Carg23761 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23761
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L10, putative
Location	Cucurbita_argyrosperma_scaffold_238 : 31838 .. 32542 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCGTCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGCGGGCAGTAA

mRNA sequence

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCGTCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGCGGGCAGTAA

Coding sequence (CDS)

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCGTCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGCGGGCAGTAA

Protein sequence

MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGGQ

Homology

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BLAST of Carg23761 vs. NCBI nr
Match: XP_022943219.1 (50S ribosomal protein L10, chloroplastic [Cucurbita moschata])

HSP 1 Score: 457.2 bits (1175), Expect = 3.3e-125
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGXXXXGQ 235
           MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGXXXXGQ
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGXXXXGQ 234

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BLAST of Carg23761 vs. NCBI nr
Match: XP_023523503.1 (50S ribosomal protein L10, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 451.8 bits (1161), Expect = 1.4e-123
Identity = 226/228 (99.12%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKV+GAISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG 229
           MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG 228

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BLAST of Carg23761 vs. NCBI nr
Match: XP_022990377.1 (50S ribosomal protein L10, chloroplastic [Cucurbita maxima])

HSP 1 Score: 448.7 bits (1153), Expect = 1.2e-122
Identity = 225/228 (98.68%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVA AISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG 229
           MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG 228

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BLAST of Carg23761 vs. NCBI nr
Match: XP_022138927.1 (50S ribosomal protein L10, chloroplastic [Momordica charantia])

HSP 1 Score: 409.8 bits (1052), Expect = 6.1e-111
Identity = 201/228 (88.16%), Postives = 216/228 (94.74%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASLLSFP+ K P SSQ LTLNR TNPLSFSP RHS +QGRH+ CLK++ AISR+KKEE
Sbjct: 1   MEASLLSFPTSKPPPSSQFLTLNRXTNPLSFSPFRHSPHQGRHHHCLKISAAISRSKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           T++TVK+QL+ CYLLAGIKYKGFTV+QFQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TIDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG 229
           MPSRAEVYAKMLGLL GPASSLVGT+QAPAR++LMVLKAYVQKLEEQG
Sbjct: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQG 228

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BLAST of Carg23761 vs. NCBI nr
Match: XP_008445837.1 (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo])

HSP 1 Score: 366.7 bits (940), Expect = 5.9e-98
Identity = 188/228 (82.46%), Postives = 196/228 (85.96%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASL+SF SF  P SSQILTLNRPTNPLSFS  RHSTNQ RHYR LKVA AISRTKKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK+QL+ CYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG 229
           MPSRAEVYAKMLGLL+ PAS                    VQKLEEQG
Sbjct: 181 MPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQG 228

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BLAST of Carg23761 vs. TAIR10
Match: AT5G13510.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 285.4 bits (729), Expect = 3.1e-77
Identity = 144/227 (63.44%), Postives = 175/227 (77.09%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           ME +LLSF S  +P   Q ++   P           ++N   + R   +  A+SR KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTP----------KTSNSPNYPRLPVIRSAVSRNKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVE VK  L+ C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L+ PA +LV TLQAPAR+V+MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

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BLAST of Carg23761 vs. TAIR10
Match: AT3G12370.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-47
Identity = 92/146 (63.01%), Postives = 108/146 (73.97%), Query Frame = 0


Query: 66  KEQLDKCYLLAGIKYKGFTVKQFQELRRSLPE--TSKLIVAKNTLVLKAIEGTTWEALKP 125
           K  L+ C+ + GI Y G +VKQ QELR  L E   +KL+VAKNTLV KA+EGT WE+LKP
Sbjct: 15  KINLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKP 74

Query: 126 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPS 185
           CMKGMN WLFV SE+IPAA+K + +FQKEKKL DN+  GAVFE K Y P D+K +ETMPS
Sbjct: 75  CMKGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPS 134

Query: 186 RAEVYAKMLGLLKGPASSLVGTLQAP 210
           RA+VY  MLG L  PA  LV  LQAP
Sbjct: 135 RADVYGMMLGSLHWPALDLVNALQAP 160

