CmoCh04G002670.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G002670.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L10
Location	Cmo_Chr04 : 1342812 .. 1343516 (-)
Sequence length	705

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGGGGGCAGTAA

mRNA sequence

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGGGGGCAGTAA

Coding sequence (CDS)

ATGGAAGCCTCTCTTCTAAGCTTTCCCTCATTCAAAACCCCTTCTTCTTCTCAAATTTTAACCCTAAATCGACCCACAAACCCATTATCCTTCTCTCCCCTCCGCCATTCCACCAATCAAGGCCGCCATTATCGCTGTCTCAAGGTCGCCGGCGCTATTTCTCGCACCAAGAAAGAAGAAACTGTCGAAACAGTCAAGGAGCAGCTCGATAAATGCTATCTATTAGCCGGAATCAAGTACAAAGGCTTCACCGTCAAGCAATTTCAAGAACTTCGTCGATCTCTCCCTGAAACCTCGAAACTTATTGTCGCCAAAAACACGCTTGTTCTTAAAGCTATTGAAGGGACTACTTGGGAAGCCCTAAAGCCCTGCATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCTGCCGCAATTAAGCCCTACAGGGATTTCCAGAAGGAGAAAAAGCTCGAGGATAATGATTTCACCGGTGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGACGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGAAGGGTCCGGCATCGAGCTTGGTCGGAACATTACAGGCCCCGGCAAGGGACGTGCTGATGGTTTTAAAGGCCTACGTGCAGAAATTGGAGGAGCAAGGCGGCGGCGGCGGGGGGCAGTAA

Homology

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BLAST of CmoCh04G002670.1 vs. Swiss-Prot
Match: RK10_TOBAC (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.7e-83
Identity = 156/229 (68.12%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEA+  + PS  T  S      +   N L+     H   + ++   L +  AISRTKKEE
Sbjct: 1   MEATFFTLPS-STSHSYPFSLKSHFNNSLTLPTHPHFKPKSKN---LTIRSAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK+QL+ CYLLAGI YKG TVKQFQELR  LP+T+KL+VAKNTLVLKAIEGT WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFVHSEEIPAA+KPYR FQKEKKLE+NDFTGAVFEGK+YGP++FK LET
Sbjct: 121 LKPCMKGMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGG 230
           +P+RAE+YA++LG LKGPAS++VGT+QAPAR+++MVLKAYV+KLEE+GG
Sbjct: 181 LPTRAEIYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

[Close]

BLAST of CmoCh04G002670.1 vs. Swiss-Prot
Match: RK10_ARATH (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.3e-76
Identity = 144/227 (63.44%), Postives = 175/227 (77.09%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           ME +LLSF S  +P   Q ++   P           ++N   + R   +  A+SR KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTPK----------TSNSPNYPRLPVIRSAVSRNKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVE VK  L+ C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L+ PA +LV TLQAPAR+V+MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of CmoCh04G002670.1 vs. Swiss-Prot
Match: RL10_THESQ (50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) GN=rplJ PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 1


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  VE + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEKKSE 179

[Close]

BLAST of CmoCh04G002670.1 vs. Swiss-Prot
Match: RL10_THEP1 (50S ribosomal protein L10 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplJ PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 1


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  VE + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEKKSE 179

[Close]

BLAST of CmoCh04G002670.1 vs. Swiss-Prot
Match: RL10_THEMA (50S ribosomal protein L10 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rplJ PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 5.8e-17
Identity = 54/178 (30.34%), Postives = 92/178 (51.69%), Query Frame = 1


Query: 53  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPET----SKLIVAKNTL 112
           ++R +KE  V+ + E   K  L+    + GFTV    ELR  L E     ++  V KNTL
Sbjct: 2   LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTL 61

Query: 113 VLKAIEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK 172
           +  A++   +E  +  +KG    L+V   +   A+K   +F K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGK 121

Query: 173 YYGPDDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEE 227
            +  ++ + +  +PS+ E+YA ++G +K P + LV  L    R+++ VL A  +K  E
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKKSE 179

