CsGy5G006310 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G006310
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	50S ribosomal protein L10
Location	Chr5 : 4253320 .. 4254027 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTTCTCTTATAACCTTTACATCCTTCACACCTCCTTCTTCCTCTTCTACTCAAATTCTAACCCTAAACCGACCCACAAACCCATTGTCCTTCTCTCTTCCCCGCCATTCCACCAATCAAACCCGCCATTATCGTGGTCTCAAGGTTTCCGCCGCCATTTCCCGCACTAAGAAAGAAGAAACCGTCGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCTGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTACGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCTAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACATCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGTTATTTGTTCATTCTGAGGAAATTCCGGCCGCGATTAAGCCTTACAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACTGGAGCGGTTTTCGAAGGGAAATATTATGGACCGGATGAATTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCTAAAATGTTGGGTCTGTTGCAGGCTCCTGCATCAAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTTTGAAAGCATACGTGCAGAAATTGGAGGAGCAAGGCGGAGGCGGCGGGCAGTAA

mRNA sequence

ATGGAAGCTTCTCTTATAACCTTTACATCCTTCACACCTCCTTCTTCCTCTTCTACTCAAATTCTAACCCTAAACCGACCCACAAACCCATTGTCCTTCTCTCTTCCCCGCCATTCCACCAATCAAACCCGCCATTATCGTGGTCTCAAGGTTTCCGCCGCCATTTCCCGCACTAAGAAAGAAGAAACCGTCGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCTGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTACGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCTAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACATCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGTTATTTGTTCATTCTGAGGAAATTCCGGCCGCGATTAAGCCTTACAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACTGGAGCGGTTTTCGAAGGGAAATATTATGGACCGGATGAATTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCTAAAATGTTGGGTCTGTTGCAGGCTCCTGCATCAAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTTTGAAAGCATACGTGCAGAAATTGGAGGAGCAAGGCGGAGGCGGCGGGCAGTAA

Coding sequence (CDS)

ATGGAAGCTTCTCTTATAACCTTTACATCCTTCACACCTCCTTCTTCCTCTTCTACTCAAATTCTAACCCTAAACCGACCCACAAACCCATTGTCCTTCTCTCTTCCCCGCCATTCCACCAATCAAACCCGCCATTATCGTGGTCTCAAGGTTTCCGCCGCCATTTCCCGCACTAAGAAAGAAGAAACCGTCGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCTGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTACGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCTAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACATCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGTTATTTGTTCATTCTGAGGAAATTCCGGCCGCGATTAAGCCTTACAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACTGGAGCGGTTTTCGAAGGGAAATATTATGGACCGGATGAATTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCTAAAATGTTGGGTCTGTTGCAGGCTCCTGCATCAAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTTTGAAAGCATACGTGCAGAAATTGGAGGAGCAAGGCGGAGGCGGCGGGCAGTAA

Protein sequence

MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKALETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ

Homology

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BLAST of CsGy5G006310 vs. NCBI nr
Match: XP_004143603.1 (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis sativus] >KGN50478.1 hypothetical protein Csa_5G176000 [Cucumis sativus])

HSP 1 Score: 416.4 bits (1069), Expect = 6.5e-113
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ 235

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BLAST of CsGy5G006310 vs. NCBI nr
Match: XP_008445837.1 (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo])

HSP 1 Score: 401.0 bits (1029), Expect = 2.8e-108
Identity = 228/235 (97.02%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           MEASLI+FTSFTPP SS  QILTLNRPTNPLSFSLPRHSTNQTRHYRGLKV+AAISRTKK
Sbjct: 1   MEASLISFTSFTPPPSS--QILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPDEFKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ 233

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BLAST of CsGy5G006310 vs. NCBI nr
Match: XP_022990377.1 (50S ribosomal protein L10, chloroplastic [Cucurbita maxima])

HSP 1 Score: 375.2 bits (962), Expect = 1.7e-100
Identity = 197/235 (83.83%), Postives = 204/235 (86.81%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKV+AAISRTKK
Sbjct: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLL+ PAS                    VQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

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BLAST of CsGy5G006310 vs. NCBI nr
Match: XP_023523503.1 (50S ribosomal protein L10, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 373.2 bits (957), Expect = 6.3e-100
Identity = 196/235 (83.40%), Postives = 202/235 (85.96%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKVS AISRTKK
Sbjct: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FK L
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLL+ PAS                    VQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

