Cp4.1LG01g04370 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g04370
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	50S ribosomal protein L10, putative
Location	Cp4.1LG01 : 1286272 .. 1286973 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGTCCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCTCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACCGTTGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTTCTTGGGAAGCCCTAAAGCCGTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGTGGGCAGTAA

mRNA sequence

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGTCCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCTCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACCGTTGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTTCTTGGGAAGCCCTAAAGCCGTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGTGGGCAGTAA

Coding sequence (CDS)

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGTCCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCTCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACCGTTGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTTCTTGGGAAGCCCTAAAGCCGTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGTGGGCAGTAA

Protein sequence

MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ

Homology

[Close]

BLAST of Cp4.1LG01g04370 vs. Swiss-Prot
Match: RK10_TOBAC (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.7e-83
Identity = 156/229 (68.12%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKKEE 60
           MEA+  + PS  T  S      +   N L+     H   + ++   L +  AISRTKKEE
Sbjct: 1   MEATFFTLPS-STSHSYPFSLKSHFNNSLTLPTHPHFKPKSKN---LTIRSAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TVETVK+QL+ CYLLAGI YKG TVKQFQELR  LP+T+KL+VAKNTLVLKAIEGT WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFVHSEEIPAA+KPYR FQKEKKLE+NDFTGAVFEGK+YGP++FK LET
Sbjct: 121 LKPCMKGMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGG 230
           +P+RAE+YA++LG LKGPAS++VGT+QAPAR+++MVLKAYV+KLEE+GG
Sbjct: 181 LPTRAEIYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

[Close]

BLAST of Cp4.1LG01g04370 vs. Swiss-Prot
Match: RK10_ARATH (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.5e-76
Identity = 144/227 (63.44%), Postives = 175/227 (77.09%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKKEE 60
           ME +LLSF S  +P   Q ++   P           ++N   + R   +  A+SR KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTPK----------TSNSPNYPRLPVIRSAVSRNKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TVE VK  L+ C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L+ PA +LV TLQAPAR+V+MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of Cp4.1LG01g04370 vs. Swiss-Prot
Match: RL10_THESQ (50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) GN=rplJ PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 1


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  VE + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEKKSE 179

[Close]

BLAST of Cp4.1LG01g04370 vs. Swiss-Prot
Match: RL10_THEP1 (50S ribosomal protein L10 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplJ PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 1


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  VE + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEKKSE 179

[Close]

BLAST of Cp4.1LG01g04370 vs. Swiss-Prot
Match: RL10_THEMA (50S ribosomal protein L10 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rplJ PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 5.8e-17
Identity = 54/178 (30.34%), Postives = 92/178 (51.69%), Query Frame = 1


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  V+ + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKKSE 179

[Close]

BLAST of Cp4.1LG01g04370 vs. TrEMBL
Match: A0A0A0KLL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G176000 PE=3 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 1.0e-113
Identity = 213/235 (90.64%), Postives = 222/235 (94.47%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKVS AISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FK L
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 234
           ETMPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 235

[Close]

BLAST of Cp4.1LG01g04370 vs. TrEMBL
Match: A0A067LF88_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15458 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 9.4e-91
Identity = 177/231 (76.62%), Postives = 193/231 (83.55%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFS-PLRHSTNQGRHYRCLKVSGAISRTKKE 60
           ME +L SFPS K PS SQ L   R TNP SFS PL   T+    YR + ++ AISRTKKE
Sbjct: 30  METTLFSFPSSK-PSPSQTLIQFRSTNPFSFSKPLHKPTS----YRPISINSAISRTKKE 89

Query: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVK QL+ CYLLA IKY GFTVKQFQELRRSLPE+SKLIVAKNTLV KAIEGT WE
Sbjct: 90  ETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEGTQWE 149

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180
           ALKPCMKGMN WLFVH+EEIP AIKPYR+FQKEKKLEDNDFTGAVFEGK+YGP DFK LE
Sbjct: 150 ALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDFKQLE 209

Query: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGG 231
           TMPSRAE+YAKMLG L+ PA  LV TLQAPARDV+MVLKAYV+KLE++ GG
Sbjct: 210 TMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDESGG 255

[Close]