[Close]

BLAST of CmoCh04G002670.1 vs. TrEMBL
Match: A0A0A0KLL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G176000 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 2.0e-112
Identity = 210/234 (89.74%), Postives = 221/234 (94.44%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKV+ AISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+W
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FK L
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           ETMPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 234

[Close]

BLAST of CmoCh04G002670.1 vs. TrEMBL
Match: A0A067LF88_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15458 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.8e-90
Identity = 177/231 (76.62%), Postives = 192/231 (83.12%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFS-PLRHSTNQGRHYRCLKVAGAISRTKKE 60
           ME +L SFPS K PS SQ L   R TNP SFS PL   T+    YR + +  AISRTKKE
Sbjct: 30  METTLFSFPSSK-PSPSQTLIQFRSTNPFSFSKPLHKPTS----YRPISINSAISRTKKE 89

Query: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWE 120
           ETVETVK QL+ CYLLA IKY GFTVKQFQELRRSLPE+SKLIVAKNTLV KAIEGT WE
Sbjct: 90  ETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEGTQWE 149

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180
           ALKPCMKGMN WLFVH+EEIP AIKPYR+FQKEKKLEDNDFTGAVFEGK+YGP DFK LE
Sbjct: 150 ALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDFKQLE 209

Query: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGG 231
           TMPSRAE+YAKMLG L+ PA  LV TLQAPARDV+MVLKAYV+KLE++ GG
Sbjct: 210 TMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDESGG 255

[Close]

BLAST of CmoCh04G002670.1 vs. TrEMBL
Match: M5VZQ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010824mg PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.7e-87
Identity = 170/239 (71.13%), Postives = 192/239 (80.33%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILT-----LNRPTNP---LSFSPLRHSTNQGRHYRCLKVAGA 60
           MEA+L SFPS K PS S   T     L RPTNP   L+  P RH      H+R   +  A
Sbjct: 1   MEATLFSFPSSKPPSPSLTQTQSKTLLTRPTNPFLSLTPRPTRH------HHRLPTIRSA 60

Query: 61  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKA 120
           ISRTKKE+TVET+KE L+ C+LLAGIKYKG TVKQFQ+LR+ LPET+KLIVAKNTLV KA
Sbjct: 61  ISRTKKEQTVETIKENLENCHLLAGIKYKGLTVKQFQDLRKVLPETTKLIVAKNTLVYKA 120

Query: 121 IEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGP 180
           IEGT WEALKPCM GMN WLFVHSEEIP AIKPYRDFQKEKKL+ NDFTGAVFEGK+Y P
Sbjct: 121 IEGTPWEALKPCMTGMNAWLFVHSEEIPPAIKPYRDFQKEKKLDSNDFTGAVFEGKFYAP 180

Query: 181 DDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGG 232
            DFK LETMP+RAE+YAK+LG L  PASSLVGT+QAPAR+++M+LKAYVQKLEE+ GGG
Sbjct: 181 GDFKQLETMPTRAEIYAKLLGTLNSPASSLVGTIQAPARELVMLLKAYVQKLEEESGGG 233

[Close]

BLAST of CmoCh04G002670.1 vs. TrEMBL
Match: B9RY97_RICCO (50S ribosomal protein L10, putative OS=Ricinus communis GN=RCOM_0811410 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.4e-86
Identity = 164/233 (70.39%), Postives = 187/233 (80.26%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           ME +LLSFPS KT     +       NP    PL  S  +   Y+ + +  AISRTKKEE
Sbjct: 1   METTLLSFPSSKTSPCQTLTQFRSFRNPF---PLSKSFRKPTSYKPISINSAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK QL+ CYLLA IKY GFTVKQFQ+LRR+LPE+++LIVAKNTLV KAIEGT WEA
Sbjct: 61  TVETVKTQLENCYLLAAIKYTGFTVKQFQDLRRALPESTRLIVAKNTLVFKAIEGTPWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFVHSEEIP A+KPYR FQK+KKLE NDFTGAVFEGK+YGPDDFK LET
Sbjct: 121 LKPCMKGMNAWLFVHSEEIPEALKPYRTFQKDKKLESNDFTGAVFEGKFYGPDDFKQLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGG 234
           MPSRAE+YAK+LG L+ P+  LV TLQAPARDV+MVLKAYV+KLE++ GGGGG
Sbjct: 181 MPSRAEIYAKILGALQSPSIGLVSTLQAPARDVIMVLKAYVKKLEDESGGGGG 230