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BLAST of CsGy5G006310 vs. NCBI nr
Match: XP_022943219.1 (50S ribosomal protein L10, chloroplastic [Cucurbita moschata])

HSP 1 Score: 361.7 bits (927), Expect = 1.9e-96
Identity = 189/230 (82.17%), Postives = 197/230 (85.65%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKV+ AISRTKK
Sbjct: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+W
Sbjct: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FK L
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQG 231
           ETMPSRAEVYAKMLGLL+ PAS                    VQKLEEQG
Sbjct: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG 228

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BLAST of CsGy5G006310 vs. TAIR10
Match: AT5G13510.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-65
Identity = 128/201 (63.68%), Postives = 152/201 (75.62%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           ME +L++F+S   P     +I TL   T           +N   + R   + +A+SR KK
Sbjct: 1   MEVALLSFSSSLSPLCHQ-RISTLTPKT-----------SNSPNYPRLPVIRSAVSRNKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVE VK  LE+C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT W
Sbjct: 61  EETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD FK L
Sbjct: 121 EALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPA 202
           ETMP+RAEVYAKMLG LQ+PA
Sbjct: 181 ETMPTRAEVYAKMLGALQSPA 189

[Close]

BLAST of CsGy5G006310 vs. TAIR10
Match: AT3G12370.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 176.4 bits (446), Expect = 2.1e-44
Identity = 86/136 (63.24%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 68  KQQLEDCYLLAGIKYKGFTVKQFQELRRSLPE--TSKLIVAKNTLVLKAIEGTSWEALKP 127
           K  LE+C+ + GI Y G +VKQ QELR  L E   +KL+VAKNTLV KA+EGT WE+LKP
Sbjct: 15  KINLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKP 74

Query: 128 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKALETMPS 187
           CMKGMN WLFV SE+IPAA+K + +FQKEKKL DN+  GAVFE K Y P ++K +ETMPS
Sbjct: 75  CMKGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPS 134

Query: 188 RAEVYAKMLGLLQAPA 202
           RA+VY  MLG L  PA
Sbjct: 135 RADVYGMMLGSLHWPA 150

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BLAST of CsGy5G006310 vs. Swiss-Prot
Match: sp|O80362|RK10_TOBAC (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.0e-74
Identity = 146/223 (65.47%), Postives = 169/223 (75.78%), Query Frame = 0


Query: 9   TSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKKEETVETVK 68
           T FT PSS+S       +     S +LP H   + +  + L + +AISRTKKEETVETVK
Sbjct: 4   TFFTLPSSTSHSYPFSLKSHFNNSLTLPTHPHFKPKS-KNLTIRSAISRTKKEETVETVK 63

Query: 69  QQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMK 128
           QQLEDCYLLAGI YKG TVKQFQELR  LP+T+KL+VAKNTLVLKAIEGT WEALKPCMK
Sbjct: 64  QQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEALKPCMK 123

Query: 129 GMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKALETMPSRAE 188
           GMN WLFVHSEEIPAA+KPYR FQKEKKLE+NDFTGAVFEGK+YGP+EFKALET+P+RAE
Sbjct: 124 GMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALETLPTRAE 183

Query: 189 VYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGG 232
           +YA++LG L+ PAS                    V+KLEE+GG
Sbjct: 184 IYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

[Close]

BLAST of CsGy5G006310 vs. Swiss-Prot
Match: sp|Q9FY50|RK10_ARATH (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.2e-64
Identity = 128/201 (63.68%), Postives = 152/201 (75.62%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           ME +L++F+S   P     +I TL   T           +N   + R   + +A+SR KK
Sbjct: 1   MEVALLSFSSSLSPLCHQ-RISTLTPKT-----------SNSPNYPRLPVIRSAVSRNKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVE VK  LE+C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT W
Sbjct: 61  EETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD FK L
Sbjct: 121 EALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPA 202
           ETMP+RAEVYAKMLG LQ+PA
Sbjct: 181 ETMPTRAEVYAKMLGALQSPA 189

[Close]

BLAST of CsGy5G006310 vs. Swiss-Prot
Match: sp|P82139|RK10_SPIOL (50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 PE=1 SV=2)