BLAST of Cp4.1LG01g04370 vs. TrEMBL
Match: M5VZQ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010824mg PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.7e-87
Identity = 170/239 (71.13%), Postives = 192/239 (80.33%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILT-----LNRPTNP---LSFSPLRHSTNQGRHYRCLKVSGA 60
           MEA+L SFPS K PS S   T     L RPTNP   L+  P RH      H+R   +  A
Sbjct: 1   MEATLFSFPSSKPPSPSLTQTQSKTLLTRPTNPFLSLTPRPTRH------HHRLPTIRSA 60

Query: 61  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKA 120
           ISRTKKE+TVET+KE L+ C+LLAGIKYKG TVKQFQ+LR+ LPET+KLIVAKNTLV KA
Sbjct: 61  ISRTKKEQTVETIKENLENCHLLAGIKYKGLTVKQFQDLRKVLPETTKLIVAKNTLVYKA 120

Query: 121 IEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGP 180
           IEGT WEALKPCM GMN WLFVHSEEIP AIKPYRDFQKEKKL+ NDFTGAVFEGK+Y P
Sbjct: 121 IEGTPWEALKPCMTGMNAWLFVHSEEIPPAIKPYRDFQKEKKLDSNDFTGAVFEGKFYAP 180

Query: 181 DDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGG 232
            DFK LETMP+RAE+YAK+LG L  PASSLVGT+QAPAR+++M+LKAYVQKLEE+ GGG
Sbjct: 181 GDFKQLETMPTRAEIYAKLLGTLNSPASSLVGTIQAPARELVMLLKAYVQKLEEESGGG 233

[Close]

BLAST of Cp4.1LG01g04370 vs. TrEMBL
Match: B9RY97_RICCO (50S ribosomal protein L10, putative OS=Ricinus communis GN=RCOM_0811410 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.4e-86
Identity = 163/232 (70.26%), Postives = 187/232 (80.60%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKKEE 60
           ME +LLSFPS KT     +       NP    PL  S  +   Y+ + ++ AISRTKKEE
Sbjct: 1   METTLLSFPSSKTSPCQTLTQFRSFRNPF---PLSKSFRKPTSYKPISINSAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TVETVK QL+ CYLLA IKY GFTVKQFQ+LRR+LPE+++LIVAKNTLV KAIEGT WEA
Sbjct: 61  TVETVKTQLENCYLLAAIKYTGFTVKQFQDLRRALPESTRLIVAKNTLVFKAIEGTPWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFVHSEEIP A+KPYR FQK+KKLE NDFTGAVFEGK+YGPDDFK LET
Sbjct: 121 LKPCMKGMNAWLFVHSEEIPEALKPYRTFQKDKKLESNDFTGAVFEGKFYGPDDFKQLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           MPSRAE+YAK+LG L+ P+  LV TLQAPARDV+MVLKAYV+KLE++ GGGG
Sbjct: 181 MPSRAEIYAKILGALQSPSIGLVSTLQAPARDVIMVLKAYVKKLEDESGGGG 229

[Close]

BLAST of Cp4.1LG01g04370 vs. TrEMBL
Match: B9HU05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22290g PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 3.1e-86
Identity = 171/227 (75.33%), Postives = 187/227 (82.38%), Query Frame = 1


Query: 5   LLSFPSFKTPSSSQILTLNRPTNPLSFS-PLRHSTNQGRHYRCLKVSGAISRTKKEETVE 64
           LLSFPS K P S    T  RP+NP S S P  H T+    +R + +  AISRTKKEETVE
Sbjct: 6   LLSFPSSKPPLSR---THFRPSNPFSLSFPTTHKTSVS--HRPITIKSAISRTKKEETVE 65

Query: 65  TVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKP 124
            VK QL+ CYLLA IKY GFTVKQFQ+ RRSLPE+SKLIVAKNTLV KAIEGT WEALKP
Sbjct: 66  IVKTQLENCYLLAAIKYTGFTVKQFQDFRRSLPESSKLIVAKNTLVYKAIEGTPWEALKP 125

Query: 125 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPS 184
           CM GMN WLFVH+EEIP A+KPYRDFQKEKKLE NDFTGAVFEGK+YGPDDFK LETMPS
Sbjct: 126 CMTGMNAWLFVHTEEIPEALKPYRDFQKEKKLE-NDFTGAVFEGKFYGPDDFKQLETMPS 185

Query: 185 RAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGG 231
           RAE+YAK+LG L+GPA  LVGTLQAPARDV+MVLKAYVQKLEE+ GG
Sbjct: 186 RAEIYAKILGALQGPAIGLVGTLQAPARDVVMVLKAYVQKLEEESGG 226

[Close]