[Close]

BLAST of CmoCh04G002670.1 vs. TrEMBL
Match: B9HU05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22290g PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 4.1e-86
Identity = 171/227 (75.33%), Postives = 187/227 (82.38%), Query Frame = 1


Query: 5   LLSFPSFKTPSSSQILTLNRPTNPLSFS-PLRHSTNQGRHYRCLKVAGAISRTKKEETVE 64
           LLSFPS K P S    T  RP+NP S S P  H T+    +R + +  AISRTKKEETVE
Sbjct: 6   LLSFPSSKPPLSR---THFRPSNPFSLSFPTTHKTSVS--HRPITIKSAISRTKKEETVE 65

Query: 65  TVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEALKP 124
            VK QL+ CYLLA IKY GFTVKQFQ+ RRSLPE+SKLIVAKNTLV KAIEGT WEALKP
Sbjct: 66  IVKTQLENCYLLAAIKYTGFTVKQFQDFRRSLPESSKLIVAKNTLVYKAIEGTPWEALKP 125

Query: 125 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPS 184
           CM GMN WLFVH+EEIP A+KPYRDFQKEKKLE NDFTGAVFEGK+YGPDDFK LETMPS
Sbjct: 126 CMTGMNAWLFVHTEEIPEALKPYRDFQKEKKLE-NDFTGAVFEGKFYGPDDFKQLETMPS 185

Query: 185 RAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGG 231
           RAE+YAK+LG L+GPA  LVGTLQAPARDV+MVLKAYVQKLEE+ GG
Sbjct: 186 RAEIYAKILGALQGPAIGLVGTLQAPARDVVMVLKAYVQKLEEESGG 226

[Close]

BLAST of CmoCh04G002670.1 vs. TAIR10
Match: AT5G13510.1 (AT5G13510.1 Ribosomal protein L10 family protein)

HSP 1 Score: 286.2 bits (731), Expect = 1.8e-77
Identity = 144/227 (63.44%), Postives = 175/227 (77.09%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           ME +LLSF S  +P   Q ++   P           ++N   + R   +  A+SR KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTPK----------TSNSPNYPRLPVIRSAVSRNKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVE VK  L+ C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L+ PA +LV TLQAPAR+V+MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of CmoCh04G002670.1 vs. TAIR10
Match: AT3G12370.1 (AT3G12370.1 Ribosomal protein L10 family protein)

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-47
Identity = 92/146 (63.01%), Postives = 108/146 (73.97%), Query Frame = 1


Query: 66  KEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETS--KLIVAKNTLVLKAIEGTTWEALKP 125
           K  L+ C+ + GI Y G +VKQ QELR  L E +  KL+VAKNTLV KA+EGT WE+LKP
Sbjct: 15  KINLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKP 74

Query: 126 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLETMPS 185
           CMKGMN WLFV SE+IPAA+K + +FQKEKKL DN+  GAVFE K Y P D+K +ETMPS
Sbjct: 75  CMKGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPS 134

Query: 186 RAEVYAKMLGLLKGPASSLVGTLQAP 210
           RA+VY  MLG L  PA  LV  LQAP
Sbjct: 135 RADVYGMMLGSLHWPALDLVNALQAP 160

[Close]

BLAST of CmoCh04G002670.1 vs. NCBI nr
Match: gi|659090098|ref|XP_008445837.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo])