HSP 1 Score: 245.0 bits (624), Expect = 8.5e-64
Identity = 146/233 (62.66%), Postives = 179/233 (76.82%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLN----RPTNPLSFSLPRHSTNQTRHYRGLKVSAAIS 60
           ME++L  F S   P++  T   +L+     P  P + + PR      +H     ++AAIS
Sbjct: 1   MESTL--FLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPR---TTHKHPTTTTITAAIS 60

Query: 61  RTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIE 120
           RTKKEETVETV++ LE+CYLLA I YKGFTVKQFQ+LR++LPE + LIVAKNTLV KA++
Sbjct: 61  RTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQ 120

Query: 121 GTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDE 180
            T W A+KPCMKGMN WLFVHSEEIP AIKPYR FQKE+KLEDNDFTGA FEGK+YGP E
Sbjct: 121 DTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGE 180

Query: 181 FKALETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQ 230
            K LETMPS+AE++AK+LG L++P S XXXXXXXXXXXXXXXX   ++KLE++
Sbjct: 181 VKRLETMPSKAEIFAKLLGSLKSPGSAXXXXXXXXXXXXXXXXKAYIKKLEDE 228

[Close]

BLAST of CsGy5G006310 vs. Swiss-Prot
Match: sp|Q119S8|RL10_TRIEI (50S ribosomal protein L10 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=rplJ PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-17
Identity = 53/144 (36.81%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 56  SRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSL-PETSKLIVAKNTLVLKA 115
           S+ +KEE +  +KQ L +  L   I Y+G +V +  +LRR L P  S   +AKNTL+  A
Sbjct: 4   SKKQKEEMLAGIKQNLSESQLALVINYQGLSVAEITDLRRRLIPTGSICSIAKNTLMGIA 63

Query: 116 I-EGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYG 175
           + E ++W+ ++  + G N +LF+   +I  AIK Y+DFQK  K    +F G V EG+   
Sbjct: 64  VKEDSNWQPMEDLLAGSNAFLFL-KNDIGGAIKAYQDFQKATK--KTEFKGGVMEGRLLD 123

Query: 176 PDEFKALETMPSRAEVYAKMLGLL 198
            D+ KA+  +PS+ E+ A++ G +
Sbjct: 124 KDQVKAIADLPSKEELLAQVAGAI 144

[Close]

BLAST of CsGy5G006310 vs. Swiss-Prot
Match: sp|A9BDG5|RL10_PROM4 (50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplJ PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.6e-16
Identity = 51/145 (35.17%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 60  KEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSL-PETSKLIVAKNTLVLKAIEG- 119
           K++ VE +K  L+   +   I Y+G T+K+  +LR  L P +    V KNTL+ KAI+G 
Sbjct: 8   KKQIVEELKALLDQAEMALVIDYQGLTIKEMSDLRTRLGPSSGICKVTKNTLMRKAIDGD 67

Query: 120 TSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEF 179
           TSW +L+  + G N ++ V   ++  A+K  + FQKE K   +   G +FEGK    DE 
Sbjct: 68  TSWSSLESLLNGTNAFVLVKG-DVGGALKAVQAFQKETK--KSKTKGGLFEGKLLSQDEI 127

Query: 180 KALETMPSRAEVYAKMLGLLQAPAS 203
           KA+  +P++  + A++ G L + A+
Sbjct: 128 KAIANLPTKEVLMAQIAGALNSIAT 149

[Close]

BLAST of CsGy5G006310 vs. TrEMBL
Match: tr|A0A0A0KLL5|A0A0A0KLL5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G176000 PE=3 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 4.3e-113
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ 235

[Close]

BLAST of CsGy5G006310 vs. TrEMBL
Match: tr|A0A1S3BDM0|A0A1S3BDM0_CUCME (50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738 PE=3 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.9e-108
Identity = 228/235 (97.02%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           MEASLI+FTSFTPP SS  QILTLNRPTNPLSFSLPRHSTNQTRHYRGLKV+AAISRTKK
Sbjct: 1   MEASLISFTSFTPPPSS--QILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPDEFKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGGQ 233

[Close]

BLAST of CsGy5G006310 vs. TrEMBL
Match: tr|A0A067LF88|A0A067LF88_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15458 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 8.5e-77
Identity = 156/232 (67.24%), Postives = 174/232 (75.00%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           ME +L +F S  P   S +Q L   R TNP SFS P H       YR + +++AISRTKK
Sbjct: 30  METTLFSFPSSKP---SPSQTLIQFRSTNPFSFSKPLHKPTS---YRPISINSAISRTKK 89

