CmoCh03G011060 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G011060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ring finger protein, putative
Location	Cmo_Chr03 : 8935077 .. 8935592 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACAGCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGCAGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

mRNA sequence

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACAGCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGCAGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Coding sequence (CDS)

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACAGCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGCAGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Homology

[Close]

BLAST of CmoCh03G011060 vs. Swiss-Prot
Match: ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-49
Identity = 105/163 (64.42%), Postives = 125/163 (76.69%), Query Frame = 1


Query: 7   DSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSST-SVVERNSNRSPPQ 66
           D  G L +++IGGF YGIGVS+G+L+LITTI L SYYCTRN LSS+ S   ++S R    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHH 110

Query: 67  AEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDC 126
                  VV  GLD++TI+SYPK+LYSEAK     ++ASCC+ICL DYK  ++LR LPDC
Sbjct: 111 HHHVIIDVVP-GLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLRQLPDC 170

Query: 127 GHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
            HLFHLKCID WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 171 NHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of CmoCh03G011060 vs. Swiss-Prot
Match: ATL71_ARATH (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-42
Identity = 92/183 (50.27%), Postives = 121/183 (66.12%), Query Frame = 1


Query: 8   SGGFLSSNN-IGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L++ + +GG  YGIGVS+G+L+LITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAAAVVDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +   V  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]

BLAST of CmoCh03G011060 vs. Swiss-Prot
Match: ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-30
Identity = 77/175 (44.00%), Postives = 103/175 (58.86%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNR------------SPPQA 78
           GFGY I ++LG L+L++T+LL+SY C R+    T+ VE   +R            +    
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  EGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASC----------CSICLADYKNS 138
           E   A  V VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK +
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKEA 153

Query: 139 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
            +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P    TPLSTPL+E VPL+
Sbjct: 154 EMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of CmoCh03G011060 vs. Swiss-Prot
Match: ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26
Identity = 61/149 (40.94%), Postives = 92/149 (61.74%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAAAVVDVGL 78
           G GYGI +++ +L+LI+ I+LASY C R+  +       +     P      AA V +GL
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSP----AAEVKLGL 71

Query: 79  DQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWL 138
           D+  I+SYP+++  +++ L   ++  C SICL DY+    +R +P+C H FH  C+D WL
Sbjct: 72  DRPVIESYPRIVLGDSRRLPRPNNGPC-SICLCDYEAREPVRCIPECNHCFHTDCVDEWL 131

Query: 139 RLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           R   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 132 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of CmoCh03G011060 vs. Swiss-Prot
Match: ATL68_ARATH (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-24
Identity = 67/177 (37.85%), Postives = 96/177 (54.24%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEG---------- 78
           G GY I ++LG L+LI+TI+L+SY C R      S    N+N +   ++           
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  ------EAAAVVDVGLDQETIKSYPKLLYSE--AKLLKNDS------SASCCSICLADYK 138
                 E+  VV  GLD   I SYPK  +++    ++  D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
              +LR +P+C H FH+ C+D WL+L+ +CPVCR SP+P    TP STPL+E VPL+
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

[Close]

BLAST of CmoCh03G011060 vs. TrEMBL
Match: A0A0A0KIW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476670 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.2e-78
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 1


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSS+ V     N
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVVQRTPPN 60

Query: 61  RSPPQAEGEA-AAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA GE  + VVD+GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of CmoCh03G011060 vs. TrEMBL
Match: M5VS68_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012474mg PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 8.0e-63
Identity = 124/170 (72.94%), Postives = 138/170 (81.18%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN-R 62
           N T+DSGGFL SNNIGGFGYGIGVS+G+L+LITTI LASY+CTR          RN+N  
Sbjct: 2   NNTSDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTQQPPAPATHRNNNIL 61

Query: 63  SPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRA 122
            PP  +     VVD+GLD  TI+SYPK+LYSEAKL K DS+ASCCSICLADYK ++ LR 
Sbjct: 62  DPPDLQN---FVVDIGLDDSTIESYPKMLYSEAKLQKTDSTASCCSICLADYKGTDTLRL 121

Query: 123 LPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           LPDC HLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLASRRD
Sbjct: 122 LPDCKHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRRD 168

[Close]

BLAST of CmoCh03G011060 vs. TrEMBL
Match: A0A061EV28_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_023049 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.8e-60
Identity = 122/172 (70.93%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRS 62
           N T DSGGFL SNNIGGFGYGIGVS+G+L+LITTI LASY+CTR              ++
Sbjct: 2   NSTTDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTP----------PPQA 61

