Cla020083 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020083
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	50S ribosomal protein L10 (AHRD V1 ***- B6SUJ0_MAIZE); contains Interpro domain(s) IPR001790 Ribosomal protein L10
Location	Chr2 : 23927701 .. 23928405 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTTCTCTTCTAAGCTTTACCTCCTTCACACCCCCTTCTTCTTCTTCTCAAATTCTAACCCTAAACCGACCCACAAACCCATTTTCCTTCTCTCTCCCCCGCCATTCTACCAGTCAAAGCCGCCATTATCGCGGCCTCAAGGTCGCTGCCGCCATTTCCCGCACTAAGAAAGAGGAAACCGTGGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCCGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTCCGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCCAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACCTCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCGGCCGCAATTAAGCCTTATAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGCAGGGTCCGGCGTCAAGCTTGGTTGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTCTGAAGGCCTACGTGAAGAAATTGGAGGAGCAAGGCGGCGGCGCTGGACAGTGA

mRNA sequence

ATGGAAGCTTCTCTTCTAAGCTTTACCTCCTTCACACCCCCTTCTTCTTCTTCTCAAATTCTAACCCTAAACCGACCCACAAACCCATTTTCCTTCTCTCTCCCCCGCCATTCTACCAGTCAAAGCCGCCATTATCGCGGCCTCAAGGTCGCTGCCGCCATTTCCCGCACTAAGAAAGAGGAAACCGTGGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCCGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTCCGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCCAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACCTCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCGGCCGCAATTAAGCCTTATAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGCAGGGTCCGGCGTCAAGCTTGGTTGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTCTGAAGGCCTACGTGAAGAAATTGGAGGAGCAAGGCGGCGGCGCTGGACAGTGA

Coding sequence (CDS)

ATGGAAGCTTCTCTTCTAAGCTTTACCTCCTTCACACCCCCTTCTTCTTCTTCTCAAATTCTAACCCTAAACCGACCCACAAACCCATTTTCCTTCTCTCTCCCCCGCCATTCTACCAGTCAAAGCCGCCATTATCGCGGCCTCAAGGTCGCTGCCGCCATTTCCCGCACTAAGAAAGAGGAAACCGTGGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCCGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTCCGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCCAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACCTCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCGGCCGCAATTAAGCCTTATAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGCAGGGTCCGGCGTCAAGCTTGGTTGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTCTGAAGGCCTACGTGAAGAAATTGGAGGAGCAAGGCGGCGGCGCTGGACAGTGA

Protein sequence

MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ

Homology

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BLAST of Cla020083 vs. Swiss-Prot
Match: RK10_TOBAC (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.4e-87
Identity = 163/223 (73.09%), Postives = 189/223 (84.75%), Query Frame = 1


Query: 9   TSFTPPSSSSQILTLNRPTN-PFSFSLPRHSTSQSRHYRGLKVAAAISRTKKEETVETVK 68
           T FT PSS+S     +  ++   S +LP H   + +  + L + +AISRTKKEETVETVK
Sbjct: 4   TFFTLPSSTSHSYPFSLKSHFNNSLTLPTHPHFKPKS-KNLTIRSAISRTKKEETVETVK 63

Query: 69  QQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMK 128
           QQLEDCYLLAGI YKG TVKQFQELR  LP+T+KL+VAKNTLVLKAIEGT WEALKPCMK
Sbjct: 64  QQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEALKPCMK 123

Query: 129 GMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMPSRAE 188
           GMN WLFVHSEEIPAA+KPYR FQKEKKLE+NDFTGAVFEGK+YGP++FKALET+P+RAE
Sbjct: 124 GMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALETLPTRAE 183

Query: 189 VYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGG 231
           +YA++LG L+GPAS++VGTIQAPAR L+MVLKAYVKKLEE+GG
Sbjct: 184 IYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

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BLAST of Cla020083 vs. Swiss-Prot
Match: RK10_ARATH (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.7e-78
Identity = 151/229 (65.94%), Postives = 176/229 (76.86%), Query Frame = 1


