CmoCh04G002670 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G002670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L10
Location	Cmo_Chr04 : 1342812 .. 1343516 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGGGGGCAGTAA

mRNA sequence

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGGGGGCAGTAA

Coding sequence (CDS)

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGGGGGCAGTAA

Homology

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BLAST of CmoCh04G002670 vs. Swiss-Prot
Match: RK10_TOBAC (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.7e-83
Identity = 156/229 (68.12%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEA+  + PS  T  S      +   N L+     H   + ++   L +  AISRTKKEE
Sbjct: 1   MEATFFTLPS-STSHSYPFSLKSHFNNSLTLPTHPHFKPKSKN---LTIRSAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK+QL+ CYLLAGI YKG TVKQFQELR  LP+T+KL+VAKNTLVLKAIEGT WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFVHSEEIPAA+KPYR FQKEKKLE+NDFTGAVFEGK+YGP++FK LET
Sbjct: 121 LKPCMKGMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGG 230
           +P+RAE+YA++LG LKGPAS++VGT+QAPAR+++MVLKAYV+KLEE+GG
Sbjct: 181 LPTRAEIYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

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BLAST of CmoCh04G002670 vs. Swiss-Prot
Match: RK10_ARATH (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.3e-76
Identity = 144/227 (63.44%), Postives = 175/227 (77.09%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           ME +LLSF S  +P   Q ++   P           ++N   + R   +  A+SR KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTPK----------TSNSPNYPRLPVIRSAVSRNKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVE VK  L+ C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L+ PA +LV TLQAPAR+V+MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

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BLAST of CmoCh04G002670 vs. Swiss-Prot
Match: RL10_THESQ (50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) GN=rplJ PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 1


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  VE + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEKKSE 179

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BLAST of CmoCh04G002670 vs. Swiss-Prot
Match: RL10_THEP1 (50S ribosomal protein L10 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplJ PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 1


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  VE + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEKKSE 179

[Close]

BLAST of CmoCh04G002670 vs. Swiss-Prot
Match: RL10_THEMA (50S ribosomal protein L10 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rplJ PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 5.8e-17
Identity = 54/178 (30.34%), Postives = 92/178 (51.69%), Query Frame = 1


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  V+ + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKKSE 179

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BLAST of CmoCh04G002670 vs. TrEMBL
Match: A0A0A0KLL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G176000 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 2.0e-112
Identity = 210/234 (89.74%), Postives = 221/234 (94.44%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKV+ AISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+W
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FK L
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           ETMPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 234

[Close]

BLAST of CmoCh04G002670 vs. TrEMBL
Match: A0A067LF88_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15458 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.8e-90
Identity = 177/231 (76.62%), Postives = 192/231 (83.12%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFS-PLRHSTNQGRHYRCLKVAGAISRTKKE 60
           ME +L SFPS K PS SQ L   R TNP SFS PL   T+    YR + +  AISRTKKE
Sbjct: 30  METTLFSFPSSK-PSPSQTLIQFRSTNPFSFSKPLHKPTS----YRPISINSAISRTKKE 89

Query: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWE 120
           ETVETVK QL+ CYLLA IKY GFTVKQFQELRRSLPE+SKLIVAKNTLV KAIEGT WE
Sbjct: 90  ETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEGTQWE 149

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180
           ALKPCMKGMN WLFVH+EEIP AIKPYR+FQKEKKLEDNDFTGAVFEGK+YGP DFK LE
Sbjct: 150 ALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDFKQLE 209

Query: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGG 231
           TMPSRAE+YAKMLG L+ PA  LV TLQAPARDV+MVLKAYV+KLE++ GG
Sbjct: 210 TMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDESGG 255

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BLAST of CmoCh04G002670 vs. TrEMBL
Match: M5VZQ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010824mg PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.7e-87
Identity = 170/239 (71.13%), Postives = 192/239 (80.33%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILT-----LNRPTNP---LSFSPLRHSTNQGRHYRCLKVAGA 60
           MEA+L SFPS K PS S   T     L RPTNP   L+  P RH      H+R   +  A
Sbjct: 1   MEATLFSFPSSKPPSPSLTQTQSKTLLTRPTNPFLSLTPRPTRH------HHRLPTIRSA 60

