCGTCCTTCTCCACCGCTTTATCGAAATCGCCGTTGGGCTTCTCGCCGGAATCCGTCTCTGTTAA

Protein sequence

MNSINSLLSIPSTHSAPVLFPPISPSADRRRRRRPPAFTVTASSRPKEQADSNSYYADGKLVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLALLTLSVPVSSAVLLHRFIEIAVGLLAGIRLC
Homology
[Close]
BLAST of Cp4.1LG01g18200 vs. TrEMBL
Match: A0A0A0KPI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571480 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-43
Identity = 105/162 (64.81%), Postives = 121/162 (74.69%), Query Frame = 1 

Query: 1   MNSINSLLSIPSTHSAPVLFPPISPSADRRRRRRP-PAFTVTAS------SRPKEQADSN 60
           M SINSL     + S P LF   SP+A    RR+P PA TV AS      S    + ++N
Sbjct: 1   MESINSL-----SFSTPSLF---SPAAHPHVRRKPLPAVTVRASREQAADSNNNNKNNNN 60

Query: 61  SYYADGKLVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQS 120
           +YYA GK+VDESMIVLRKRIHEIK AEQ  +PP DW DWEKR YS+YDS+ICEALGYLQS
Sbjct: 61  NYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQS 120

Query: 121 HLMNTRPSVALGMLALLTLSVPVSSAVLLHRFIEIAVGLLAG 156
           HLMNTRPSVALGML L+ +SVP+SSA+LLHRF+ IAV LLAG
Sbjct: 121 HLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAG 154

[Close]
BLAST of Cp4.1LG01g18200 vs. TrEMBL
Match: A0A0B2SDN4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_020104 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-31
Identity = 80/150 (53.33%), Postives = 103/150 (68.67%), Query Frame = 1 

Query: 9   SIPSTHSAPVLFPPISPSADRRRRRRPPAFTVTASSRPKEQADSNSYYADGKLVDESMIV 68
           SI   +S+P+LF P SPS      ++  +F  T +S  +  AD N     G+LVDESMI+
Sbjct: 3   SISLFNSSPILFHPFSPSRPCSNGKKMNSFAPTKASM-RGSADQNF---SGRLVDESMII 62

Query: 69  LRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLA 128
           LRKRIHE+   E+ ++PP DW DWEKR Y+ YDS ICEA+G LQS LMNTRPS+ALG +A
Sbjct: 63  LRKRIHEMNMIERNYEPPSDWMDWEKRYYNKYDSIICEAVGVLQSQLMNTRPSLALGAMA 122

Query: 129 LLTLSVPVSSAVLLHRFIEIAVGLLAGIRL 159
           L+ +SVP SSAVLL   +E+A  +LAG  L
Sbjct: 123 LVAISVPTSSAVLLFHLVELAKVVLAGAHL 148

[Close]
BLAST of Cp4.1LG01g18200 vs. TrEMBL
Match: A0A0R0EAH8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G125500 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-31
Identity = 80/150 (53.33%), Postives = 103/150 (68.67%), Query Frame = 1 

Query: 9   SIPSTHSAPVLFPPISPSADRRRRRRPPAFTVTASSRPKEQADSNSYYADGKLVDESMIV 68
           SI   +S+P+LF P SPS      ++  +F  T +S  +  AD N     G+LVDESMI+
Sbjct: 3   SISLFNSSPILFHPFSPSRPCSNGKKMNSFAPTKASM-RGSADQNF---SGRLVDESMII 62

Query: 69  LRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLA 128
           LRKRIHE+   E+ ++PP DW DWEKR Y+ YDS ICEA+G LQS LMNTRPS+ALG +A
Sbjct: 63  LRKRIHEMNMIERNYEPPSDWMDWEKRYYNKYDSIICEAVGVLQSQLMNTRPSLALGAMA 122

Query: 129 LLTLSVPVSSAVLLHRFIEIAVGLLAGIRL 159
           L+ +SVP SSAVLL   +E+A  +LAG  L
Sbjct: 123 LVAISVPTSSAVLLFHLVELAKVVLAGAHL 148

[Close]
BLAST of Cp4.1LG01g18200 vs. TrEMBL
Match: C6TFT5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G265100 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.4e-29
Identity = 75/150 (50.00%), Postives = 98/150 (65.33%), Query Frame = 1 

Query: 9   SIPSTHSAPVLFPPISPSADRRRRRRPPAFTVTASSRPKEQADSNSYYADGKLVDESMIV 68
           SI   +S+P+LF P SPS    + ++  +F     S  +  AD N     G+LVDE MI+
Sbjct: 3   SISLVNSSPILFHPFSPSKPCSKGKKTNSFAPIKGSM-RGSADQNF---SGRLVDEGMII 62

