CmoCh04G008070 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G008070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGATA transcription factor, putative
LocationCmo_Chr04 : 4030807 .. 4031952 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCACCACTGCGGCGGCGGCGCCGGCGGAGCTGCCTCTTCATTTTCCGTCTTTTTGTCGGTGCCCAACCACGGTGGCGCTGCCCATGACATGATGGACATCTACTCTAATAATTATGCCTCCTCCTCCTCCTCCTCTTCTTCTTCTCCTTCATCCGTTGATTGTACTCTCTCTCTTGGTACTCCCTCTACGCGATCGTCGGAGTTCGATTCCGACAAACGCGCCGCCCCCCGCCATCACCGCCGCTCCGCTGGTTCTTATGTCTCTAACTTCTGTTGGGACTTGTTGCATCCTAAACACAAGAGTGCTGGCCGTTCCACGGCGAGTAATGCCGCCGCTGTCCCTTCCGGTGGCGATCCGCTCCTCGCTCGGCGGTGCGCTAACTGCGATACCACTTCTACTCCGCTTTGGAGAAATGGGCCGAGAGGGCCTAAGGTAAATCACGTGATTTCAAATTATGGAAATTATTTTAATTTTCTTTTTTGTTTTTTAAATGTAAATTATTTTTTAAAGTTCTAACAATTGTTTATAATAGAGATTCTATTCTGATTTTAGTAATTTGTTGGAGTTCTGGTTAAGTTACCGATGCTTATGTTATTTAGAATAATTTTATTGGTTAAAACGTTATAATTTTAATTAAAAATTACTATAAATTTGAATTAAAGAAGAATATAGATAGACTAAATTCAATGTAATTACTTTTTTATTGTAACAATAAAATTTGAATTTATTTATTTAATTGAAATGCAGTCCCTATGCAATGCGTGTGGGATTCGTTTCAAGAAGGAAGAGCGGAGGGCGGCGGCGACGGTGAACTGCACGGCTACCGCAATGGCGGCGGAATCTAACAACCACCATCACCTCCACCAACACCACCAGATGTTCAACGGAAACTACACGAATTCAACCGCTGCGTGGGTTCCACACCACTCGCCAGTGGCAACCCAGAAACTCCCGTGCCTGTCGGCGGCGGCTATTAACAACGAATCAATGTTTATAGGAAACGACGACGTTCGAAGAACCGAACAAGAAAATGGCATCTCGTATCTCTCTTGGCGCCTCAACGTTACCGATCACCGGCCCAGCCTCGTCCATGACTTCACAAGATGATCCCCCCCAGACCCAGATCAATGGAGAAGCCCT

mRNA sequence

ATGATGCACCACTGCGGCGGCGGCGCCGGCGGAGCTGCCTCTTCATTTTCCGTCTTTTTGTCGGTGCCCAACCACGGTGGCGCTGCCCATGACATGATGGACATCTACTCTAATAATTATGCCTCCTCCTCCTCCTCCTCTTCTTCTTCTCCTTCATCCGTTGATTGTACTCTCTCTCTTGGTACTCCCTCTACGCGATCGTCGGAGTTCGATTCCGACAAACGCGCCGCCCCCCGCCATCACCGCCGCTCCGCTGGTTCTTATGTCTCTAACTTCTGTTGGGACTTGTTGCATCCTAAACACAAGAGTGCTGGCCGTTCCACGGCGAGTAATGCCGCCGCTGTCCCTTCCGGTGGCGATCCGCTCCTCGCTCGGCGGTGCGCTAACTGCGATACCACTTCTACTCCGCTTTGGAGAAATGGGCCGAGAGGGCCTAAGTCCCTATGCAATGCGTGTGGGATTCGTTTCAAGAAGGAAGAGCGGAGGGCGGCGGCGACGGTGAACTGCACGGCTACCGCAATGGCGGCGGAATCTAACAACCACCATCACCTCCACCAACACCACCAGATGTTCAACGGAAACTACACGAATTCAACCGCTGCGTGGGTTCCACACCACTCGCCAGTGGCAACCCAGAAACTCCCGTGCCTGTCGGCGGCGGCTATTAACAACGAATCAATGTTTATAGGAAACGACGACGTTCGAAGAACCGAACAAGAAAATGGCATCTCGTATCTCTCTTGGCGCCTCAACGTTACCGATCACCGGCCCAGCCTCGTCCATGACTTCACAAGATGATCCCCCCCAGACCCAGATCAATGGAGAAGCCCT

Coding sequence (CDS)