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVK QLE+CYLLA IKY GFTVKQFQELRRSLPE+SKLIVAKNTLV KAIEGT W
Sbjct: 90  EETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEGTQW 149

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMN WLFVH+EEIP AIKPYR+FQKEKKLEDNDFTGAVFEGK+YGP +FK L
Sbjct: 150 EALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDFKQL 209

Query: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGG 233
           ETMPSRAE+YAKMLG LQ+PA                     V+KLE++ GG
Sbjct: 210 ETMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDESGG 255

[Close]

BLAST of CsGy5G006310 vs. TrEMBL
Match: tr|A0A2P5CTD8|A0A2P5CTD8_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_273340 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 9.4e-76
Identity = 174/234 (74.36%), Postives = 196/234 (83.76%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           MEA L++F S  P  S  +Q LTL RPTNPL    P H   ++R  R   V +AISR+KK
Sbjct: 1   MEALLLSFPSSIP--SPHSQTLTLARPTNPLLSLTPSH--GRSRGTRLPTVRSAISRSKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVE VKQ L++C+LLAGI YKGFTVKQFQ+LRRSLPE +KLIVAKNTLV KAIEGT W
Sbjct: 61  EETVEAVKQNLDNCFLLAGISYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTKW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EAL+PCM GMN WLFVHSEEIPAAIKPYRDFQKE+KLE+NDFTGAVFEGK+YGP +FK L
Sbjct: 121 EALRPCMTGMNAWLFVHSEEIPAAIKPYRDFQKERKLEENDFTGAVFEGKFYGPGDFKQL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGGGGG 235
           ETMP+RAE+YAK+LG LQAPA XXXXXXXXXXXXXXXXXXX V KLE++GGGGG
Sbjct: 181 ETMPTRAEIYAKLLGSLQAPAXXXXXXXXXXXXXXXXXXXXYVNKLEQEGGGGG 230

[Close]

BLAST of CsGy5G006310 vs. TrEMBL
Match: tr|A0A200R692|A0A200R692_9MAGN (Ribosomal protein L10/acidic P0 OS=Macleaya cordata OX=56857 GN=BVC80_1835g631 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 8.8e-74
Identity = 169/231 (73.16%), Postives = 194/231 (83.98%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60
           MEASL T  S  PPSS +  + +  +P      S P  +  +TRH   ++  AAISRTKK
Sbjct: 1   MEASLCTLQSSKPPSSKTLSLSSFTKPLFITKTSFP--TPYKTRHLPSIR--AAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVE VK+QLE+CYL+AGIKYKG TVKQFQ+LRR+LPE+  L+VAKNTLV KAIEGT W
Sbjct: 61  EETVENVKKQLENCYLIAGIKYKGLTVKQFQDLRRALPESVNLVVAKNTLVGKAIEGTPW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMN WLFVH+EEIP A+KPYR+FQ+EKKLEDNDFTGAVFEGK+YGPD+FKAL
Sbjct: 121 EALKPCMKGMNAWLFVHTEEIPGALKPYRNFQREKKLEDNDFTGAVFEGKFYGPDDFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQGG 232
           ETMP+RAE+YAK+LG LQ+PASXXXXXXXXXXXXXXXXXXXXVQKLEE GG
Sbjct: 181 ETMPTRAEIYAKLLGSLQSPASXXXXXXXXXXXXXXXXXXXXVQKLEESGG 227

The following BLAST results are available for this feature:

BLAST of CsGy5G006310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143603.1	6.5e-113	100.00	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis sativus] >KGN50478....	[more]
XP_008445837.1	2.8e-108	97.02	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo]	[more]
XP_022990377.1	1.7e-100	83.83	50S ribosomal protein L10, chloroplastic [Cucurbita maxima]	[more]
XP_023523503.1	6.3e-100	83.40	50S ribosomal protein L10, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022943219.1	1.9e-96	82.17	50S ribosomal protein L10, chloroplastic [Cucurbita moschata]	[more]

BLAST of CsGy5G006310 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13510.1	1.2e-65	63.68	Ribosomal protein L10 family protein	[more]
AT3G12370.1	2.1e-44	63.24	Ribosomal protein L10 family protein	[more]