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVA-AAISRTKK 60
           ME +LLSF+S   P    +I TL               TS S +Y  L V  +A+SR KK
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTP------------KTSNSPNYPRLPVIRSAVSRNKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVE VK  LE+C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT W
Sbjct: 61  EETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180
           EALKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK L
Sbjct: 121 EALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVL 180

Query: 181 ETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQ 229
           ETMP+RAEVYAKMLG LQ PA +LV T+QAPARE++MVL AY+KKLE++
Sbjct: 181 ETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

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BLAST of Cla020083 vs. Swiss-Prot
Match: RL10_TRIEI (50S ribosomal protein L10 OS=Trichodesmium erythraeum (strain IMS101) GN=rplJ PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-18
Identity = 56/162 (34.57%), Postives = 91/162 (56.17%), Query Frame = 1


Query: 55  SRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLI-VAKNTLVLKA 114
           S+ +KEE +  +KQ L +  L   I Y+G +V +  +LRR L  T  +  +AKNTL+  A
Sbjct: 4   SKKQKEEMLAGIKQNLSESQLALVINYQGLSVAEITDLRRRLIPTGSICSIAKNTLMGIA 63

Query: 115 I-EGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYG 174
           + E ++W+ ++  + G N +LF+ ++ I  AIK Y+DFQK  K    +F G V EG+   
Sbjct: 64  VKEDSNWQPMEDLLAGSNAFLFLKND-IGGAIKAYQDFQKATK--KTEFKGGVMEGRLLD 123

Query: 175 PDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPAREL 215
            D  KA+  +PS+ E+ A++ G +   A+ L  ++ A   +L
Sbjct: 124 KDQVKAIADLPSKEELLAQVAGAINNIATKLAISLDAVPTQL 162

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BLAST of Cla020083 vs. Swiss-Prot
Match: RL10_METPB (50S ribosomal protein L10 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplJ PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-16
Identity = 60/174 (34.48%), Postives = 84/174 (48.28%), Query Frame = 1


Query: 54  ISRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLI-VAKNTLVLK 113
           + RT K + V T+        ++    YKG TV   Q+LR  + +    + VAKN L   
Sbjct: 1   MDRTAKADLVSTLNGVFTTNAVVVVAHYKGLTVADMQKLRSQMKQAGATVKVAKNRLASI 60

Query: 114 AIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYG 173
           A++GT   ++KP +KG    L  +S +  AA K   DF K    +     G         
Sbjct: 61  ALDGTDVASIKPLLKGPT--LLAYSSDPVAAAKVAVDFAKTN--DKLVILGGAMGTTALN 120

Query: 174 PDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLE 227
           PD  KAL T+PS  E+ AK++GL+Q PA+ +   + APA +L  V  AY KK E
Sbjct: 121 PDGVKALATLPSLDELRAKLVGLIQAPATKVAQVVNAPAAKLARVFGAYAKKDE 170

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BLAST of Cla020083 vs. Swiss-Prot
Match: RL10_METRJ (50S ribosomal protein L10 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplJ PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-16
Identity = 59/174 (33.91%), Postives = 86/174 (49.43%), Query Frame = 1


Query: 54  ISRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLI-VAKNTLVLK 113
           + RT K + V T+     +  ++    YKG TV   Q+LR  + +    + VAKN+L   
Sbjct: 1   MDRTAKADLVSTLNGVFNESAVVVVAHYKGLTVADMQKLRAQMKQAGATVKVAKNSLAGI 60

Query: 114 AIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYG 173
           A++GT   ++KP +KG    L  +S +  AA K   DF K    +     G         
Sbjct: 61  ALDGTDVASIKPLLKGPT--LLAYSGDPVAAAKVAVDFAKAN--DKLVILGGAMGKTALN 120

Query: 174 PDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLE 227
           PD  KAL ++PS  E+ AK++GL+Q PA+ +   + APA +L  V  AY KK E
Sbjct: 121 PDGVKALASLPSLDELRAKIVGLVQAPATKIAQVVNAPASKLARVFGAYAKKDE 170

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BLAST of Cla020083 vs. TrEMBL
Match: A0A0A0KLL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G176000 PE=3 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 8.0e-122
Identity = 224/235 (95.32%), Postives = 231/235 (98.30%), Query Frame = 1