ATGATGCACCACTGCGGCGGCGGCGCCGGCGGAGCTGCCTCTTCATTTTCCGTCTTTTTGTCGGTGCCCAACCACGGTGGCGCTGCCCATGACATGATGGACATCTACTCTAATAATTATGCCTCCTCCTCCTCCTCCTCTTCTTCTTCTCCTTCATCCGTTGATTGTACTCTCTCTCTTGGTACTCCCTCTACGCGATCGTCGGAGTTCGATTCCGACAAACGCGCCGCCCCCCGCCATCACCGCCGCTCCGCTGGTTCTTATGTCTCTAACTTCTGTTGGGACTTGTTGCATCCTAAACACAAGAGTGCTGGCCGTTCCACGGCGAGTAATGCCGCCGCTGTCCCTTCCGGTGGCGATCCGCTCCTCGCTCGGCGGTGCGCTAACTGCGATACCACTTCTACTCCGCTTTGGAGAAATGGGCCGAGAGGGCCTAAGTCCCTATGCAATGCGTGTGGGATTCGTTTCAAGAAGGAAGAGCGGAGGGCGGCGGCGACGGTGAACTGCACGGCTACCGCAATGGCGGCGGAATCTAACAACCACCATCACCTCCACCAACACCACCAGATGTTCAACGGAAACTACACGAATTCAACCGCTGCGTGGGTTCCACACCACTCGCCAGTGGCAACCCAGAAACTCCCGTGCCTGTCGGCGGCGGCTATTAACAACGAATCAATGTTTATAGGAAACGACGACGTTCGAAGAACCGAACAAGAAAATGGCATCTCGTATCTCTCTTGGCGCCTCAACGTTACCGATCACCGGCCCAGCCTCGTCCATGACTTCACAAGATGA
Homology
[Close]
BLAST of CmoCh04G008070 vs. Swiss-Prot
Match: GAT18_ARATH (GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 3.5e-42
Identity = 127/282 (45.04%), Postives = 155/282 (54.96%), Query Frame = 1 

Query: 13  ASSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSSSSSPSSVDCTLSLGTPSTRSSEFDS 72
           A S+S+  S+ N G        ++  N      SSS     VDCTLSLGTPSTR  E D 
Sbjct: 38  AGSYSMVFSMQNGG--------VFEQNGEDYHHSSSL----VDCTLSLGTPSTRLCEEDE 97

Query: 73  DKRAAPRHHRRSAGSYVSNFCWDLLHPKHKSAGRSTASN----AAAVPS----------- 132
            +R   R     A S +SNF WDL+H K+ ++  +  +N    +A  PS           
Sbjct: 98  KRR---RSTSSGASSCISNF-WDLIHTKNNNSKTAPYNNVPSFSANKPSRGCSGGGGGGG 157

Query: 133 ---GGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERR-AAATVNCTATA 192
              GGD LLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERR  AAT N    A
Sbjct: 158 GGGGGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAATGNTVVGA 217

Query: 193 MAAESNNHHH----LHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAINNESMFI 252
              +++ + H     + +H   N N  N T  W  HHS   TQ++PC   A   NE  F+
Sbjct: 218 APVQTDQYGHHNSGYNNYHAATNNNNNNGT-PWAHHHS---TQRVPCNYPA---NEIRFM 277

Query: 253 GN------DDVRRTEQENGISYLSWRLNVTDHRPSLVHDFTR 266
            +      ++V       G+ +LSWRLNV D R SLVHDFTR
Sbjct: 278 DDYGSGVANNVESDGAHGGVPFLSWRLNVAD-RASLVHDFTR 295

[Close]
BLAST of CmoCh04G008070 vs. Swiss-Prot
Match: GAT19_ARATH (GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 2.9e-36
Identity = 106/221 (47.96%), Postives = 125/221 (56.56%), Query Frame = 1 

Query: 45  SSSSSSPSSVDCTLSLGTPSTRSSEFDSDKRAAPRHHRRSAGSYVSNFCWDLLHPKHKSA 104
           S  SS  +SVDCTLSLGTPSTR    D ++R +  H   + G       WD L+   K  
Sbjct: 14  SHHSSPYASVDCTLSLGTPSTRLCNEDDERRFSS-HTSDTIG-------WDFLNGSKKGG 73

Query: 105 GRSTASNAAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAA 164
           G            GG  LLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA+
Sbjct: 74  G-----------GGGHNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAS 133

Query: 165 ATVNCTATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAINN 224
              N T+   +  +      HQ    +  N  N  A+  P H    TQ++P  S A  NN
Sbjct: 134 TARNSTSGGGSTAAGVPTLDHQASANYYYNNNNQYASSSPWHHQHNTQRVPYYSPA--NN 193

Query: 225 ESMFIGNDDVRRTEQE-NGISYLSWRLNVTDHRPSLVHDFT 265
           E  ++  DDVR  + +     +LSWRLNV D R  LVHDFT
Sbjct: 194 EYSYV--DDVRVVDHDVTTDPFLSWRLNVAD-RTGLVHDFT 210

[Close]
BLAST of CmoCh04G008070 vs. Swiss-Prot
Match: GAT20_ARATH (GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-24
Identity = 90/216 (41.67%), Postives = 115/216 (53.24%), Query Frame = 1 

Query: 14  SSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSSSSSPSSVDCTLSLGTPSTRSSEFDSD 73
           S+FS+F S  N     H+  D Y NN++SS+S        VDCTLSLGTPSTR  +    
Sbjct: 8   SNFSMFFSSENDDQNHHNY-DPY-NNFSSSTS--------VDCTLSLGTPSTRLDD---- 67

Query: 74  KRAAPRHHRRSAGSYVSNFCWDL-LHPKHKSAGRSTASNAAAVPSGGDPLLARRCANCDT 133
                 HHR S+ +  +N   D  +H          A  ++    G    L RRCA+CDT
Sbjct: 68  ------HHRFSSAN-SNNISGDFYIH-------GGNAKTSSYKKGGVAHSLPRRCASCDT 127

Query: 134 TSTPLWRNGPRGPKSLCNACGIRFKKEERRAAATVNCTAT---AMAAE----------SN 193
           TSTPLWRNGP+GPKSLCNACGIRFKKEERRA A  N T +   + AAE           N
Sbjct: 128 TSTPLWRNGPKGPKSLCNACGIRFKKEERRATAR-NLTISGGGSSAAEVPVENSYNGGGN 187