Query: 61  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKA 120
           ISRTKKE+TVET+KE L+ C+LLAGIKYKG TVKQFQ+LR+ LPET+KLIVAKNTLV KA
Sbjct: 61  ISRTKKEQTVETIKENLENCHLLAGIKYKGLTVKQFQDLRKVLPETTKLIVAKNTLVYKA 120

Query: 121 IEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGP 180
           IEGT WEALKPCM GMN WLFVHSEEIP AIKPYRDFQKEKKL+ NDFTGAVFEGK+Y P
Sbjct: 121 IEGTPWEALKPCMTGMNAWLFVHSEEIPPAIKPYRDFQKEKKLDSNDFTGAVFEGKFYAP 180

Query: 181 DDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGG 232
            DFK LETMP+RAE+YAK+LG L  PASSLVGT+QAPAR+++M+LKAYVQKLEE+ GGG
Sbjct: 181 GDFKQLETMPTRAEIYAKLLGTLNSPASSLVGTIQAPARELVMLLKAYVQKLEEESGGG 233

[Close]

BLAST of CmoCh04G002670 vs. TrEMBL
Match: B9RY97_RICCO (50S ribosomal protein L10, putative OS=Ricinus communis GN=RCOM_0811410 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.4e-86
Identity = 164/233 (70.39%), Postives = 187/233 (80.26%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           ME +LLSFPS KT     +       NP    PL  S  +   Y+ + +  AISRTKKEE
Sbjct: 1   METTLLSFPSSKTSPCQTLTQFRSFRNPF---PLSKSFRKPTSYKPISINSAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK QL+ CYLLA IKY GFTVKQFQ+LRR+LPE+++LIVAKNTLV KAIEGT WEA
Sbjct: 61  TVETVKTQLENCYLLAAIKYTGFTVKQFQDLRRALPESTRLIVAKNTLVFKAIEGTPWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFVHSEEIP A+KPYR FQK+KKLE NDFTGAVFEGK+YGPDDFK LET
Sbjct: 121 LKPCMKGMNAWLFVHSEEIPEALKPYRTFQKDKKLESNDFTGAVFEGKFYGPDDFKQLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGG 234
           MPSRAE+YAK+LG L+ P+  LV TLQAPARDV+MVLKAYV+KLE++ GGGGG
Sbjct: 181 MPSRAEIYAKILGALQSPSIGLVSTLQAPARDVIMVLKAYVKKLEDESGGGGG 230

[Close]

BLAST of CmoCh04G002670 vs. TrEMBL
Match: B9HU05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22290g PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 4.1e-86
Identity = 171/227 (75.33%), Postives = 187/227 (82.38%), Query Frame = 1


Query: 5   LLSFPSFKTPSSSQILTLNRPTNPLSFS-PLRHSTNQGRHYRCLKVAGAISRTKKEETVE 64
           LLSFPS K P S    T  RP+NP S S P  H T+    +R + +  AISRTKKEETVE
Sbjct: 6   LLSFPSSKPPLSR---THFRPSNPFSLSFPTTHKTSVS--HRPITIKSAISRTKKEETVE 65

Query: 65  TVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEALKP 124
            VK QL+ CYLLA IKY GFTVKQFQ+ RRSLPE+SKLIVAKNTLV KAIEGT WEALKP
Sbjct: 66  IVKTQLENCYLLAAIKYTGFTVKQFQDFRRSLPESSKLIVAKNTLVYKAIEGTPWEALKP 125

Query: 125 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPS 184
           CM GMN WLFVH+EEIP A+KPYRDFQKEKKLE NDFTGAVFEGK+YGPDDFK LETMPS
Sbjct: 126 CMTGMNAWLFVHTEEIPEALKPYRDFQKEKKLE-NDFTGAVFEGKFYGPDDFKQLETMPS 185

Query: 185 RAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGG 231
           RAE+YAK+LG L+GPA  LVGTLQAPARDV+MVLKAYVQKLEE+ GG
Sbjct: 186 RAEIYAKILGALQGPAIGLVGTLQAPARDVVMVLKAYVQKLEEESGG 226

[Close]

BLAST of CmoCh04G002670 vs. TAIR10
Match: AT5G13510.1 (AT5G13510.1 Ribosomal protein L10 family protein)