Query: 69  LRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLA 128
           LRKRIHE+   E+ ++PP DW DWEKR Y+ YDS ICEA+G LQ+ LMNTRPS+ALG +A
Sbjct: 63  LRKRIHEMNMIERNYEPPSDWMDWEKRYYTKYDSIICEAVGVLQTQLMNTRPSLALGAMA 122

Query: 129 LLTLSVPVSSAVLLHRFIEIAVGLLAGIRL 159
           L+ +SVP SSAVL     E+A  +LA   L
Sbjct: 123 LVAISVPTSSAVLFFHLFELAKAVLAAAHL 148

[Close]
BLAST of Cp4.1LG01g18200 vs. TrEMBL
Match: I3T362_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-28
Identity = 76/150 (50.67%), Postives = 100/150 (66.67%), Query Frame = 1 

Query: 9   SIPSTHSAPVLFPPISPSADRRRRRRPPAFTVTASSRPKEQADSNSYYADGKLVDESMIV 68
           SI    S+P+ F    P+A     R+  ++ + +S R  E          G+LVDESMI+
Sbjct: 3   SISLIKSSPIPFLSNKPAAVSSNGRKS-SYVMASSRREAENFG-------GRLVDESMII 62

Query: 69  LRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLA 128
           LRKRIHE+   E+ ++ P DW DWEKR Y++YDS ICEA+G LQ+ LMNTRPSVALG +A
Sbjct: 63  LRKRIHEMSMIEKNYEAPSDWMDWEKRYYTSYDSFICEAMGVLQTQLMNTRPSVALGAIA 122

Query: 129 LLTLSVPVSSAVLLHRFIEIAVGLLAGIRL 159
           L+ LSVP SSAV+LH  +E+A  +LAGI L
Sbjct: 123 LIALSVPTSSAVVLHHLVELANNVLAGIHL 144

[Close]
BLAST of Cp4.1LG01g18200 vs. TAIR10
Match: AT1G15010.1 (AT1G15010.1 unknown protein)

HSP 1 Score: 117.5 bits (293), Expect = 7.7e-27
Identity = 64/136 (47.06%), Postives = 84/136 (61.76%), Query Frame = 1 

Query: 23  ISPSADRRRRRRPPAFTVTASSRPKEQADSNSYYADGKLVDESMIVLRKRIHEIKTAEQT 82
           IS S  R    R      T ++R +       YY  G+ VDE+M+VLRKRIHE+K  E+ 
Sbjct: 6   ISSSTLRFHPLRTSQRIATGTNRRRTTTVCADYYRGGRTVDENMVVLRKRIHEMKMVERN 65

Query: 83  HDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLALLTLSVPVSSAVLL 142
            +PP  W  WEKR Y NYD+ IC+AL  LQ+ LMN+RPSVA G   LL +SVPVSSAV  
Sbjct: 66  FEPPSHWMQWEKRFYCNYDATICDALTLLQTFLMNSRPSVAFGTCLLLLVSVPVSSAVFA 125

Query: 143 HRFIEIAVGLLAGIRL 159
            R +++A+ LL  + +
Sbjct: 126 FRILDLALWLLDAVHV 141

[Close]
BLAST of Cp4.1LG01g18200 vs. TAIR10
Match: AT2G01300.1 (AT2G01300.1 unknown protein)

HSP 1 Score: 117.5 bits (293), Expect = 7.7e-27
Identity = 69/149 (46.31%), Postives = 95/149 (63.76%), Query Frame = 1 

Query: 6   SLLSIPSTHSAPVLFPPISPSADRRRRRRPPAFTVTASSRPKEQADSNSYYADGKLVDES 65
           +L S P + S P+ F P+  S   +R   P    +T        +  + YY  G+LVDE+
Sbjct: 4   TLFSSPPSIS-PLRFHPLVLS---QRAIIPKKKKMTMRVSAAASSGKDHYYGGGRLVDEN 63

Query: 66  MIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALG 125
           MIVLRKRIHE+K  E+ ++PP  W DWEKR Y++YDS IC+++G LQS LMN+RP+VA+ 
Sbjct: 64  MIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYNSYDSVICDSVGLLQSFLMNSRPTVAIA 123

Query: 126 MLALLTLSVPVSSAVLLHRFIEIAVGLLA 155
            L  L +SVPVSS V+  R I++   LLA
Sbjct: 124 TLLFLLVSVPVSSTVIAFRLIDLLHWLLA 148

[Close]
BLAST of Cp4.1LG01g18200 vs. NCBI nr
Match: gi|449465525|ref|XP_004150478.1| (PREDICTED: uncharacterized protein LOC101215395 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 7.2e-43
Identity = 105/162 (64.81%), Postives = 121/162 (74.69%), Query Frame = 1 