Query: 194 NHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLP 216
            + H H H+   + ++ +     VP+ SPV   + P
Sbjct: 188 YYSHHHHHYASSSPSWAHQNTQRVPYFSPVPEMEYP 194

[Close]
BLAST of CmoCh04G008070 vs. Swiss-Prot
Match: GAT22_ARATH (Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-11
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 1 

Query: 107 STASNAAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAT 166
           S  SN+       +  + R C++C+TT TPLWR+GPRGPKSLCNACGIR +K  R A AT
Sbjct: 181 SNLSNSERQNGYNNDCVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAT 240

Query: 167 VNCTATAMAAESNNHHHLHQHHQMFNGNY 196
              TA +  +       +   +++ NG Y
Sbjct: 241 ATATAVSGVSPPVMKKKMQNKNKISNGVY 269

[Close]
BLAST of CmoCh04G008070 vs. Swiss-Prot
Match: GAT21_ARATH (GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-09
Identity = 35/92 (38.04%), Postives = 47/92 (51.09%), Query Frame = 1 

Query: 125 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAATVNCTATAMAAESNNHHHL 184
           R C++C+TT TPLWR+GPRGPKSLCNACGIR +K  R A A          A +     L
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAAAGDQEVAVAPRVQQL 289

Query: 185 HQHHQMFNGNYTNSTAAWVPHHSPVATQKLPC 217
               ++ N    ++      H  P+  +   C
Sbjct: 290 PLKKKLQNKKKRSNGGEKYNHSPPMVAKAKKC 321

[Close]
BLAST of CmoCh04G008070 vs. TrEMBL
Match: A0A0A0KY15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046650 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 9.7e-92
Identity = 198/278 (71.22%), Postives = 214/278 (76.98%), Query Frame = 1 

Query: 1   MMHHCGGGAGGAASSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSSSSSPSSVDCTLSL 60
           MMHH GGG GG+ASSFSVFLSVPNHG A     D+YS++  ++ +SSSSSPSSVDCTLSL
Sbjct: 1   MMHHYGGGGGGSASSFSVFLSVPNHGAA-----DMYSSS--TNYASSSSSPSSVDCTLSL 60

Query: 61  GTPSTRSSEFDSDKRAAP----RHHRRSAGSYVSNFCWDLLHPKHKSAGRST----ASNA 120
           GTPSTRSSEFD DKRAA      HHRRSAGSYVSNFCWDLLHPKHK++GR      ASN 
Sbjct: 61  GTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNN 120

Query: 121 ---AAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAATVNC 180
              AAV +GGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAA    
Sbjct: 121 NINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAA--- 180

Query: 181 TATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAINNESMFI 240
           T  +  AESN+HHH H HH MFNG+YTNS   WVP   P  TQK PCLSAA        I
Sbjct: 181 TVNSSVAESNHHHH-HHHHPMFNGSYTNSNT-WVPQQLPATTQKHPCLSAA--------I 240

Query: 241 GNDDVRRTEQENGISYLSWRLNV--TDHRPSLVHDFTR 266
           GN+DV     ENGIS+LSWRLNV  TDHRP+LVHDFTR
Sbjct: 241 GNEDV---GPENGISFLSWRLNVANTDHRPTLVHDFTR 255

[Close]
BLAST of CmoCh04G008070 vs. TrEMBL
Match: A5C2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009032 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.1e-54
Identity = 145/282 (51.42%), Postives = 167/282 (59.22%), Query Frame = 1 

Query: 2   MHHCGGGAGGAA------------SSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSSSS 61
           MH C    G  A            +SFS+  S+PNH     D  D+Y          +SS
Sbjct: 76  MHRCSSSQGNMAGPCTCGLFHNQSNSFSMLFSMPNH--KPFDETDMYP--------FTSS 135

Query: 62  SPSSVDCTLSLGTPSTRSSEFDSDKRAAPRHHRRSAGSYVSNFCWDLLHPKHKSAG---- 121
           S SSVDCTLSLGTPSTR ++ D  +     HH R AGS VSNFCWD+L  KH  +     
Sbjct: 136 SSSSVDCTLSLGTPSTRLTDNDEKRM----HHDRRAGSCVSNFCWDILQXKHTPSAPTHK 195

Query: 122 --RSTASNAAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA 181
             R  +S +++  S GDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA
Sbjct: 196 PSRGGSSGSSSNNSAGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA 255

Query: 182 AATVNCTATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAIN 241
            A    T  A A      H +  HH            +WV HHS   TQK+PCLS  A+ 
Sbjct: 256 TAAA-ATTGATAGVMEPQHIMISHH----------NNSWV-HHS--QTQKMPCLS-PAMG 315

Query: 242 NESMFIGNDDVRRTEQENGISYLSWRLNVTDHRPSLVHDFTR 266
           NE  FI +DD    + + GI +LSWRLNVTD RPSLVHDFTR
Sbjct: 316 NEFRFIEDDD---RDSDTGIPFLSWRLNVTD-RPSLVHDFTR 324

[Close]
BLAST of CmoCh04G008070 vs. TrEMBL
Match: M5VSX0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014930mg PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 4.0e-53
Identity = 141/278 (50.72%), Postives = 169/278 (60.79%), Query Frame = 1 