Query: 63  PPQAEGEA-----AAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSN 122
           PP+A  E      + VVD+GLD+ETIKSYPKLLYSEAKL   DS++SCCSICLADYK+S+
Sbjct: 62  PPRARQEPTLDPESLVVDLGLDEETIKSYPKLLYSEAKLHNKDSTSSCCSICLADYKSSD 121

Query: 123 VLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASR 170
            LR LPDC HLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPL+SR
Sbjct: 122 TLRLLPDCNHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLSSR 163

[Close]

BLAST of CmoCh03G011060 vs. TrEMBL
Match: W9S683_9ROSA (RING-H2 finger protein ATL70 OS=Morus notabilis GN=L484_016910 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-59
Identity = 120/172 (69.77%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGL--SSTSVVERNSN 62
           N T D+GGFL SN+IGGFGYGIGVS+G+L+LIT+I LASY+CTR+ L  SS +   RN  
Sbjct: 2   NATGDTGGFLGSNDIGGFGYGIGVSVGILLLITSITLASYFCTRSQLPPSSAAAARRNVG 61

Query: 63  RSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLK-NDSSASCCSICLADYKNSNVL 122
            +          V+DVGLD+ TIKSYPKL YSEAKL K N +S+SCCSICLADYK +++L
Sbjct: 62  PANNPEPNLPNFVIDVGLDEATIKSYPKLPYSEAKLHKANSTSSSCCSICLADYKTTDML 121

Query: 123 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFH+KC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLA+RRD
Sbjct: 122 RQLPDCGHLFHVKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLATRRD 173

[Close]

BLAST of CmoCh03G011060 vs. TrEMBL
Match: B9SDK9_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_0421540 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-59
Identity = 115/172 (66.86%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVE---RNS 62
           N T+  GGFL SN+IGGFGYGIGVS+G+L+LITTI LASY+CTRN       ++   RN 
Sbjct: 2   NNTSSGGGFLGSNDIGGFGYGIGVSIGILLLITTITLASYFCTRNHQQQQQSMQTRRRNR 61

Query: 63  NRSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 122
           +  PP    +   VV+VG+D+ T+K+YPKLLYS+AKL   D++A+CCSICLADYK++++L
Sbjct: 62  SEEPPDDRLQDI-VVEVGIDEATLKNYPKLLYSQAKLHNTDTTATCCSICLADYKSTDML 121

Query: 123 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCR SP+PTPLSTPLAE VPLASRRD
Sbjct: 122 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRNSPLPTPLSTPLAEVVPLASRRD 172

[Close]

BLAST of CmoCh03G011060 vs. TAIR10
Match: AT2G35910.1 (AT2G35910.1 RING/U-box superfamily protein)

HSP 1 Score: 197.6 bits (501), Expect = 6.3e-51
Identity = 105/163 (64.42%), Postives = 125/163 (76.69%), Query Frame = 1


Query: 7   DSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSST-SVVERNSNRSPPQ 66
           D  G L +++IGGF YGIGVS+G+L+LITTI L SYYCTRN LSS+ S   ++S R    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHH 110

Query: 67  AEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDC 126
                  VV  GLD++TI+SYPK+LYSEAK     ++ASCC+ICL DYK  ++LR LPDC
Sbjct: 111 HHHVIIDVVP-GLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLRQLPDC 170

Query: 127 GHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
            HLFHLKCID WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 171 NHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of CmoCh03G011060 vs. TAIR10
Match: AT5G06490.1 (AT5G06490.1 RING/U-box superfamily protein)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-43
Identity = 92/183 (50.27%), Postives = 121/183 (66.12%), Query Frame = 1


Query: 8   SGGFLSSNN-IGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L++ + +GG  YGIGVS+G+L+LITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAAAVVDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +   V  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]

BLAST of CmoCh03G011060 vs. TAIR10
Match: AT2G46160.1 (AT2G46160.1 RING/U-box superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-31
Identity = 77/175 (44.00%), Postives = 103/175 (58.86%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNR------------SPPQA 78
           GFGY I ++LG L+L++T+LL+SY C R+    T+ VE   +R            +    
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  EGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASC----------CSICLADYKNS 138
           E   A  V VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK +
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKEA 153

Query: 139 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
            +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P    TPLSTPL+E VPL+
Sbjct: 154 EMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of CmoCh03G011060 vs. TAIR10
Match: AT5G07040.1 (AT5G07040.1 RING/U-box superfamily protein)

HSP 1 Score: 121.3 bits (303), Expect = 5.7e-28
Identity = 61/149 (40.94%), Postives = 92/149 (61.74%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAAAVVDVGL 78
           G GYGI +++ +L+LI+ I+LASY C R+  +       +     P      AA V +GL
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSP----AAEVKLGL 71