BLAST of Cp4.1LG01g04370 vs. TAIR10
Match: AT5G13510.1 (AT5G13510.1 Ribosomal protein L10 family protein)

HSP 1 Score: 286.6 bits (732), Expect = 1.4e-77
Identity = 144/227 (63.44%), Postives = 175/227 (77.09%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKKEE 60
           ME +LLSF S  +P   Q ++   P           ++N   + R   +  A+SR KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTPK----------TSNSPNYPRLPVIRSAVSRNKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TVE VK  L+ C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L+ PA +LV TLQAPAR+V+MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of Cp4.1LG01g04370 vs. TAIR10
Match: AT3G12370.1 (AT3G12370.1 Ribosomal protein L10 family protein)

HSP 1 Score: 186.4 bits (472), Expect = 2.0e-47
Identity = 92/146 (63.01%), Postives = 108/146 (73.97%), Query Frame = 1


Query: 66  KEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETS--KLIVAKNTLVLKAIEGTSWEALKP 125
           K  L+ C+ + GI Y G +VKQ QELR  L E +  KL+VAKNTLV KA+EGT WE+LKP
Sbjct: 15  KINLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKP 74

Query: 126 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPS 185
           CMKGMN WLFV SE+IPAA+K + +FQKEKKL DN+  GAVFE K Y P D+K +ETMPS
Sbjct: 75  CMKGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPS 134

Query: 186 RAEVYAKMLGLLKGPASSLVGTLQAP 210
           RA+VY  MLG L  PA  LV  LQAP
Sbjct: 135 RADVYGMMLGSLHWPALDLVNALQAP 160

[Close]

BLAST of Cp4.1LG01g04370 vs. NCBI nr
Match: gi|659090098|ref|XP_008445837.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo])

HSP 1 Score: 417.9 bits (1073), Expect = 1.1e-113
Identity = 210/233 (90.13%), Postives = 221/233 (94.85%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKKEE 60
           MEASL+SF SF  P SSQILTLNRPTNPLSFS  RHSTNQ RHYR LKV+ AISRTKKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TVETVK+QL+ CYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 234
           MPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 MPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of Cp4.1LG01g04370 vs. NCBI nr
Match: gi|449451707|ref|XP_004143603.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis sativus])

HSP 1 Score: 417.5 bits (1072), Expect = 1.5e-113
Identity = 213/235 (90.64%), Postives = 222/235 (94.47%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKVS AISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FK L
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 234
           ETMPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 235

[Close]

BLAST of Cp4.1LG01g04370 vs. NCBI nr
Match: gi|802540314|ref|XP_012075838.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas])

HSP 1 Score: 341.3 bits (874), Expect = 1.4e-90
Identity = 177/231 (76.62%), Postives = 193/231 (83.55%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFS-PLRHSTNQGRHYRCLKVSGAISRTKKE 60
           ME +L SFPS K PS SQ L   R TNP SFS PL   T+    YR + ++ AISRTKKE
Sbjct: 30  METTLFSFPSSK-PSPSQTLIQFRSTNPFSFSKPLHKPTS----YRPISINSAISRTKKE 89

Query: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVK QL+ CYLLA IKY GFTVKQFQELRRSLPE+SKLIVAKNTLV KAIEGT WE
Sbjct: 90  ETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEGTQWE 149

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180
           ALKPCMKGMN WLFVH+EEIP AIKPYR+FQKEKKLEDNDFTGAVFEGK+YGP DFK LE
Sbjct: 150 ALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDFKQLE 209

Query: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGG 231
           TMPSRAE+YAKMLG L+ PA  LV TLQAPARDV+MVLKAYV+KLE++ GG
Sbjct: 210 TMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDESGG 255

[Close]

BLAST of Cp4.1LG01g04370 vs. NCBI nr
Match: gi|1009120791|ref|XP_015877114.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 335.1 bits (858), Expect = 9.7e-89
Identity = 172/235 (73.19%), Postives = 199/235 (84.68%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSS-SQILTLNRPTNPL-SFSPLRHSTN-QGRHYRCLKVSGAISRTK 60
           MEA+L SFPS   PS  SQ LTL+RPTNPL SF+P     N Q R +  ++   AISRTK
Sbjct: 1   MEATLFSFPSSSRPSPLSQTLTLSRPTNPLLSFTPNPTRINPQPRRFPSIR--SAISRTK 60