Query: 14  SSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSS-------SSSPSSVDCTLSLGTPSTR 73
           SSFS+  S+PNH    H   D + +++  +           +SS SSVDCTLSLGTPSTR
Sbjct: 28  SSFSMLFSMPNH----HKPYDHHHHHHHETQHDHHNHMYPFASSSSSVDCTLSLGTPSTR 87

Query: 74  SSEFD---SDKRAAPRHHRRSAGSYVSNFCWDLLHPKHKSAGRSTASN------------ 133
            +E D    DKR   R+ RRS    VSNFCWDLL PKH +   +++ +            
Sbjct: 88  LTENDVVLDDKRT--RNERRS----VSNFCWDLLQPKHHATSATSSHHHKNGSHRSGGNG 147

Query: 134 ---AAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA-AATV 193
              + AV S  DPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA AA  
Sbjct: 148 NGVSNAVHSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAAA 207

Query: 194 NCTATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAINNESM 253
           N  ++++    +N H L QHH      + NS   W+PH     TQK+PC S  A+ NE  
Sbjct: 208 NGGSSSVVGMDHNSHMLSQHH------HNNS---WMPHSQ---TQKMPCFS-PAMGNEFR 267

Query: 254 FIGNDDVRRTEQENGISYLSWRLNVTDHRPSLVHDFTR 266
           F+ +D         GI +LSWRLNVTD RPSLVHDFTR
Sbjct: 268 FMEDDTAHHENDATGIPFLSWRLNVTD-RPSLVHDFTR 281

[Close]
BLAST of CmoCh04G008070 vs. TrEMBL
Match: A0A061DFR9_THECC (GATA type zinc finger transcription factor family protein OS=Theobroma cacao GN=TCM_000376 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.7e-51
Identity = 144/284 (50.70%), Postives = 167/284 (58.80%), Query Frame = 1 

Query: 1   MMHHCGGGAGGA------------ASSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSSS 60
           MMH C    G              ++SFS+  S+PN    + D  D+Y+  Y SSSSSSS
Sbjct: 1   MMHRCSSSQGNMVGPCSCGLFHNQSNSFSMLFSMPNPH-KSFDETDMYA--YTSSSSSSS 60

Query: 61  SSPSSVDCTLSLGTPSTRSSEFDSDKRAAPRHHRRSAGSYVSNFCWDLLHPKHK------ 120
                VDCTLSLGTPSTR  E D DKR   RH RRS GS +SNFCWDLL  K+       
Sbjct: 61  -----VDCTLSLGTPSTRLCE-DDDKRI--RHDRRS-GSCMSNFCWDLLQNKNAPYSQQT 120

Query: 121 -SAGRSTASNAAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 180
             A R ++ N+++  SG DPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER
Sbjct: 121 PKASRGSSGNSSS-SSGNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 180

Query: 181 RAAATVNCTATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAA 240
           RA A  N +    +     HH  H +             +WV HHS    QK+PC S   
Sbjct: 181 RATANANNSGATASMLEQQHHGYHNN-------------SWV-HHS--QNQKMPCFSPV- 240

Query: 241 INNESMFIGNDDVRRTEQENGISYLSWRLNVTDHRPSLVHDFTR 266
             NE  FI + D    + + GI +LSWRLNVTD   SLVHDFTR
Sbjct: 241 --NEFRFIEDTD---RDSDTGIPFLSWRLNVTDRPTSLVHDFTR 249

[Close]
BLAST of CmoCh04G008070 vs. TrEMBL
Match: V4RVT5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026328mg PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 4.1e-50
Identity = 146/293 (49.83%), Postives = 169/293 (57.68%), Query Frame = 1 

Query: 1   MMHHCGGGAGGA---------------ASSFSVFLSVPNHGGAAHDMMDIYSNNYASSSS 60
           MMH C    G                 ++SFS+  S+PNH   ++D  D+Y+        
Sbjct: 1   MMHRCSSSHGNMVGSSCSCSSGLYPSQSNSFSMLFSMPNH--KSYDETDMYA-------- 60

Query: 61  SSSSSPSSVDCTLSLGTPSTRSSEFDSDKRAAPRH-HRRSAGSYVSNFCWDLLHPK---- 120
               SPSSVDCTLSLGTPSTR SE D +KR   RH  RRSA + +++FCWD LH K    
Sbjct: 61  --FMSPSSVDCTLSLGTPSTRLSE-DDEKRI--RHDQRRSASNCMTDFCWDFLHTKNSPY 120

Query: 121 ------HK-SAGRSTASNAAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACG 180
                 HK S G + +SN  +  SG DPLLARRCANCDTTSTPLWRNGPRGPKSLCNACG
Sbjct: 121 NTAQQNHKTSRGGNNSSNTISSSSGNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACG 180

Query: 181 IRFKKEERRA-AATVNCTATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQ 240
           IRFKKEERRA AA  N +  A AAE        Q H    G Y NS   WV       +Q
Sbjct: 181 IRFKKEERRATAANANSSNIASAAE--------QPH----GYYNNS---WV-QVQQAQSQ 240

Query: 241 KLPCLSAAAINNESMFIGNDDVRRTEQENGISYLSWRLNVTDHRPSLVHDFTR 266
           K+PC S A   NE  FI + D      + G+ +LSWRLNV D RP LVHDFTR
Sbjct: 241 KMPCFSPA---NEFRFIEDSD---QTSDTGVPFLSWRLNVAD-RPGLVHDFTR 255