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BLAST of Carg23761 vs. Swiss-Prot
Match: sp|O80362|RK10_TOBAC (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.8e-82
Identity = 155/228 (67.98%), Postives = 186/228 (81.58%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEA+  + PS  T  S      +   N L+     H   + ++   L +  AISRTKKEE
Sbjct: 1   MEATFFTLPS-STSHSYPFSLKSHFNNSLTLPTHPHFKPKSKN---LTIRSAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK+QL+ CYLLAGI YKG TVKQFQELR  LP+T+KL+VAKNTLVLKAIEGT WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFVHSEEIPAA+KPYR FQKEKKLE+NDFTGAVFEGK+YGP++FK LET
Sbjct: 121 LKPCMKGMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG 229
           +P+RAE+YA++LG LKGPAS++VGT+QAPAR+++MVLKAYV+KLEE+G
Sbjct: 181 LPTRAEIYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEG 224

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BLAST of Carg23761 vs. Swiss-Prot
Match: sp|Q9FY50|RK10_ARATH (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 5.6e-76
Identity = 144/227 (63.44%), Postives = 175/227 (77.09%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           ME +LLSF S  +P   Q ++   P           ++N   + R   +  A+SR KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTP----------KTSNSPNYPRLPVIRSAVSRNKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVE VK  L+ C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L+ PA +LV TLQAPAR+V+MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of Carg23761 vs. Swiss-Prot
Match: sp|P82139|RK10_SPIOL (50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 PE=1 SV=2)

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-65
Identity = 122/201 (60.70%), Postives = 147/201 (73.13%), Query Frame = 0


Query: 27  NPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVK 86
           NP   + L       +H     +  AISRTKKEETVETV++ L+ CYLLA I YKGFTVK
Sbjct: 28  NPFKPNNLTFPRTTHKHPTTTTITAAISRTKKEETVETVQKHLENCYLLAAINYKGFTVK 87

Query: 87  QFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPY 146
           QFQ+LR++LPE + LIVAKNTLV KA++ T W A+KPCMKGMN WLFVHSEEIP AIKPY
Sbjct: 88  QFQDLRKALPENTTLIVAKNTLVEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPY 147

Query: 147 RDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTL 206
           R FQKE+KLEDNDFTGA FEGK+YGP + K LETMPS+AE++AK+LG LK P S+     
Sbjct: 148 RTFQKERKLEDNDFTGACFEGKFYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSAXXXXX 207

Query: 207 QAPARDVLMVLKAYVQKLEEQ 228
                      KAY++KLE++
Sbjct: 208 XXXXXXXXXXXKAYIKKLEDE 228

[Close]

BLAST of Carg23761 vs. Swiss-Prot
Match: sp|A5IJW5|RL10_THEP1 (50S ribosomal protein L10 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) OX=390874 GN=rplJ PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 0


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  VE + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEKKSE 179

[Close]

BLAST of Carg23761 vs. Swiss-Prot
Match: sp|B1L937|RL10_THESQ (50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) OX=126740 GN=rplJ PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 0


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  VE + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEKKSE 179

[Close]

BLAST of Carg23761 vs. TrEMBL
Match: tr|A0A1S3BDM0|A0A1S3BDM0_CUCME (50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 3.9e-98
Identity = 188/228 (82.46%), Postives = 196/228 (85.96%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASL+SF SF  P SSQILTLNRPTNPLSFS  RHSTNQ RHYR LKVA AISRTKKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK+QL+ CYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG 229
           MPSRAEVYAKMLGLL+ PAS                    VQKLEEQG
Sbjct: 181 MPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQG 228

[Close]

BLAST of Carg23761 vs. TrEMBL
Match: tr|A0A0A0KLL5|A0A0A0KLL5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G176000 PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 2.5e-97
Identity = 189/230 (82.17%), Postives = 197/230 (85.65%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKV+ AISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+W
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FK L
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG 229
           ETMPSRAEVYAKMLGLL+ PAS                    VQKLEEQG
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASXXXXXXXXXXXXXXXXXXXXVQKLEEQG 230

[Close]

BLAST of Carg23761 vs. TrEMBL
Match: tr|A0A067LF88|A0A067LF88_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15458 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.3e-88
Identity = 175/228 (76.75%), Postives = 190/228 (83.33%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFS-PLRHSTNQGRHYRCLKVAGAISRTKKE 60
           ME +L SFPS K PS SQ L   R TNP SFS PL   T+    YR + +  AISRTKKE
Sbjct: 30  METTLFSFPSSK-PSPSQTLIQFRSTNPFSFSKPLHKPTS----YRPISINSAISRTKKE 89