HSP 1 Score: 416.0 bits (1068), Expect = 4.3e-113
Identity = 209/232 (90.09%), Postives = 220/232 (94.83%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60
           MEASL+SF SF  P SSQILTLNRPTNPLSFS  RHSTNQ RHYR LKVA AISRTKKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120
           TVETVK+QL+ CYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           MPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 MPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CmoCh04G002670.1 vs. NCBI nr
Match: gi|449451707|ref|XP_004143603.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis sativus])

HSP 1 Score: 413.3 bits (1061), Expect = 2.8e-112
Identity = 210/234 (89.74%), Postives = 221/234 (94.44%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKV+ AISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+W
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FK L
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233
           ETMPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 234

[Close]

BLAST of CmoCh04G002670.1 vs. NCBI nr
Match: gi|802540314|ref|XP_012075838.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas])

HSP 1 Score: 339.7 bits (870), Expect = 4.0e-90
Identity = 177/231 (76.62%), Postives = 192/231 (83.12%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFS-PLRHSTNQGRHYRCLKVAGAISRTKKE 60
           ME +L SFPS K PS SQ L   R TNP SFS PL   T+    YR + +  AISRTKKE
Sbjct: 30  METTLFSFPSSK-PSPSQTLIQFRSTNPFSFSKPLHKPTS----YRPISINSAISRTKKE 89

Query: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWE 120
           ETVETVK QL+ CYLLA IKY GFTVKQFQELRRSLPE+SKLIVAKNTLV KAIEGT WE
Sbjct: 90  ETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEGTQWE 149

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180
           ALKPCMKGMN WLFVH+EEIP AIKPYR+FQKEKKLEDNDFTGAVFEGK+YGP DFK LE
Sbjct: 150 ALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDFKQLE 209

Query: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGG 231
           TMPSRAE+YAKMLG L+ PA  LV TLQAPARDV+MVLKAYV+KLE++ GG
Sbjct: 210 TMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDESGG 255

[Close]

BLAST of CmoCh04G002670.1 vs. NCBI nr
Match: gi|1009120791|ref|XP_015877114.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 338.2 bits (866), Expect = 1.2e-89
Identity = 174/237 (73.42%), Postives = 201/237 (84.81%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSS-SQILTLNRPTNPL-SFSPLRHSTN-QGRHYRCLKVAGAISRTK 60
           MEA+L SFPS   PS  SQ LTL+RPTNPL SF+P     N Q R +  ++   AISRTK
Sbjct: 1   MEATLFSFPSSSRPSPLSQTLTLSRPTNPLLSFTPNPTRINPQPRRFPSIR--SAISRTK 60

Query: 61  KEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTT 120
           KE+TVETVK+ L+ CYL+AGIKYKGFTVKQFQ+LRRSLPE +KLIVAKNTLV KAIEGT 
Sbjct: 61  KEQTVETVKKNLENCYLIAGIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ 120

Query: 121 WEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKT 180
           WE LKPCM GMN WLFVHSEEIPAAIKPYR FQKE+KL++NDFTGAVFEGK+YGP DFK 
Sbjct: 121 WEVLKPCMTGMNAWLFVHSEEIPAAIKPYRQFQKERKLDENDFTGAVFEGKFYGPGDFKQ 180

Query: 181 LETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGGQ 235
           LE+MP+RAE+YAK+LG L+ PA +LVGTLQAPARD++M+L+AYV KLEE+GGGGGGQ
Sbjct: 181 LESMPTRAEIYAKLLGQLQTPALNLVGTLQAPARDLVMLLRAYVNKLEEEGGGGGGQ 235

[Close]

BLAST of CmoCh04G002670.1 vs. NCBI nr
Match: gi|595797363|ref|XP_007201264.1| (hypothetical protein PRUPE_ppa010824mg [Prunus persica])

HSP 1 Score: 330.5 bits (846), Expect = 2.4e-87
Identity = 170/239 (71.13%), Postives = 192/239 (80.33%), Query Frame = 1