HSP 1 Score: 286.2 bits (731), Expect = 1.8e-77
Identity = 144/227 (63.44%), Postives = 175/227 (77.09%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           ME +LLSF S  +P   Q ++   P           ++N   + R   +  A+SR KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTPK----------TSNSPNYPRLPVIRSAVSRNKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVE VK  L+ C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L+ PA +LV TLQAPAR+V+MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of CmoCh04G002670 vs. TAIR10
Match: AT3G12370.1 (AT3G12370.1 Ribosomal protein L10 family protein)

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-47
Identity = 92/146 (63.01%), Postives = 108/146 (73.97%), Query Frame = 1


Query: 66  KEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETS--KLIVAKNTLVLKAIEGTTWEALKP 125
           K  L+ C+ + GI Y G +VKQ QELR  L E +  KL+VAKNTLV KA+EGT WE+LKP
Sbjct: 15  KINLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKP 74

Query: 126 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPS 185
           CMKGMN WLFV SE+IPAA+K + +FQKEKKL DN+  GAVFE K Y P D+K +ETMPS
Sbjct: 75  CMKGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPS 134

Query: 186 RAEVYAKMLGLLKGPASSLVGTLQAP 210
           RA+VY  MLG L  PA  LV  LQAP
Sbjct: 135 RADVYGMMLGSLHWPALDLVNALQAP 160

[Close]

BLAST of CmoCh04G002670 vs. NCBI nr
Match: gi|659090098|ref|XP_008445837.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo])

HSP 1 Score: 416.0 bits (1068), Expect = 4.3e-113
Identity = 209/232 (90.09%), Postives = 220/232 (94.83%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASL+SF SF  P SSQILTLNRPTNPLSFS  RHSTNQ RHYR LKVA AISRTKKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK+QL+ CYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           MPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 MPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CmoCh04G002670 vs. NCBI nr
Match: gi|449451707|ref|XP_004143603.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis sativus])

HSP 1 Score: 413.3 bits (1061), Expect = 2.8e-112
Identity = 210/234 (89.74%), Postives = 221/234 (94.44%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKV+ AISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+W
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FK L
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           ETMPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 234

[Close]

BLAST of CmoCh04G002670 vs. NCBI nr
Match: gi|802540314|ref|XP_012075838.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas])

HSP 1 Score: 339.7 bits (870), Expect = 4.0e-90
Identity = 177/231 (76.62%), Postives = 192/231 (83.12%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFS-PLRHSTNQGRHYRCLKVAGAISRTKKE 60
           ME +L SFPS K PS SQ L   R TNP SFS PL   T+    YR + +  AISRTKKE
Sbjct: 30  METTLFSFPSSK-PSPSQTLIQFRSTNPFSFSKPLHKPTS----YRPISINSAISRTKKE 89

Query: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWE 120
           ETVETVK QL+ CYLLA IKY GFTVKQFQELRRSLPE+SKLIVAKNTLV KAIEGT WE
Sbjct: 90  ETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEGTQWE 149

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180
           ALKPCMKGMN WLFVH+EEIP AIKPYR+FQKEKKLEDNDFTGAVFEGK+YGP DFK LE
Sbjct: 150 ALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDFKQLE 209

Query: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGG 231
           TMPSRAE+YAKMLG L+ PA  LV TLQAPARDV+MVLKAYV+KLE++ GG
Sbjct: 210 TMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDESGG 255

[Close]

BLAST of CmoCh04G002670 vs. NCBI nr
Match: gi|1009120791|ref|XP_015877114.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 338.2 bits (866), Expect = 1.2e-89
Identity = 174/237 (73.42%), Postives = 201/237 (84.81%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSS-SQILTLNRPTNPL-SFSPLRHSTN-QGRHYRCLKVAGAISRTK 60
           MEA+L SFPS   PS  SQ LTL+RPTNPL SF+P     N Q R +  ++   AISRTK
Sbjct: 1   MEATLFSFPSSSRPSPLSQTLTLSRPTNPLLSFTPNPTRINPQPRRFPSIR--SAISRTK 60

Query: 61  KEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTT 120
           KE+TVETVK+ L+ CYL+AGIKYKGFTVKQFQ+LRRSLPE +KLIVAKNTLV KAIEGT 
Sbjct: 61  KEQTVETVKKNLENCYLIAGIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ 120