Query: 1   MNSINSLLSIPSTHSAPVLFPPISPSADRRRRRRP-PAFTVTAS------SRPKEQADSN 60
           M SINSL     + S P LF   SP+A    RR+P PA TV AS      S    + ++N
Sbjct: 1   MESINSL-----SFSTPSLF---SPAAHPHVRRKPLPAVTVRASREQAADSNNNNKNNNN 60

Query: 61  SYYADGKLVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQS 120
           +YYA GK+VDESMIVLRKRIHEIK AEQ  +PP DW DWEKR YS+YDS+ICEALGYLQS
Sbjct: 61  NYYAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQS 120

Query: 121 HLMNTRPSVALGMLALLTLSVPVSSAVLLHRFIEIAVGLLAG 156
           HLMNTRPSVALGML L+ +SVP+SSA+LLHRF+ IAV LLAG
Sbjct: 121 HLMNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLAG 154

[Close]
BLAST of Cp4.1LG01g18200 vs. NCBI nr
Match: gi|659074607|ref|XP_008437695.1| (PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 7.4e-40
Identity = 98/151 (64.90%), Postives = 113/151 (74.83%), Query Frame = 1 

Query: 17  PVLFPPISPSADRRR---RRRP-PAFTVTASSRPKEQADSNS--------YYADGKLVDE 76
           P+L  P+ P   R     RR+P PA TV AS   ++ AD+N+        YYA GK+VDE
Sbjct: 2   PLLLNPLLPLLPRPHPHGRRKPLPAVTVRASR--EQAADNNNNNNNNYNDYYAGGKVVDE 61

Query: 77  SMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVAL 136
           SMIVLRKRIHEIK AEQ  +PP DW DWEKR YS+YDS+ICEALGYLQSHLMNTRPSVAL
Sbjct: 62  SMIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHLMNTRPSVAL 121

Query: 137 GMLALLTLSVPVSSAVLLHRFIEIAVGLLAG 156
           GML L+ +SVP+SSA+LLHRF  IAV LLAG
Sbjct: 122 GMLLLIIVSVPLSSALLLHRFFHIAVALLAG 150

[Close]
BLAST of Cp4.1LG01g18200 vs. NCBI nr
Match: gi|1009155099|ref|XP_015895530.1| (PREDICTED: uncharacterized protein LOC107429369 [Ziziphus jujuba])

HSP 1 Score: 143.7 bits (361), Expect = 2.8e-31
Identity = 79/157 (50.32%), Postives = 113/157 (71.97%), Query Frame = 1 

Query: 6   SLLSIPSTHSAPVLFPPISPSADRRR--RRRPPAFTVTASSR--PKEQADSNSYYADGKL 65
           S+  +PS++  P+ F PIS S+ +    R+R  +  V ASSR    E  D N Y +  +L
Sbjct: 3   SISFLPSSN--PLSFNPISDSSGKTADFRKRASSTRVCASSRRSSSEANDQNYYSSSSRL 62

Query: 66  VDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPS 125
           VDE+MIVLRKRIHE+K  E+ ++PP DW +WEK+ Y++YDS +C+ALG LQS +MNTRPS
Sbjct: 63  VDENMIVLRKRIHEMKMVERNYEPPSDWNEWEKKYYTSYDSFVCQALGVLQSQMMNTRPS 122

Query: 126 VALGMLALLTLSVPVSSAVLLHRFIEIAVGLLAGIRL 159
           +ALGM+ L+ LSVP+S+ ++L R +EIA G+LAG+ +
Sbjct: 123 LALGMMVLILLSVPMSTTMILFRLMEIANGVLAGVHI 157

[Close]
BLAST of Cp4.1LG01g18200 vs. NCBI nr
Match: gi|356575634|ref|XP_003555943.1| (PREDICTED: uncharacterized protein LOC100795681 [Glycine max])

HSP 1 Score: 142.9 bits (359), Expect = 4.8e-31
Identity = 80/150 (53.33%), Postives = 103/150 (68.67%), Query Frame = 1 

Query: 9   SIPSTHSAPVLFPPISPSADRRRRRRPPAFTVTASSRPKEQADSNSYYADGKLVDESMIV 68
           SI   +S+P+LF P SPS      ++  +F  T +S  +  AD N     G+LVDESMI+
Sbjct: 3   SISLFNSSPILFHPFSPSRPCSNGKKMNSFAPTKASM-RGSADQNF---SGRLVDESMII 62