Query: 1   MEASLLSFPSFKTPSSSQILT-----LNRPTNP---LSFSPLRHSTNQGRHYRCLKVAGA 60
           MEA+L SFPS K PS S   T     L RPTNP   L+  P RH      H+R   +  A
Sbjct: 1   MEATLFSFPSSKPPSPSLTQTQSKTLLTRPTNPFLSLTPRPTRH------HHRLPTIRSA 60

Query: 61  ISRTKKEETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKA 120
           ISRTKKE+TVET+KE L+ C+LLAGIKYKG TVKQFQ+LR+ LPET+KLIVAKNTLV KA
Sbjct: 61  ISRTKKEQTVETIKENLENCHLLAGIKYKGLTVKQFQDLRKVLPETTKLIVAKNTLVYKA 120

Query: 121 IEGTTWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGP 180
           IEGT WEALKPCM GMN WLFVHSEEIP AIKPYRDFQKEKKL+ NDFTGAVFEGK+Y P
Sbjct: 121 IEGTPWEALKPCMTGMNAWLFVHSEEIPPAIKPYRDFQKEKKLDSNDFTGAVFEGKFYAP 180

Query: 181 DDFKTLETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGG 232
            DFK LETMP+RAE+YAK+LG L  PASSLVGT+QAPAR+++M+LKAYVQKLEE+ GGG
Sbjct: 181 GDFKQLETMPTRAEIYAKLLGTLNSPASSLVGTIQAPARELVMLLKAYVQKLEEESGGG 233

The following BLAST results are available for this feature:

BLAST of CmoCh04G002670.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK10_TOBAC	2.7e-83	68.12	50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1	[more]
RK10_ARATH	3.3e-76	63.44	50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 S...	[more]
RL10_THESQ	1.5e-17	30.90	50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) GN=rplJ PE=3 SV=1	[more]
RL10_THEP1	1.5e-17	30.90	50S ribosomal protein L10 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 ...	[more]
RL10_THEMA	5.8e-17	30.34	50S ribosomal protein L10 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM...	[more]

BLAST of CmoCh04G002670.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLL5_CUCSA	2.0e-112	89.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G176000 PE=3 SV=1	[more]
A0A067LF88_JATCU	2.8e-90	76.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15458 PE=3 SV=1	[more]
M5VZQ9_PRUPE	1.7e-87	71.13	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010824mg PE=3 SV=1	[more]
B9RY97_RICCO	1.4e-86	70.39	50S ribosomal protein L10, putative OS=Ricinus communis GN=RCOM_0811410 PE=3 SV=...	[more]
B9HU05_POPTR	4.1e-86	75.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22290g PE=3 SV=1	[more]

BLAST of CmoCh04G002670.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13510.1	1.8e-77	63.44	Ribosomal protein L10 family protein	[more]
AT3G12370.1	2.6e-47	63.01	Ribosomal protein L10 family protein	[more]

BLAST of CmoCh04G002670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090098\|ref\|XP_008445837.1\|	4.3e-113	90.09	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo]	[more]
gi\|449451707\|ref\|XP_004143603.1\|	2.8e-112	89.74	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis sativus]	[more]
gi\|802540314\|ref\|XP_012075838.1\|	4.0e-90	76.62	PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]	[more]
gi\|1009120791\|ref\|XP_015877114.1\|	1.2e-89	73.42	PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|595797363\|ref\|XP_007201264.1\|	2.4e-87	71.13	hypothetical protein PRUPE_ppa010824mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001790	Ribosomal_L10P
IPR022973	Ribosomal_L10

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G002670	CmoCh04G002670	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G002670.1	CmoCh04G002670.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G002670.1.CDS.1	CmoCh04G002670.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G002670.1.exon.1	CmoCh04G002670.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 55..151 score: 6.3
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 53..213 score: 18
None	No IPR available	PANTHER	PTHR11560	FAMILY NOT NAMED	coord: 49..229 score: 3.1
None	No IPR available	unknown	SSF160369	Ribosomal protein L10-like	coord: 55..223 score: 9.29