[Close]
BLAST of CmoCh04G008070 vs. TAIR10
Match: AT3G50870.1 (AT3G50870.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 173.3 bits (438), Expect = 2.0e-43
Identity = 127/282 (45.04%), Postives = 155/282 (54.96%), Query Frame = 1 

Query: 13  ASSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSSSSSPSSVDCTLSLGTPSTRSSEFDS 72
           A S+S+  S+ N G        ++  N      SSS     VDCTLSLGTPSTR  E D 
Sbjct: 38  AGSYSMVFSMQNGG--------VFEQNGEDYHHSSSL----VDCTLSLGTPSTRLCEEDE 97

Query: 73  DKRAAPRHHRRSAGSYVSNFCWDLLHPKHKSAGRSTASN----AAAVPS----------- 132
            +R   R     A S +SNF WDL+H K+ ++  +  +N    +A  PS           
Sbjct: 98  KRR---RSTSSGASSCISNF-WDLIHTKNNNSKTAPYNNVPSFSANKPSRGCSGGGGGGG 157

Query: 133 ---GGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERR-AAATVNCTATA 192
              GGD LLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERR  AAT N    A
Sbjct: 158 GGGGGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAATGNTVVGA 217

Query: 193 MAAESNNHHH----LHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAINNESMFI 252
              +++ + H     + +H   N N  N T  W  HHS   TQ++PC   A   NE  F+
Sbjct: 218 APVQTDQYGHHNSGYNNYHAATNNNNNNGT-PWAHHHS---TQRVPCNYPA---NEIRFM 277

Query: 253 GN------DDVRRTEQENGISYLSWRLNVTDHRPSLVHDFTR 266
            +      ++V       G+ +LSWRLNV D R SLVHDFTR
Sbjct: 278 DDYGSGVANNVESDGAHGGVPFLSWRLNVAD-RASLVHDFTR 295

[Close]
BLAST of CmoCh04G008070 vs. TAIR10
Match: AT4G36620.1 (AT4G36620.1 GATA transcription factor 19)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-37
Identity = 106/221 (47.96%), Postives = 125/221 (56.56%), Query Frame = 1 

Query: 45  SSSSSSPSSVDCTLSLGTPSTRSSEFDSDKRAAPRHHRRSAGSYVSNFCWDLLHPKHKSA 104
           S  SS  +SVDCTLSLGTPSTR    D ++R +  H   + G       WD L+   K  
Sbjct: 14  SHHSSPYASVDCTLSLGTPSTRLCNEDDERRFSS-HTSDTIG-------WDFLNGSKKGG 73

Query: 105 GRSTASNAAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAA 164
           G            GG  LLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA+
Sbjct: 74  G-----------GGGHNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAS 133

Query: 165 ATVNCTATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAINN 224
              N T+   +  +      HQ    +  N  N  A+  P H    TQ++P  S A  NN
Sbjct: 134 TARNSTSGGGSTAAGVPTLDHQASANYYYNNNNQYASSSPWHHQHNTQRVPYYSPA--NN 193

Query: 225 ESMFIGNDDVRRTEQE-NGISYLSWRLNVTDHRPSLVHDFT 265
           E  ++  DDVR  + +     +LSWRLNV D R  LVHDFT
Sbjct: 194 EYSYV--DDVRVVDHDVTTDPFLSWRLNVAD-RTGLVHDFT 210

[Close]
BLAST of CmoCh04G008070 vs. TAIR10
Match: AT2G18380.1 (AT2G18380.1 GATA transcription factor 20)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 90/216 (41.67%), Postives = 115/216 (53.24%), Query Frame = 1 

Query: 14  SSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSSSSSPSSVDCTLSLGTPSTRSSEFDSD 73
           S+FS+F S  N     H+  D Y NN++SS+S        VDCTLSLGTPSTR  +    
Sbjct: 8   SNFSMFFSSENDDQNHHNY-DPY-NNFSSSTS--------VDCTLSLGTPSTRLDD---- 67

Query: 74  KRAAPRHHRRSAGSYVSNFCWDL-LHPKHKSAGRSTASNAAAVPSGGDPLLARRCANCDT 133
                 HHR S+ +  +N   D  +H          A  ++    G    L RRCA+CDT
Sbjct: 68  ------HHRFSSAN-SNNISGDFYIH-------GGNAKTSSYKKGGVAHSLPRRCASCDT 127

Query: 134 TSTPLWRNGPRGPKSLCNACGIRFKKEERRAAATVNCTAT---AMAAE----------SN 193
           TSTPLWRNGP+GPKSLCNACGIRFKKEERRA A  N T +   + AAE           N
Sbjct: 128 TSTPLWRNGPKGPKSLCNACGIRFKKEERRATAR-NLTISGGGSSAAEVPVENSYNGGGN 187

Query: 194 NHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLP 216
            + H H H+   + ++ +     VP+ SPV   + P
Sbjct: 188 YYSHHHHHYASSSPSWAHQNTQRVPYFSPVPEMEYP 194

[Close]
BLAST of CmoCh04G008070 vs. TAIR10
Match: AT4G26150.1 (AT4G26150.1 cytokinin-responsive gata factor 1)

HSP 1 Score: 72.0 bits (175), Expect = 6.2e-13
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 1 

Query: 107 STASNAAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAT 166
           S  SN+       +  + R C++C+TT TPLWR+GPRGPKSLCNACGIR +K  R A AT
Sbjct: 181 SNLSNSERQNGYNNDCVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAT 240