Query: 1   MEASLLSFTSFTPPSSSS-QILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKK 60
           MEASL++FTSFTPPSSSS QILTLNRPTNP SFSLPRHST+Q+RHYRGLKV+AAISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 235
           ETMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 235

[Close]

BLAST of Cla020083 vs. TrEMBL
Match: A0A067LF88_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15458 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 3.3e-91
Identity = 175/231 (75.76%), Postives = 192/231 (83.12%), Query Frame = 1


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKE 60
           ME +L SF S  P  S SQ L   R TNPFSFS P H  +    YR + + +AISRTKKE
Sbjct: 30  METTLFSFPSSKP--SPSQTLIQFRSTNPFSFSKPLHKPTS---YRPISINSAISRTKKE 89

Query: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVK QLE+CYLLA IKY GFTVKQFQELRRSLPE+SKLIVAKNTLV KAIEGT WE
Sbjct: 90  ETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEGTQWE 149

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMN WLFVH+EEIP AIKPYR+FQKEKKLEDNDFTGAVFEGK+YGP DFK LE
Sbjct: 150 ALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDFKQLE 209

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGG 232
           TMPSRAE+YAKMLG LQ PA  LV T+QAPAR+++MVLKAYVKKLE++ GG
Sbjct: 210 TMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDESGG 255

[Close]

BLAST of Cla020083 vs. TrEMBL
Match: M5VZQ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010824mg PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.9e-87
Identity = 170/235 (72.34%), Postives = 193/235 (82.13%), Query Frame = 1


Query: 1   MEASLLSFTSFTPPSSS---SQILTL-NRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISR 60
           MEA+L SF S  PPS S   +Q  TL  RPTNPF    PR +     H+R   + +AISR
Sbjct: 1   MEATLFSFPSSKPPSPSLTQTQSKTLLTRPTNPFLSLTPRPTR---HHHRLPTIRSAISR 60

Query: 61  TKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEG 120
           TKKE+TVET+K+ LE+C+LLAGIKYKG TVKQFQ+LR+ LPET+KLIVAKNTLV KAIEG
Sbjct: 61  TKKEQTVETIKENLENCHLLAGIKYKGLTVKQFQDLRKVLPETTKLIVAKNTLVYKAIEG 120

Query: 121 TSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDF 180
           T WEALKPCM GMN WLFVHSEEIP AIKPYRDFQKEKKL+ NDFTGAVFEGK+Y P DF
Sbjct: 121 TPWEALKPCMTGMNAWLFVHSEEIPPAIKPYRDFQKEKKLDSNDFTGAVFEGKFYAPGDF 180

Query: 181 KALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGG 232
           K LETMP+RAE+YAK+LG L  PASSLVGTIQAPAREL+M+LKAYV+KLEE+ GG
Sbjct: 181 KQLETMPTRAEIYAKLLGTLNSPASSLVGTIQAPARELVMLLKAYVQKLEEESGG 232

[Close]

BLAST of Cla020083 vs. TrEMBL
Match: B9HU05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22290g PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 4.9e-87
Identity = 170/228 (74.56%), Postives = 190/228 (83.33%), Query Frame = 1


Query: 5   LLSFTSFTPPSSSSQILTLNRPTNPFSFSLPR-HSTSQSRHYRGLKVAAAISRTKKEETV 64
           LLSF S  PP S +      RP+NPFS S P  H TS S  +R + + +AISRTKKEETV
Sbjct: 6   LLSFPSSKPPLSRTHF----RPSNPFSLSFPTTHKTSVS--HRPITIKSAISRTKKEETV 65

Query: 65  ETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALK 124
           E VK QLE+CYLLA IKY GFTVKQFQ+ RRSLPE+SKLIVAKNTLV KAIEGT WEALK
Sbjct: 66  EIVKTQLENCYLLAAIKYTGFTVKQFQDFRRSLPESSKLIVAKNTLVYKAIEGTPWEALK 125

Query: 125 PCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMP 184
           PCM GMN WLFVH+EEIP A+KPYRDFQKEKKLE NDFTGAVFEGK+YGPDDFK LETMP
Sbjct: 126 PCMTGMNAWLFVHTEEIPEALKPYRDFQKEKKLE-NDFTGAVFEGKFYGPDDFKQLETMP 185