Query: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWE 120
           ETVETVK QL+ CYLLA IKY GFTVKQFQELRRSLPE+SKLIVAKNTLV KAIEGT WE
Sbjct: 90  ETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEGTQWE 149

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180
           ALKPCMKGMN WLFVH+EEIP AIKPYR+FQKEKKLEDNDFTGAVFEGK+YGP DFK LE
Sbjct: 150 ALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDFKQLE 209

Query: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQ 228
           TMPSRAE+YAKMLG L+ PA  LV TLQAPARDV+MVLKAYV+KLE++
Sbjct: 210 TMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDE 252

[Close]

BLAST of Carg23761 vs. TrEMBL
Match: tr|B9RY97|B9RY97_RICCO (50S ribosomal protein L10, putative OS=Ricinus communis OX=3988 GN=RCOM_0811410 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 6.0e-83
Identity = 159/226 (70.35%), Postives = 181/226 (80.09%), Query Frame = 0


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           ME +LLSFPS KT     +       NP    PL  S  +   Y+ + +  AISRTKKEE
Sbjct: 1   METTLLSFPSSKTSPCQTLTQFRSFRNPF---PLSKSFRKPTSYKPISINSAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK QL+ CYLLA IKY GFTVKQFQ+LRR+LPE+++LIVAKNTLV KAIEGT WEA
Sbjct: 61  TVETVKTQLENCYLLAAIKYTGFTVKQFQDLRRALPESTRLIVAKNTLVFKAIEGTPWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFVHSEEIP A+KPYR FQK+KKLE NDFTGAVFEGK+YGPDDFK LET
Sbjct: 121 LKPCMKGMNAWLFVHSEEIPEALKPYRTFQKDKKLESNDFTGAVFEGKFYGPDDFKQLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
           MPSRAE+YAK+LG L+ P+  LV TLQAPARDV+MVLKAYV+KLE+
Sbjct: 181 MPSRAEIYAKILGALQSPSIGLVSTLQAPARDVIMVLKAYVKKLED 223

[Close]

BLAST of Carg23761 vs. TrEMBL
Match: tr|A0A218WH48|A0A218WH48_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr011471 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.9e-81
Identity = 162/230 (70.43%), Postives = 184/230 (80.00%), Query Frame = 0


Query: 3   ASLLSFPSFKTPSSS----QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKK 62
           A+LLSFPS K PS S      L+L RP NP    P       G+      +  AISR+KK
Sbjct: 5   ATLLSFPSSKPPSQSPHPLSSLSLTRPVNPFLAPP----PASGKARFPSTIRAAISRSKK 64

Query: 63  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTW 122
           EETVETVK QL+ C+ LAGIKY+G TVKQFQELRRSLPE +KLIVAKNTLV KAIEGT +
Sbjct: 65  EETVETVKTQLENCHFLAGIKYQGLTVKQFQELRRSLPENTKLIVAKNTLVYKAIEGTPF 124

Query: 123 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 182
           EALKPCMKGMN WLFVHSEE+PAAIKPYR FQKEKKLE+NDFTG VFEGK+YGP++FK L
Sbjct: 125 EALKPCMKGMNAWLFVHSEEVPAAIKPYRAFQKEKKLENNDFTGGVFEGKFYGPEEFKQL 184

Query: 183 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQG 229
           E+MPSRAE+YA++LG L+ P+  LV TLQAPARDV+MVLKAYVQKLEEQG
Sbjct: 185 ESMPSRAEIYARLLGSLQSPSIGLVSTLQAPARDVVMVLKAYVQKLEEQG 230

The following BLAST results are available for this feature:

BLAST of Carg23761 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943219.1	3.3e-125	100.00	50S ribosomal protein L10, chloroplastic [Cucurbita moschata]	[more]
XP_023523503.1	1.4e-123	99.12	50S ribosomal protein L10, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022990377.1	1.2e-122	98.68	50S ribosomal protein L10, chloroplastic [Cucurbita maxima]	[more]
XP_022138927.1	6.1e-111	88.16	50S ribosomal protein L10, chloroplastic [Momordica charantia]	[more]
XP_008445837.1	5.9e-98	82.46	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo]	[more]