Query: 167 VNCTATAMAAESNNHHHLHQHHQMFNGNY 196
              TA +  +       +   +++ NG Y
Sbjct: 241 ATATAVSGVSPPVMKKKMQNKNKISNGVY 269

[Close]
BLAST of CmoCh04G008070 vs. TAIR10
Match: AT4G16141.1 (AT4G16141.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 64.7 bits (156), Expect = 9.8e-11
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1 

Query: 100 KHKSAGRSTA---SNAAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRF 159
           K +SAG S+     N ++  SGGD    + C +C T+ TPLWR GP GPKSLCNACGI+ 
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSGGDT--KKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKS 70

Query: 160 KKEERRAAATVNCTATAMAAESNNH 182
           +K +R+AA  +      + ++SNN+
Sbjct: 71  RK-KRQAALGIRQDDIKIKSKSNNN 92

[Close]
BLAST of CmoCh04G008070 vs. NCBI nr
Match: gi|778690730|ref|XP_004146553.2| (PREDICTED: GATA transcription factor 18-like [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 1.4e-91
Identity = 198/278 (71.22%), Postives = 214/278 (76.98%), Query Frame = 1 

Query: 1   MMHHCGGGAGGAASSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSSSSSPSSVDCTLSL 60
           MMHH GGG GG+ASSFSVFLSVPNHG A     D+YS++  ++ +SSSSSPSSVDCTLSL
Sbjct: 1   MMHHYGGGGGGSASSFSVFLSVPNHGAA-----DMYSSS--TNYASSSSSPSSVDCTLSL 60

Query: 61  GTPSTRSSEFDSDKRAAP----RHHRRSAGSYVSNFCWDLLHPKHKSAGRST----ASNA 120
           GTPSTRSSEFD DKRAA      HHRRSAGSYVSNFCWDLLHPKHK++GR      ASN 
Sbjct: 61  GTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNN 120

Query: 121 ---AAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAATVNC 180
              AAV +GGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAA    
Sbjct: 121 NINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAA--- 180

Query: 181 TATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAINNESMFI 240
           T  +  AESN+HHH H HH MFNG+YTNS   WVP   P  TQK PCLSAA        I
Sbjct: 181 TVNSSVAESNHHHH-HHHHPMFNGSYTNSNT-WVPQQLPATTQKHPCLSAA--------I 240

Query: 241 GNDDVRRTEQENGISYLSWRLNV--TDHRPSLVHDFTR 266
           GN+DV     ENGIS+LSWRLNV  TDHRP+LVHDFTR
Sbjct: 241 GNEDV---GPENGISFLSWRLNVANTDHRPTLVHDFTR 255

[Close]
BLAST of CmoCh04G008070 vs. NCBI nr
Match: gi|659102361|ref|XP_008452087.1| (PREDICTED: GATA transcription factor 18-like [Cucumis melo])

HSP 1 Score: 344.7 bits (883), Expect = 1.4e-91
Identity = 202/279 (72.40%), Postives = 215/279 (77.06%), Query Frame = 1 

Query: 1   MMHHCGGGAGGA---ASSFSVFLSVPNHGGAAHDMMDIYSN--NYASSSSSSSSSPSSVD 60
           MMHH GGG GG    ASSFS+FLSVPNHG A     D+YS+  NYASSSSSSSSSPSSVD
Sbjct: 1   MMHHYGGGGGGGGGGASSFSLFLSVPNHGAA-----DMYSSSTNYASSSSSSSSSPSSVD 60

Query: 61  CTLSLGTPSTRSSEFDSDKRAAPRH-HRRSAGSYVSNFCWDLLHPKHKSAGRST---ASN 120
           CTLSLGTPSTRSSEFDSDKRAA R+ HRRSAGSYVSNFCWDLLHPKHK++GR     ASN
Sbjct: 61  CTLSLGTPSTRSSEFDSDKRAAARNPHRRSAGSYVSNFCWDLLHPKHKTSGRGAGGAASN 120

Query: 121 ---AAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAATVN 180
               AAV + GDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAA   
Sbjct: 121 NNITAAVSNSGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAA-- 180

Query: 181 CTATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAINNESMF 240
            T  +  AESN+HHH      MFNG+YTNS+  WVP   P  TQK PCLSAA        
Sbjct: 181 -TVNSSTAESNHHHH-----SMFNGSYTNSST-WVPQQLPATTQKHPCLSAA-------- 240

Query: 241 IGNDDVRRTEQENGISYLSWRLNV--TDHRPSLVHDFTR 266
           IGNDDV     ENGIS+LSWRLNV  TDHRP+LVHDFTR
Sbjct: 241 IGNDDV---GPENGISFLSWRLNVANTDHRPTLVHDFTR 254

[Close]
BLAST of CmoCh04G008070 vs. NCBI nr
Match: gi|147792212|emb|CAN72981.1| (hypothetical protein VITISV_009032 [Vitis vinifera])

HSP 1 Score: 220.7 bits (561), Expect = 3.0e-54
Identity = 145/282 (51.42%), Postives = 167/282 (59.22%), Query Frame = 1 

Query: 2   MHHCGGGAGGAA------------SSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSSSS 61
           MH C    G  A            +SFS+  S+PNH     D  D+Y          +SS
Sbjct: 76  MHRCSSSQGNMAGPCTCGLFHNQSNSFSMLFSMPNH--KPFDETDMYP--------FTSS 135