Query: 61  KEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTS 120
           KE+TVETVK+ L+ CYL+AGIKYKGFTVKQFQ+LRRSLPE +KLIVAKNTLV KAIEGT 
Sbjct: 61  KEQTVETVKKNLENCYLIAGIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ 120

Query: 121 WEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKT 180
           WE LKPCM GMN WLFVHSEEIPAAIKPYR FQKE+KL++NDFTGAVFEGK+YGP DFK 
Sbjct: 121 WEVLKPCMTGMNAWLFVHSEEIPAAIKPYRQFQKERKLDENDFTGAVFEGKFYGPGDFKQ 180

Query: 181 LETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           LE+MP+RAE+YAK+LG L+ PA +LVGTLQAPARD++M+L+AYV KLEE+GGGGG
Sbjct: 181 LESMPTRAEIYAKLLGQLQTPALNLVGTLQAPARDLVMLLRAYVNKLEEEGGGGG 233

[Close]

BLAST of Cp4.1LG01g04370 vs. NCBI nr
Match: gi|595797363|ref|XP_007201264.1| (hypothetical protein PRUPE_ppa010824mg [Prunus persica])

HSP 1 Score: 330.5 bits (846), Expect = 2.4e-87
Identity = 170/239 (71.13%), Postives = 192/239 (80.33%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILT-----LNRPTNP---LSFSPLRHSTNQGRHYRCLKVSGA 60
           MEA+L SFPS K PS S   T     L RPTNP   L+  P RH      H+R   +  A
Sbjct: 1   MEATLFSFPSSKPPSPSLTQTQSKTLLTRPTNPFLSLTPRPTRH------HHRLPTIRSA 60

Query: 61  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKA 120
           ISRTKKE+TVET+KE L+ C+LLAGIKYKG TVKQFQ+LR+ LPET+KLIVAKNTLV KA
Sbjct: 61  ISRTKKEQTVETIKENLENCHLLAGIKYKGLTVKQFQDLRKVLPETTKLIVAKNTLVYKA 120

Query: 121 IEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGP 180
           IEGT WEALKPCM GMN WLFVHSEEIP AIKPYRDFQKEKKL+ NDFTGAVFEGK+Y P
Sbjct: 121 IEGTPWEALKPCMTGMNAWLFVHSEEIPPAIKPYRDFQKEKKLDSNDFTGAVFEGKFYAP 180

Query: 181 DDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGG 232
            DFK LETMP+RAE+YAK+LG L  PASSLVGT+QAPAR+++M+LKAYVQKLEE+ GGG
Sbjct: 181 GDFKQLETMPTRAEIYAKLLGTLNSPASSLVGTIQAPARELVMLLKAYVQKLEEESGGG 233

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g04370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK10_TOBAC	2.7e-83	68.12	50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1	[more]
RK10_ARATH	2.5e-76	63.44	50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 S...	[more]
RL10_THESQ	1.5e-17	30.90	50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) GN=rplJ PE=3 SV=1	[more]
RL10_THEP1	1.5e-17	30.90	50S ribosomal protein L10 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 ...	[more]
RL10_THEMA	5.8e-17	30.34	50S ribosomal protein L10 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM...	[more]

BLAST of Cp4.1LG01g04370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLL5_CUCSA	1.0e-113	90.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G176000 PE=3 SV=1	[more]
A0A067LF88_JATCU	9.4e-91	76.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15458 PE=3 SV=1	[more]
M5VZQ9_PRUPE	1.7e-87	71.13	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010824mg PE=3 SV=1	[more]
B9RY97_RICCO	2.4e-86	70.26	50S ribosomal protein L10, putative OS=Ricinus communis GN=RCOM_0811410 PE=3 SV=...	[more]
B9HU05_POPTR	3.1e-86	75.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22290g PE=3 SV=1	[more]

BLAST of Cp4.1LG01g04370 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13510.1	1.4e-77	63.44	Ribosomal protein L10 family protein	[more]
AT3G12370.1	2.0e-47	63.01	Ribosomal protein L10 family protein	[more]

BLAST of Cp4.1LG01g04370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090098\|ref\|XP_008445837.1\|	1.1e-113	90.13	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo]	[more]
gi\|449451707\|ref\|XP_004143603.1\|	1.5e-113	90.64	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis sativus]	[more]
gi\|802540314\|ref\|XP_012075838.1\|	1.4e-90	76.62	PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]	[more]
gi\|1009120791\|ref\|XP_015877114.1\|	9.7e-89	73.19	PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|595797363\|ref\|XP_007201264.1\|	2.4e-87	71.13	hypothetical protein PRUPE_ppa010824mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR022973	Ribosomal_L10
IPR001790	Ribosomal_L10P