Query: 185 SRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGG 232
           SRAE+YAK+LG LQGPA  LVGT+QAPAR+++MVLKAYV+KLEE+ GG
Sbjct: 186 SRAEIYAKILGALQGPAIGLVGTLQAPARDVVMVLKAYVQKLEEESGG 226

[Close]

BLAST of Cla020083 vs. TrEMBL
Match: B9HM04_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s04560g PE=3 SV=2)

HSP 1 Score: 328.6 bits (841), Expect = 6.4e-87
Identity = 170/229 (74.24%), Postives = 190/229 (82.97%), Query Frame = 1


Query: 4   SLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPR-HSTSQSRHYRGLKVAAAISRTKKEET 63
           SLLSF S  PP + +      RP NPFSFS P  H TS S  +R + + +AISRTKKEET
Sbjct: 5   SLLSFPSSKPPPTRTHF----RPANPFSFSFPTTHKTSIS--HRPINIKSAISRTKKEET 64

Query: 64  VETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEAL 123
           VETVK QLE+CYLLA IKY GFTVKQFQ+LRRSLPE+SK+IVAKNTLV KAIE T WEAL
Sbjct: 65  VETVKTQLENCYLLAAIKYTGFTVKQFQDLRRSLPESSKIIVAKNTLVYKAIENTPWEAL 124

Query: 124 KPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETM 183
           KPCM GMN WLFVHSEEIP A+KPYRDFQKEKKLE NDFTGAVFEGK+YGP DFK LETM
Sbjct: 125 KPCMTGMNAWLFVHSEEIPEALKPYRDFQKEKKLE-NDFTGAVFEGKFYGPGDFKQLETM 184

Query: 184 PSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGG 232
           PSRAE+YAK+LG LQGPA  LVGT+QAPAR+++MVLKAYV+KLEE+  G
Sbjct: 185 PSRAEIYAKILGALQGPAIGLVGTLQAPARDVVMVLKAYVQKLEEESSG 226

[Close]

BLAST of Cla020083 vs. NCBI nr
Match: gi|449451707|ref|XP_004143603.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis sativus])

HSP 1 Score: 444.5 bits (1142), Expect = 1.1e-121
Identity = 224/235 (95.32%), Postives = 231/235 (98.30%), Query Frame = 1


Query: 1   MEASLLSFTSFTPPSSSS-QILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKK 60
           MEASL++FTSFTPPSSSS QILTLNRPTNP SFSLPRHST+Q+RHYRGLKV+AAISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 235
           ETMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 235

[Close]

BLAST of Cla020083 vs. NCBI nr
Match: gi|659090098|ref|XP_008445837.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo])

HSP 1 Score: 440.7 bits (1132), Expect = 1.6e-120
Identity = 222/234 (94.87%), Postives = 229/234 (97.86%), Query Frame = 1


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKE 60
           MEASL+SFTSFTPP SS QILTLNRPTNP SFSLPRHST+Q+RHYRGLKVAAAISRTKKE
Sbjct: 1   MEASLISFTSFTPPPSS-QILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKE 60

Query: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSWE
Sbjct: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FKALE
Sbjct: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALE 180

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 235
           TMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 TMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of Cla020083 vs. NCBI nr
Match: gi|802540314|ref|XP_012075838.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas])

HSP 1 Score: 342.8 bits (878), Expect = 4.7e-91
Identity = 175/231 (75.76%), Postives = 192/231 (83.12%), Query Frame = 1


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKE 60
           ME +L SF S  P  S SQ L   R TNPFSFS P H  +    YR + + +AISRTKKE
Sbjct: 30  METTLFSFPSSKP--SPSQTLIQFRSTNPFSFSKPLHKPTS---YRPISINSAISRTKKE 89

Query: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVK QLE+CYLLA IKY GFTVKQFQELRRSLPE+SKLIVAKNTLV KAIEGT WE
Sbjct: 90  ETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEGTQWE 149

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMN WLFVH+EEIP AIKPYR+FQKEKKLEDNDFTGAVFEGK+YGP DFK LE
Sbjct: 150 ALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDFKQLE 209