Query: 62  SPSSVDCTLSLGTPSTRSSEFDSDKRAAPRHHRRSAGSYVSNFCWDLLHPKHKSAG---- 121
           S SSVDCTLSLGTPSTR ++ D  +     HH R AGS VSNFCWD+L  KH  +     
Sbjct: 136 SSSSVDCTLSLGTPSTRLTDNDEKRM----HHDRRAGSCVSNFCWDILQXKHTPSAPTHK 195

Query: 122 --RSTASNAAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA 181
             R  +S +++  S GDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA
Sbjct: 196 PSRGGSSGSSSNNSAGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA 255

Query: 182 AATVNCTATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAIN 241
            A    T  A A      H +  HH            +WV HHS   TQK+PCLS  A+ 
Sbjct: 256 TAAA-ATTGATAGVMEPQHIMISHH----------NNSWV-HHS--QTQKMPCLS-PAMG 315

Query: 242 NESMFIGNDDVRRTEQENGISYLSWRLNVTDHRPSLVHDFTR 266
           NE  FI +DD    + + GI +LSWRLNVTD RPSLVHDFTR
Sbjct: 316 NEFRFIEDDD---RDSDTGIPFLSWRLNVTD-RPSLVHDFTR 324

[Close]
BLAST of CmoCh04G008070 vs. NCBI nr
Match: gi|731387122|ref|XP_010649139.1| (PREDICTED: GATA transcription factor 18-like [Vitis vinifera])

HSP 1 Score: 220.7 bits (561), Expect = 3.0e-54
Identity = 145/282 (51.42%), Postives = 167/282 (59.22%), Query Frame = 1 

Query: 2   MHHCGGGAGGAA------------SSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSSSS 61
           MH C    G  A            +SFS+  S+PNH     D  D+Y          +SS
Sbjct: 1   MHRCSSSQGNMAGPCTCGLFHNQSNSFSMLFSMPNH--KPFDETDMYP--------FTSS 60

Query: 62  SPSSVDCTLSLGTPSTRSSEFDSDKRAAPRHHRRSAGSYVSNFCWDLLHPKHKSAG---- 121
           S SSVDCTLSLGTPSTR ++ D  +     HH R AGS VSNFCWD+L  KH  +     
Sbjct: 61  SSSSVDCTLSLGTPSTRLTDNDEKRM----HHDRRAGSCVSNFCWDILQSKHTPSAPTHK 120

Query: 122 --RSTASNAAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA 181
             R  +S +++  S GDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA
Sbjct: 121 PSRGGSSGSSSNNSAGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA 180

Query: 182 AATVNCTATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAIN 241
            A    T  A A      H +  HH            +WV HHS   TQK+PCLS  A+ 
Sbjct: 181 TAAA-ATTGATAGVMEPQHIMISHH----------NNSWV-HHS--QTQKMPCLS-PAMG 240

Query: 242 NESMFIGNDDVRRTEQENGISYLSWRLNVTDHRPSLVHDFTR 266
           NE  FI +DD    + + GI +LSWRLNVTD RPSLVHDFTR
Sbjct: 241 NEFRFIEDDD---RDSDTGIPFLSWRLNVTD-RPSLVHDFTR 249

[Close]
BLAST of CmoCh04G008070 vs. NCBI nr
Match: gi|645273031|ref|XP_008241682.1| (PREDICTED: GATA transcription factor 19-like [Prunus mume])

HSP 1 Score: 216.9 bits (551), Expect = 4.4e-53
Identity = 141/278 (50.72%), Postives = 169/278 (60.79%), Query Frame = 1 

Query: 14  SSFSVFLSVPNHGGAAHDMMDIYSNNYASSSSSS-------SSSPSSVDCTLSLGTPSTR 73
           SSFS+  S+PNH    H   D + +++  +           +SS SSVDCTLSLGTPSTR
Sbjct: 28  SSFSMLFSMPNH----HRPYDHHHHHHHETQHDHHNHMYPFASSSSSVDCTLSLGTPSTR 87

Query: 74  SSEFD---SDKRAAPRHHRRSAGSYVSNFCWDLLHPKHKSAGRSTASN------------ 133
            +E D    DKR   R+ RRS    VSNFCWDLL PKH +   +++ +            
Sbjct: 88  LTENDVVLDDKRT--RNERRS----VSNFCWDLLQPKHHATSATSSHHHKNGSHRSGGNG 147

Query: 134 ---AAAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA-AATV 193
              + AV S  DPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRA AA  
Sbjct: 148 NGVSNAVHSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAAA 207

Query: 194 NCTATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAINNESM 253
           N  ++++    +N H L QHH      + NS   W+PH     TQK+PC S  A+ NE  
Sbjct: 208 NGASSSVVGMEHNSHMLSQHH------HNNS---WMPHSQ---TQKMPCFS-PAMGNEFR 267

Query: 254 FIGNDDVRRTEQENGISYLSWRLNVTDHRPSLVHDFTR 266
           F+ +D         GI +LSWRLNVTD RPSLVHDFTR
Sbjct: 268 FMEDDTAHHENDATGIPFLSWRLNVTD-RPSLVHDFTR 281