BLAST of Carg23761 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13510.1	3.1e-77	63.44	Ribosomal protein L10 family protein	[more]
AT3G12370.1	2.6e-47	63.01	Ribosomal protein L10 family protein	[more]

BLAST of Carg23761 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O80362\|RK10_TOBAC	1.8e-82	67.98	50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 P...	[more]
sp\|Q9FY50\|RK10_ARATH	5.6e-76	63.44	50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
sp\|P82139\|RK10_SPIOL	1.2e-65	60.70	50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 P...	[more]
sp\|A5IJW5\|RL10_THEP1	3.5e-17	30.90	50S ribosomal protein L10 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 ...	[more]
sp\|B1L937\|RL10_THESQ	3.5e-17	30.90	50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) OX=126740 GN=rplJ PE=3 ...	[more]

BLAST of Carg23761 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BDM0\|A0A1S3BDM0_CUCME	3.9e-98	82.46	50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738...	[more]
tr\|A0A0A0KLL5\|A0A0A0KLL5_CUCSA	2.5e-97	82.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G176000 PE=3 SV=1	[more]
tr\|A0A067LF88\|A0A067LF88_JATCU	1.3e-88	76.75	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15458 PE=3 SV=1	[more]
tr\|B9RY97\|B9RY97_RICCO	6.0e-83	70.35	50S ribosomal protein L10, putative OS=Ricinus communis OX=3988 GN=RCOM_0811410 ...	[more]
tr\|A0A218WH48\|A0A218WH48_PUNGR	1.9e-81	70.43	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr011471 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

Vocabulary: **INTERPRO**
Term	Definition
IPR022973	Ribosomal_L10
IPR001790	Ribosomal_L10P

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23761-RA	Carg23761-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 55..150 e-value: 3.8E-21 score: 75.0
None	No IPR available	GENE3D	G3DSA:3.30.70.1730		coord: 53..198 e-value: 1.7E-34 score: 121.1
None	No IPR available	PANTHER	PTHR11560	FAMILY NOT NAMED	coord: 24..228
None	No IPR available	CDD	cd05797	Ribosomal_L10	coord: 54..211 e-value: 2.32698E-47 score: 154.97
None	No IPR available	SUPERFAMILY	SSF160369	Ribosomal protein L10-like	coord: 55..223
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 53..213 score: 18.493

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23761	Cla020083	Watermelon (97103) v1	carwmB0864
Carg23761	Csa5G176000	Cucumber (Chinese Long) v2	carcuB0880
Carg23761	MELO3C011720	Melon (DHL92) v3.5.1	carmeB0853
Carg23761	ClCG02G013790	Watermelon (Charleston Gray)	carwcgB0838
Carg23761	CSPI05G08950	Wild cucumber (PI 183967)	carcpiB0900
Carg23761	Cucsa.165910	Cucumber (Gy14) v1	carcgyB0985
Carg23761	CmaCh04G002590	Cucurbita maxima (Rimu)	carcmaB1198
Carg23761	CmoCh04G002670	Cucurbita moschata (Rifu)	carcmoB1167
Carg23761	Lsi04G008230	Bottle gourd (USVL1VR-Ls)	carlsiB785
Carg23761	Cp4.1LG01g04370	Cucurbita pepo (Zucchini)	carcpeB1207
Carg23761	CsGy5G006310	Cucumber (Gy14) v2	carcgybB0854
Carg23761	MELO3C011720.2	Melon (DHL92) v3.6.1	carmedB0864
Carg23761	CsaV3_5G006380	Cucumber (Chinese Long) v3	carcucB0904
Carg23761	Cla97C02G039440	Watermelon (97103) v2	carwmbB0902
Carg23761	Bhi07G000866	Wax gourd	carwgoB1008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23761	Silver-seed gourd	carcarB626
Carg23761	Cucurbita maxima (Rimu)	carcmaB1199
Carg23761	Cucurbita moschata (Rifu)	carcmoB1168
Carg23761	Cucurbita pepo (Zucchini)	carcpeB1208
Carg23761	Watermelon (97103) v2	carwmbB0901
Carg23761	Wax gourd	carwgoB1007