Query: 69  LRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLA 128
           LRKRIHE+   E+ ++PP DW DWEKR Y+ YDS ICEA+G LQS LMNTRPS+ALG +A
Sbjct: 63  LRKRIHEMNMIERNYEPPSDWMDWEKRYYNKYDSIICEAVGVLQSQLMNTRPSLALGAMA 122

Query: 129 LLTLSVPVSSAVLLHRFIEIAVGLLAGIRL 159
           L+ +SVP SSAVLL   +E+A  +LAG  L
Sbjct: 123 LVAISVPTSSAVLLFHLVELAKVVLAGAHL 148

[Close]
BLAST of Cp4.1LG01g18200 vs. NCBI nr
Match: gi|697191665|ref|XP_009604904.1| (PREDICTED: uncharacterized protein LOC104099571 [Nicotiana tomentosiformis])

HSP 1 Score: 140.2 bits (352), Expect = 3.1e-30
Identity = 71/137 (51.82%), Postives = 99/137 (72.26%), Query Frame = 1 

Query: 22  PISPSADRRRRRRPPAFTVTASSRPKEQADSNSYYADGKLVDESMIVLRKRIHEIKTAEQ 81
           PI PS    +R+     + T +   K +A   +YY +G+LVDE+MIVLRKRIHE+K  E+
Sbjct: 14  PILPSLFSPKRKSSSRVSSTKTLAMKREAHDRNYY-NGRLVDENMIVLRKRIHEMKMIER 73

Query: 82  THDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPSVALGMLALLTLSVPVSSAVL 141
            ++PP  W DWEK  Y+NYDSNICEA+G+LQS LM+TRPS+ALGM+ L+ LSVP S+A++
Sbjct: 74  NYEPPAQWMDWEKSLYANYDSNICEAMGFLQSKLMDTRPSLALGMVVLIALSVPTSTALV 133

Query: 142 LHRFIEIAVGLLAGIRL 159
           L   +E+A  +LAG+ +
Sbjct: 134 LFHLVELAKEVLAGLHI 149

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g18200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g18200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPI5_CUCSA5.0e-4364.81Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571480 PE=4 SV=1[more]
A0A0B2SDN4_GLYSO3.4e-3153.33Uncharacterized protein OS=Glycine soja GN=glysoja_020104 PE=4 SV=1[more]
A0A0R0EAH8_SOYBN3.4e-3153.33Uncharacterized protein OS=Glycine max GN=GLYMA_20G125500 PE=4 SV=1[more]
C6TFT5_SOYBN5.4e-2950.00Uncharacterized protein OS=Glycine max GN=GLYMA_10G265100 PE=2 SV=1[more]
I3T362_LOTJA1.2e-2850.67Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of Cp4.1LG01g18200 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G15010.17.7e-2747.06 unknown protein[more]
AT2G01300.17.7e-2746.31 unknown protein[more]
BLAST of Cp4.1LG01g18200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465525|ref|XP_004150478.1|7.2e-4364.81PREDICTED: uncharacterized protein LOC101215395 [Cucumis sativus][more]
gi|659074607|ref|XP_008437695.1|7.4e-4064.90PREDICTED: uncharacterized protein LOC103483039, partial [Cucumis melo][more]
gi|1009155099|ref|XP_015895530.1|2.8e-3150.32PREDICTED: uncharacterized protein LOC107429369 [Ziziphus jujuba][more]
gi|356575634|ref|XP_003555943.1|4.8e-3153.33PREDICTED: uncharacterized protein LOC100795681 [Glycine max][more]
gi|697191665|ref|XP_009604904.1|3.1e-3051.82PREDICTED: uncharacterized protein LOC104099571 [Nicotiana tomentosiformis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g18200.1Cp4.1LG01g18200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33782FAMILY NOT NAMEDcoord: 3..159
score: 3.8
NoneNo IPR availablePANTHERPTHR33782:SF1BY GENSCAN AND GENEFINDER-RELATEDcoord: 3..159
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g18200CmaCh15G009500Cucurbita maxima (Rimu)cmacpeB310
Cp4.1LG01g18200CmoCh15G009900Cucurbita moschata (Rifu)cmocpeB273
Cp4.1LG01g18200CmoCh04G022000Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g18200Cla003918Watermelon (97103) v1cpewmB440
Cp4.1LG01g18200ClCG01G006150Watermelon (Charleston Gray)cpewcgB370
Cp4.1LG01g18200Lsi09G006510Bottle gourd (USVL1VR-Ls)cpelsiB311
Cp4.1LG01g18200CsaV3_5G028510Cucumber (Chinese Long) v3cpecucB0547
Cp4.1LG01g18200Bhi12G000775Wax gourdcpewgoB0491
Cp4.1LG01g18200Carg26046Silver-seed gourdcarcpeB0600
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g18200Cucurbita maxima (Rimu)cmacpeB721