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGG 232
           TMPSRAE+YAKMLG LQ PA  LV T+QAPAR+++MVLKAYVKKLE++ GG
Sbjct: 210 TMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDESGG 255

[Close]

BLAST of Cla020083 vs. NCBI nr
Match: gi|1009120791|ref|XP_015877114.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 337.0 bits (863), Expect = 2.6e-89
Identity = 166/233 (71.24%), Postives = 194/233 (83.26%), Query Frame = 1


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKE 60
           MEA+L SF S + PS  SQ LTL+RPTNP     P  +    +  R   + +AISRTKKE
Sbjct: 1   MEATLFSFPSSSRPSPLSQTLTLSRPTNPLLSFTPNPTRINPQPRRFPSIRSAISRTKKE 60

Query: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           +TVETVK+ LE+CYL+AGIKYKGFTVKQFQ+LRRSLPE +KLIVAKNTLV KAIEGT WE
Sbjct: 61  QTVETVKKNLENCYLIAGIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
            LKPCM GMN WLFVHSEEIPAAIKPYR FQKE+KL++NDFTGAVFEGK+YGP DFK LE
Sbjct: 121 VLKPCMTGMNAWLFVHSEEIPAAIKPYRQFQKERKLDENDFTGAVFEGKFYGPGDFKQLE 180

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAG 234
           +MP+RAE+YAK+LG LQ PA +LVGT+QAPAR+L+M+L+AYV KLEE+GGG G
Sbjct: 181 SMPTRAEIYAKLLGQLQTPALNLVGTLQAPARDLVMLLRAYVNKLEEEGGGGG 233

[Close]

BLAST of Cla020083 vs. NCBI nr
Match: gi|1012001669|ref|XP_015932686.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Arachis duranensis])

HSP 1 Score: 330.5 bits (846), Expect = 2.4e-87
Identity = 169/240 (70.42%), Postives = 198/240 (82.50%), Query Frame = 1


Query: 1   MEASLLSFTSFTPPSSSSQILT---LNRPTNPFSFSLPRHSTSQSR-----HYRGLKVAA 60
           MEA+  +  SF  PS++S+  T   L RP NPFS  LP  S +  R     ++R   + A
Sbjct: 1   MEATATAVMSFALPSTNSKTQTCHLLTRPINPFS--LPPSSKTHLRLPRPHNHRLPTITA 60

Query: 61  AISRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLK 120
           AISRTKKE TVETVKQQLE+CYLLAGI YKGFTVKQFQELR+SLPET+KL+VAKNTLV K
Sbjct: 61  AISRTKKEATVETVKQQLENCYLLAGINYKGFTVKQFQELRKSLPETTKLLVAKNTLVYK 120

Query: 121 AIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYG 180
           A+EGT WE LKPCMKGMNVWLFVH+EEIPAAIKPYRDFQKEKKLE+NDFTG VFEGK+YG
Sbjct: 121 AVEGTRWETLKPCMKGMNVWLFVHTEEIPAAIKPYRDFQKEKKLEENDFTGGVFEGKFYG 180

Query: 181 PDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGA 233
           PD+FK LET+P+RAE+YA +LG L+ PAS+LV T+QAPAR+++MVLKAYVKKLEE+ G A
Sbjct: 181 PDEFKKLETLPTRAEIYANLLGSLKSPASALVSTLQAPARDVVMVLKAYVKKLEEEAGAA 238

The following BLAST results are available for this feature:

BLAST of Cla020083 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK10_TOBAC	1.4e-87	73.09	50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1	[more]
RK10_ARATH	2.7e-78	65.94	50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 S...	[more]
RL10_TRIEI	4.0e-18	34.57	50S ribosomal protein L10 OS=Trichodesmium erythraeum (strain IMS101) GN=rplJ PE...	[more]
RL10_METPB	1.0e-16	34.48	50S ribosomal protein L10 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIM...	[more]
RL10_METRJ	1.3e-16	33.91	50S ribosomal protein L10 OS=Methylobacterium radiotolerans (strain ATCC 27329 /...	[more]