Query: 121 WEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKT 180
           WE LKPCM GMN WLFVHSEEIPAAIKPYR FQKE+KL++NDFTGAVFEGK+YGP DFK 
Sbjct: 121 WEVLKPCMTGMNAWLFVHSEEIPAAIKPYRQFQKERKLDENDFTGAVFEGKFYGPGDFKQ 180

Query: 181 LETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGGQ 235
           LE+MP+RAE+YAK+LG L+ PA +LVGTLQAPARD++M+L+AYV KLEE+GGGGGGQ
Sbjct: 181 LESMPTRAEIYAKLLGQLQTPALNLVGTLQAPARDLVMLLRAYVNKLEEEGGGGGGQ 235

[Close]

BLAST of CmoCh04G002670 vs. NCBI nr
Match: gi|595797363|ref|XP_007201264.1| (hypothetical protein PRUPE_ppa010824mg [Prunus persica])

HSP 1 Score: 330.5 bits (846), Expect = 2.4e-87
Identity = 170/239 (71.13%), Postives = 192/239 (80.33%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILT-----LNRPTNP---LSFSPLRHSTNQGRHYRCLKVAGA 60
           MEA+L SFPS K PS S   T     L RPTNP   L+  P RH      H+R   +  A
Sbjct: 1   MEATLFSFPSSKPPSPSLTQTQSKTLLTRPTNPFLSLTPRPTRH------HHRLPTIRSA 60

Query: 61  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKA 120
           ISRTKKE+TVET+KE L+ C+LLAGIKYKG TVKQFQ+LR+ LPET+KLIVAKNTLV KA
Sbjct: 61  ISRTKKEQTVETIKENLENCHLLAGIKYKGLTVKQFQDLRKVLPETTKLIVAKNTLVYKA 120

Query: 121 IEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGP 180
           IEGT WEALKPCM GMN WLFVHSEEIP AIKPYRDFQKEKKL+ NDFTGAVFEGK+Y P
Sbjct: 121 IEGTPWEALKPCMTGMNAWLFVHSEEIPPAIKPYRDFQKEKKLDSNDFTGAVFEGKFYAP 180

Query: 181 DDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGG 232
            DFK LETMP+RAE+YAK+LG L  PASSLVGT+QAPAR+++M+LKAYVQKLEE+ GGG
Sbjct: 181 GDFKQLETMPTRAEIYAKLLGTLNSPASSLVGTIQAPARELVMLLKAYVQKLEEESGGG 233

The following BLAST results are available for this feature:

BLAST of CmoCh04G002670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK10_TOBAC	2.7e-83	68.12	50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1	[more]
RK10_ARATH	3.3e-76	63.44	50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 S...	[more]
RL10_THESQ	1.5e-17	30.90	50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) GN=rplJ PE=3 SV=1	[more]
RL10_THEP1	1.5e-17	30.90	50S ribosomal protein L10 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 ...	[more]
RL10_THEMA	5.8e-17	30.34	50S ribosomal protein L10 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM...	[more]

BLAST of CmoCh04G002670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLL5_CUCSA	2.0e-112	89.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G176000 PE=3 SV=1	[more]
A0A067LF88_JATCU	2.8e-90	76.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15458 PE=3 SV=1	[more]
M5VZQ9_PRUPE	1.7e-87	71.13	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010824mg PE=3 SV=1	[more]
B9RY97_RICCO	1.4e-86	70.39	50S ribosomal protein L10, putative OS=Ricinus communis GN=RCOM_0811410 PE=3 SV=...	[more]
B9HU05_POPTR	4.1e-86	75.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22290g PE=3 SV=1	[more]

BLAST of CmoCh04G002670 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13510.1	1.8e-77	63.44	Ribosomal protein L10 family protein	[more]
AT3G12370.1	2.6e-47	63.01	Ribosomal protein L10 family protein	[more]

BLAST of CmoCh04G002670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090098\|ref\|XP_008445837.1\|	4.3e-113	90.09	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo]	[more]
gi\|449451707\|ref\|XP_004143603.1\|	2.8e-112	89.74	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis sativus]	[more]
gi\|802540314\|ref\|XP_012075838.1\|	4.0e-90	76.62	PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]	[more]
gi\|1009120791\|ref\|XP_015877114.1\|	1.2e-89	73.42	PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|595797363\|ref\|XP_007201264.1\|	2.4e-87	71.13	hypothetical protein PRUPE_ppa010824mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001790	Ribosomal_L10P
IPR022973	Ribosomal_L10