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g04370.1	Cp4.1LG01g04370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 55..151 score: 3.1
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 53..213 score: 18
None	No IPR available	PANTHER	PTHR11560	FAMILY NOT NAMED	coord: 51..229 score: 2.7
None	No IPR available	unknown	SSF160369	Ribosomal protein L10-like	coord: 55..223 score: 4.84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g04370	Cucsa.165910	Cucumber (Gy14) v1	cgycpeB0457
Cp4.1LG01g04370	CmaCh04G002590	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g04370	CmoCh04G002670	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g04370	Cla020083	Watermelon (97103) v1	cpewmB452
Cp4.1LG01g04370	Csa5G176000	Cucumber (Chinese Long) v2	cpecuB438
Cp4.1LG01g04370	MELO3C011720	Melon (DHL92) v3.5.1	cpemeB378
Cp4.1LG01g04370	ClCG02G013790	Watermelon (Charleston Gray)	cpewcgB377
Cp4.1LG01g04370	CSPI05G08950	Wild cucumber (PI 183967)	cpecpiB438
Cp4.1LG01g04370	Lsi04G008230	Bottle gourd (USVL1VR-Ls)	cpelsiB359
Cp4.1LG01g04370	MELO3C011720.2	Melon (DHL92) v3.6.1	cpemedB438
Cp4.1LG01g04370	CsaV3_5G006380	Cucumber (Chinese Long) v3	cpecucB0542
Cp4.1LG01g04370	Bhi07G000866	Wax gourd	cpewgoB0558
Cp4.1LG01g04370	CsGy5G006310	Cucumber (Gy14) v2	cgybcpeB647
Cp4.1LG01g04370	Carg23761	Silver-seed gourd	carcpeB1207

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g04370	Cucurbita pepo (Zucchini)	cpecpeB213
Cp4.1LG01g04370	Cucurbita pepo (Zucchini)	cpecpeB288
Cp4.1LG01g04370	Cucurbita pepo (Zucchini)	cpecpeB374
Cp4.1LG01g04370	Cucurbita pepo (Zucchini)	cpecpeB386
Cp4.1LG01g04370	Cucurbita pepo (Zucchini)	cpecpeB401
Cp4.1LG01g04370	Cucurbita pepo (Zucchini)	cpecpeB395
Cp4.1LG01g04370	Cucurbita pepo (Zucchini)	cpecpeB411
Cp4.1LG01g04370	Cucurbita maxima (Rimu)	cmacpeB315
Cp4.1LG01g04370	Cucurbita maxima (Rimu)	cmacpeB723
Cp4.1LG01g04370	Cucurbita moschata (Rifu)	cmocpeB278
Cp4.1LG01g04370	Cucurbita moschata (Rifu)	cmocpeB675
Cp4.1LG01g04370	Wild cucumber (PI 183967)	cpecpiB445
Cp4.1LG01g04370	Cucumber (Chinese Long) v2	cpecuB444
Cp4.1LG01g04370	Bottle gourd (USVL1VR-Ls)	cpelsiB334
Cp4.1LG01g04370	Watermelon (97103) v1	cpewmB379
Cp4.1LG01g04370	Melon (DHL92) v3.5.1	cpemeB354
Cp4.1LG01g04370	Cucumber (Gy14) v2	cgybcpeB364
Cp4.1LG01g04370	Cucumber (Gy14) v2	cgybcpeB510
Cp4.1LG01g04370	Melon (DHL92) v3.6.1	cpemedB476
Cp4.1LG01g04370	Silver-seed gourd	carcpeB0424
Cp4.1LG01g04370	Silver-seed gourd	carcpeB1179
Cp4.1LG01g04370	Cucumber (Chinese Long) v3	cpecucB0485
Cp4.1LG01g04370	Cucumber (Chinese Long) v3	cpecucB0508
Cp4.1LG01g04370	Cucumber (Chinese Long) v3	cpecucB0550
Cp4.1LG01g04370	Cucumber (Chinese Long) v3	cpecucB0579
Cp4.1LG01g04370	Wax gourd	cpewgoB0487
Cp4.1LG01g04370	Wax gourd	cpewgoB0543
Cp4.1LG01g04370	Wax gourd	cpewgoB0544