BLAST of Cla020083 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLL5_CUCSA	8.0e-122	95.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G176000 PE=3 SV=1	[more]
A0A067LF88_JATCU	3.3e-91	75.76	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15458 PE=3 SV=1	[more]
M5VZQ9_PRUPE	2.9e-87	72.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010824mg PE=3 SV=1	[more]
B9HU05_POPTR	4.9e-87	74.56	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22290g PE=3 SV=1	[more]
B9HM04_POPTR	6.4e-87	74.24	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s04560g PE=3 SV=2	[more]

BLAST of Cla020083 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451707\|ref\|XP_004143603.1\|	1.1e-121	95.32	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis sativus]	[more]
gi\|659090098\|ref\|XP_008445837.1\|	1.6e-120	94.87	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo]	[more]
gi\|802540314\|ref\|XP_012075838.1\|	4.7e-91	75.76	PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]	[more]
gi\|1009120791\|ref\|XP_015877114.1\|	2.6e-89	71.24	PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|1012001669\|ref\|XP_015932686.1\|	2.4e-87	70.42	PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001790	Ribosomal_L10P
IPR022973	Ribosomal_L10

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU07118	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU14284	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla020083	Cla020083.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU07118	WMU07118	transcribed_cluster
WMU14284	WMU14284	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 56..152 score: 1.9
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 54..214 score: 18
None	No IPR available	PANTHER	PTHR11560	FAMILY NOT NAMED	coord: 53..230 score: 2.2
None	No IPR available	unknown	SSF160369	Ribosomal protein L10-like	coord: 56..224 score: 1.83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla020083	Cla97C02G039440	Watermelon (97103) v2	wmwmbB316
Cla020083	Csa5G176000	Cucumber (Chinese Long) v2	cuwmB428
Cla020083	MELO3C011720	Melon (DHL92) v3.5.1	mewmB071
Cla020083	ClCG02G013790	Watermelon (Charleston Gray)	wcgwmB197
Cla020083	CSPI05G08950	Wild cucumber (PI 183967)	cpiwmB440
Cla020083	Cucsa.165910	Cucumber (Gy14) v1	cgywmB310
Cla020083	CmaCh04G002590	Cucurbita maxima (Rimu)	cmawmB724
Cla020083	CmoCh04G002670	Cucurbita moschata (Rifu)	cmowmB720
Cla020083	Lsi04G008230	Bottle gourd (USVL1VR-Ls)	lsiwmB331
Cla020083	Cp4.1LG01g04370	Cucurbita pepo (Zucchini)	cpewmB452
Cla020083	CsGy5G006310	Cucumber (Gy14) v2	cgybwmB401
Cla020083	MELO3C011720.2	Melon (DHL92) v3.6.1	medwmB070
Cla020083	Carg23761	Silver-seed gourd	carwmB0864
Cla020083	CsaV3_5G006380	Cucumber (Chinese Long) v3	cucwmB454
Cla020083	Bhi07G000866	Wax gourd	wgowmB561

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla020083	Silver-seed gourd	carwmB0844
Cla020083	Cucumber (Chinese Long) v3	cucwmB278
Cla020083	Cucumber (Chinese Long) v3	cucwmB366
Cla020083	Watermelon (97103) v2	wmwmbB313
Cla020083	Watermelon (97103) v2	wmwmbB342
Cla020083	Wax gourd	wgowmB053
Cla020083	Wax gourd	wgowmB458
Cla020083	Watermelon (97103) v1	wmwmB053
Cla020083	Watermelon (97103) v1	wmwmB154
Cla020083	Cucumber (Gy14) v1	cgywmB556
Cla020083	Cucurbita maxima (Rimu)	cmawmB723
Cla020083	Cucurbita moschata (Rifu)	cmowmB719
Cla020083	Melon (DHL92) v3.5.1	mewmB383
Cla020083	Watermelon (Charleston Gray)	wcgwmB078
Cla020083	Cucumber (Chinese Long) v2	cuwmB268
Cla020083	Cucurbita pepo (Zucchini)	cpewmB451
Cla020083	Bottle gourd (USVL1VR-Ls)	lsiwmB273
Cla020083	Cucumber (Gy14) v2	cgybwmB252
Cla020083	Melon (DHL92) v3.6.1	medwmB376