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0019843	rRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G002670.1	CmoCh04G002670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 55..151 score: 6.3
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 53..213 score: 18
None	No IPR available	PANTHER	PTHR11560	FAMILY NOT NAMED	coord: 49..229 score: 3.1
None	No IPR available	unknown	SSF160369	Ribosomal protein L10-like	coord: 55..223 score: 9.29

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G002670	Cucsa.165910	Cucumber (Gy14) v1	cgycmoB0474
CmoCh04G002670	CmaCh04G002590	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G002670	Cla020083	Watermelon (97103) v1	cmowmB720
CmoCh04G002670	Csa5G176000	Cucumber (Chinese Long) v2	cmocuB737
CmoCh04G002670	MELO3C011720	Melon (DHL92) v3.5.1	cmomeB646
CmoCh04G002670	ClCG02G013790	Watermelon (Charleston Gray)	cmowcgB644
CmoCh04G002670	CSPI05G08950	Wild cucumber (PI 183967)	cmocpiB747
CmoCh04G002670	Lsi04G008230	Bottle gourd (USVL1VR-Ls)	cmolsiB670
CmoCh04G002670	Cp4.1LG01g04370	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G002670	MELO3C011720.2	Melon (DHL92) v3.6.1	cmomedB733
CmoCh04G002670	CsaV3_5G006380	Cucumber (Chinese Long) v3	cmocucB0873
CmoCh04G002670	Cla97C02G039440	Watermelon (97103) v2	cmowmbB714
CmoCh04G002670	Bhi07G000866	Wax gourd	cmowgoB0893
CmoCh04G002670	CsGy5G006310	Cucumber (Gy14) v2	cgybcmoB652
CmoCh04G002670	Carg23761	Silver-seed gourd	carcmoB1167

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G002670	Cucumber (Gy14) v2	cgybcmoB389
CmoCh04G002670	Cucumber (Gy14) v2	cgybcmoB522
CmoCh04G002670	Melon (DHL92) v3.6.1	cmomedB770
CmoCh04G002670	Silver-seed gourd	carcmoB0226
CmoCh04G002670	Silver-seed gourd	carcmoB0422
CmoCh04G002670	Silver-seed gourd	carcmoB1139
CmoCh04G002670	Cucumber (Chinese Long) v3	cmocucB0817
CmoCh04G002670	Cucumber (Chinese Long) v3	cmocucB0837
CmoCh04G002670	Cucumber (Chinese Long) v3	cmocucB0882
CmoCh04G002670	Cucumber (Chinese Long) v3	cmocucB0908
CmoCh04G002670	Watermelon (97103) v2	cmowmbB693
CmoCh04G002670	Watermelon (97103) v2	cmowmbB716
CmoCh04G002670	Watermelon (97103) v2	cmowmbB722
CmoCh04G002670	Wax gourd	cmowgoB0821
CmoCh04G002670	Wax gourd	cmowgoB0877
CmoCh04G002670	Cucurbita moschata (Rifu)	cmocmoB259
CmoCh04G002670	Cucurbita moschata (Rifu)	cmocmoB421
CmoCh04G002670	Cucurbita moschata (Rifu)	cmocmoB433
CmoCh04G002670	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G002670	Cucumber (Gy14) v1	cgycmoB0843
CmoCh04G002670	Cucurbita maxima (Rimu)	cmacmoB307
CmoCh04G002670	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G002670	Wild cucumber (PI 183967)	cmocpiB755
CmoCh04G002670	Cucumber (Chinese Long) v2	cmocuB746
CmoCh04G002670	Cucumber (Chinese Long) v2	cmocuB692
CmoCh04G002670	Melon (DHL92) v3.5.1	cmomeB619
CmoCh04G002670	Watermelon (97103) v1	cmowmB644
CmoCh04G002670	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G002670	Cucurbita pepo (Zucchini)	cmocpeB705
CmoCh04G002670	Bottle gourd (USVL1VR-Ls)	cmolsiB619
CmoCh04G002670	Bottle gourd (USVL1VR-Ls)	cmolsiB634
CmoCh04G002670	Bottle gourd (USVL1VR-Ls)	cmolsiB655