BLAST of CsGy5G006310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O80362\|RK10_TOBAC	9.0e-74	65.47	50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 P...	[more]
sp\|Q9FY50\|RK10_ARATH	2.2e-64	63.68	50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
sp\|P82139\|RK10_SPIOL	8.5e-64	62.66	50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 P...	[more]
sp\|Q119S8\|RL10_TRIEI	3.5e-17	36.81	50S ribosomal protein L10 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 ...	[more]
sp\|A9BDG5\|RL10_PROM4	8.6e-16	35.17	50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 ...	[more]

BLAST of CsGy5G006310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KLL5\|A0A0A0KLL5_CUCSA	4.3e-113	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G176000 PE=3 SV=1	[more]
tr\|A0A1S3BDM0\|A0A1S3BDM0_CUCME	1.9e-108	97.02	50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738...	[more]
tr\|A0A067LF88\|A0A067LF88_JATCU	8.5e-77	67.24	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15458 PE=3 SV=1	[more]
tr\|A0A2P5CTD8\|A0A2P5CTD8_9ROSA	9.4e-76	74.36	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_273340 PE=3 SV=1	[more]
tr\|A0A200R692\|A0A200R692_9MAGN	8.8e-74	73.16	Ribosomal protein L10/acidic P0 OS=Macleaya cordata OX=56857 GN=BVC80_1835g631 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

Vocabulary: **INTERPRO**
Term	Definition
IPR022973	Ribosomal_L10
IPR001790	Ribosomal_L10P

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G006310.1	CsGy5G006310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.70.1730		coord: 55..210 e-value: 2.4E-34 score: 120.6
None	No IPR available	PANTHER	PTHR11560	FAMILY NOT NAMED	coord: 36..230
None	No IPR available	CDD	cd05797	Ribosomal_L10	coord: 56..213 e-value: 8.03563E-48 score: 156.125
None	No IPR available	SUPERFAMILY	SSF160369	Ribosomal protein L10-like	coord: 57..225
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 57..152 e-value: 1.3E-20 score: 73.2
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 55..215 score: 18.913

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G006310	Cla020083	Watermelon (97103) v1	cgybwmB401
CsGy5G006310	Csa5G176000	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G006310	MELO3C011720	Melon (DHL92) v3.5.1	cgybmeB310
CsGy5G006310	ClCG02G013790	Watermelon (Charleston Gray)	cgybwcgB347
CsGy5G006310	CSPI05G08950	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G006310	CmaCh04G002590	Cucurbita maxima (Rimu)	cgybcmaB674
CsGy5G006310	CmoCh04G002670	Cucurbita moschata (Rifu)	cgybcmoB652
CsGy5G006310	Lsi04G008230	Bottle gourd (USVL1VR-Ls)	cgyblsiB331
CsGy5G006310	Cp4.1LG01g04370	Cucurbita pepo (Zucchini)	cgybcpeB647
CsGy5G006310	MELO3C011720.2	Melon (DHL92) v3.6.1	cgybmedB310
CsGy5G006310	CsaV3_5G006380	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G006310	Cla97C02G039440	Watermelon (97103) v2	cgybwmbB351
CsGy5G006310	Bhi07G000866	Wax gourd	cgybwgoB488
CsGy5G006310	Carg23761	Silver-seed gourd	carcgybB0854

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G006310	Cucumber (Gy14) v2	cgybcgybB123
CsGy5G006310	Cucumber (Gy14) v2	cgybcgybB095
CsGy5G006310	Cucumber (Gy14) v2	cgybcgybB144
CsGy5G006310	Cucurbita maxima (Rimu)	cgybcmaB673
CsGy5G006310	Cucurbita moschata (Rifu)	cgybcmoB651
CsGy5G006310	Cucurbita pepo (Zucchini)	cgybcpeB646
CsGy5G006310	Cucumber (Chinese Long) v2	cgybcuB218
CsGy5G006310	Melon (DHL92) v3.6.1	cgybmedB345
CsGy5G006310	Silver-seed gourd	carcgybB0832
CsGy5G006310	Cucumber (Chinese Long) v3	cgybcucB220
CsGy5G006310	Cucumber (Chinese Long) v3	cgybcucB226
CsGy5G006310	Cucumber (Chinese Long) v3	cgybcucB234
CsGy5G006310	Watermelon (97103) v2	cgybwmbB335
CsGy5G006310	Watermelon (97103) v2	cgybwmbB358
CsGy5G006310	Wax gourd	cgybwgoB408
CsGy5G006310	Wax gourd	cgybwgoB471