The following BLAST results are available for this feature:
BLAST of CmoCh04G008070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GAT18_ARATH3.5e-4245.04GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2[more]
GAT19_ARATH2.9e-3647.96GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2[more]
GAT20_ARATH1.9e-2441.67GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2 SV=2[more]
GAT22_ARATH1.1e-1142.70Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=3 SV=... [more]
GAT21_ARATH2.3e-0938.04GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2[more]
BLAST of CmoCh04G008070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY15_CUCSA9.7e-9271.22Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046650 PE=4 SV=1[more]
A5C2I6_VITVI2.1e-5451.42Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009032 PE=4 SV=1[more]
M5VSX0_PRUPE4.0e-5350.72Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014930mg PE=4 SV=1[more]
A0A061DFR9_THECC1.7e-5150.70GATA type zinc finger transcription factor family protein OS=Theobroma cacao GN=... [more]
V4RVT5_9ROSI4.1e-5049.83Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026328mg PE=4 SV=1[more]
BLAST of CmoCh04G008070 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50870.12.0e-4345.04 GATA type zinc finger transcription factor family protein[more]
AT4G36620.11.6e-3747.96 GATA transcription factor 19[more]
AT2G18380.11.1e-2541.67 GATA transcription factor 20[more]
AT4G26150.16.2e-1342.70 cytokinin-responsive gata factor 1[more]
AT4G16141.19.8e-1144.71 GATA type zinc finger transcription factor family protein[more]
BLAST of CmoCh04G008070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778690730|ref|XP_004146553.2|1.4e-9171.22PREDICTED: GATA transcription factor 18-like [Cucumis sativus][more]
gi|659102361|ref|XP_008452087.1|1.4e-9172.40PREDICTED: GATA transcription factor 18-like [Cucumis melo][more]
gi|147792212|emb|CAN72981.1|3.0e-5451.42hypothetical protein VITISV_009032 [Vitis vinifera][more]
gi|731387122|ref|XP_010649139.1|3.0e-5451.42PREDICTED: GATA transcription factor 18-like [Vitis vinifera][more]
gi|645273031|ref|XP_008241682.1|4.4e-5350.72PREDICTED: GATA transcription factor 19-like [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G008070.1CmoCh04G008070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 127..161
score: 6.2
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 121..173
score: 8.5
IPR000679Zinc finger, GATA-typePROSITEPS00344GATA_ZN_FINGER_1coord: 127..152
scor
IPR000679Zinc finger, GATA-typePROFILEPS50114GATA_ZN_FINGER_2coord: 121..157
score: 1
IPR013088Zinc finger, NHR/GATA-typeGENE3DG3DSA:3.30.50.10coord: 125..161
score: 5.3
NoneNo IPR availablePANTHERPTHR10071TRANSCRIPTION FACTOR GATA GATA BINDING FACTORcoord: 13..166
score: 2.0
NoneNo IPR availablePANTHERPTHR10071:SF156GATA TRANSCRIPTION FACTOR 18-RELATEDcoord: 13..166
score: 2.0
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 124..161
score: 5.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G008070Cucsa.106490Cucumber (Gy14) v1cgycmoB0245
CmoCh04G008070CmaCh04G007570Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G008070Cla014213Watermelon (97103) v1cmowmB711
CmoCh04G008070Cla014581Watermelon (97103) v1cmowmB671
CmoCh04G008070Csa4G046650Cucumber (Chinese Long) v2cmocuB705
CmoCh04G008070MELO3C016391Melon (DHL92) v3.5.1cmomeB686
CmoCh04G008070MELO3C007831Melon (DHL92) v3.5.1cmomeB702
CmoCh04G008070ClCG01G019610Watermelon (Charleston Gray)cmowcgB641
CmoCh04G008070ClCG07G008580Watermelon (Charleston Gray)cmowcgB670
CmoCh04G008070CSPI06G31020Wild cucumber (PI 183967)cmocpiB775
CmoCh04G008070CSPI04G05430Wild cucumber (PI 183967)cmocpiB715
CmoCh04G008070Lsi07G002510Bottle gourd (USVL1VR-Ls)cmolsiB692
CmoCh04G008070Cp4.1LG10g00610Cucurbita pepo (Zucchini)cmocpeB655
CmoCh04G008070Cp4.1LG01g07010Cucurbita pepo (Zucchini)cmocpeB684
CmoCh04G008070MELO3C016391.2Melon (DHL92) v3.6.1cmomedB779
CmoCh04G008070CsaV3_4G005580Cucumber (Chinese Long) v3cmocucB0833
CmoCh04G008070Cla97C01G018990Watermelon (97103) v2cmowmbB682
CmoCh04G008070Cla97C07G135600Watermelon (97103) v2cmowmbB748
CmoCh04G008070Bhi01G001824Wax gourdcmowgoB0853
CmoCh04G008070CsGy4G005320Cucumber (Gy14) v2cgybcmoB521
CmoCh04G008070Carg14155Silver-seed gourdcarcmoB1259
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G008070CmoCh03G007750Cucurbita moschata (Rifu)cmocmoB451
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G008070Wax gourdcmowgoB0843
CmoCh04G008070Cucurbita moschata (Rifu)cmocmoB285
CmoCh04G008070Cucurbita maxima (Rimu)cmacmoB337
CmoCh04G008070Cucurbita pepo (Zucchini)cmocpeB667
CmoCh04G008070Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G008070Bottle gourd (USVL1VR-Ls)cmolsiB632
CmoCh04G008070Melon (DHL92) v3.6.1cmomedB797
CmoCh04G008070Silver-seed gourdcarcmoB1371