Query: 79  DQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWL 138
           D+  I+SYP+++  +++ L   ++  C SICL DY+    +R +P+C H FH  C+D WL
Sbjct: 72  DRPVIESYPRIVLGDSRRLPRPNNGPC-SICLCDYEAREPVRCIPECNHCFHTDCVDEWL 131

Query: 139 RLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           R   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 132 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of CmoCh03G011060 vs. TAIR10
Match: AT3G61550.1 (AT3G61550.1 RING/U-box superfamily protein)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-25
Identity = 67/177 (37.85%), Postives = 96/177 (54.24%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEG---------- 78
           G GY I ++LG L+LI+TI+L+SY C R      S    N+N +   ++           
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  ------EAAAVVDVGLDQETIKSYPKLLYSE--AKLLKNDS------SASCCSICLADYK 138
                 E+  VV  GLD   I SYPK  +++    ++  D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
              +LR +P+C H FH+ C+D WL+L+ +CPVCR SP+P    TP STPL+E VPL+
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

[Close]

BLAST of CmoCh03G011060 vs. NCBI nr
Match: gi|659125321|ref|XP_008462625.1| (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 149/172 (86.63%), Postives = 162/172 (94.19%), Query Frame = 1


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-AAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E  + VV++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of CmoCh03G011060 vs. NCBI nr
Match: gi|449451185|ref|XP_004143342.1| (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 7.4e-78
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 1


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSS+ V     N
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVVQRTPPN 60

Query: 61  RSPPQAEGEA-AAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA GE  + VVD+GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of CmoCh03G011060 vs. NCBI nr
Match: gi|595807800|ref|XP_007202672.1| (hypothetical protein PRUPE_ppa012474mg [Prunus persica])

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62
Identity = 124/170 (72.94%), Postives = 138/170 (81.18%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN-R 62
           N T+DSGGFL SNNIGGFGYGIGVS+G+L+LITTI LASY+CTR          RN+N  
Sbjct: 2   NNTSDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTQQPPAPATHRNNNIL 61

Query: 63  SPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRA 122
            PP  +     VVD+GLD  TI+SYPK+LYSEAKL K DS+ASCCSICLADYK ++ LR 
Sbjct: 62  DPPDLQN---FVVDIGLDDSTIESYPKMLYSEAKLQKTDSTASCCSICLADYKGTDTLRL 121

Query: 123 LPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           LPDC HLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLASRRD
Sbjct: 122 LPDCKHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRRD 168

[Close]

BLAST of CmoCh03G011060 vs. NCBI nr
Match: gi|645271779|ref|XP_008241078.1| (PREDICTED: RING-H2 finger protein ATL70 [Prunus mume])

HSP 1 Score: 245.7 bits (626), Expect = 5.7e-62
Identity = 123/170 (72.35%), Postives = 137/170 (80.59%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNR- 62
           N T+DSGGFL SNNIGGFGYGIGVS+G+L+LITTI LASY+CTR          RN+N  
Sbjct: 2   NNTSDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTQQPPAPATHRNNNTL 61

Query: 63  SPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRA 122
            PP  +     VVD+GLD  TI+SYPK+LYSEAKL K  S+ASCCSICLADYK ++ LR 
Sbjct: 62  DPPDLQN---FVVDIGLDDSTIESYPKMLYSEAKLQKTGSTASCCSICLADYKGTDTLRL 121

Query: 123 LPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           LPDC HLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLASRRD
Sbjct: 122 LPDCKHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRRD 168

[Close]

BLAST of CmoCh03G011060 vs. NCBI nr
Match: gi|694319846|ref|XP_009348829.1| (PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri])

HSP 1 Score: 241.1 bits (614), Expect = 1.4e-60
Identity = 124/171 (72.51%), Postives = 137/171 (80.12%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRS 62
           N T+DSGGFL SNNIG FGYGIGVS+G+L+LITTI LASY+C R          RN+  +
Sbjct: 2   NATSDSGGFLGSNNIGSFGYGIGVSVGVLLLITTITLASYFCARTQQPPAPPTRRNAGDA 61

Query: 63  --PPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 122
             PP  E     VVD+GLD  TI+SYPKLLYSEAKL   DS+ASCCSICLADYKNS++LR
Sbjct: 62  MDPPGVEN---FVVDIGLDDNTIQSYPKLLYSEAKLQMKDSTASCCSICLADYKNSDMLR 121

Query: 123 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
            LPDC HLFHLKCIDPWLRL+PTCPVCRTSPIPTPLSTPLAE VPLASRRD
Sbjct: 122 LLPDCRHLFHLKCIDPWLRLNPTCPVCRTSPIPTPLSTPLAEVVPLASRRD 169

The following BLAST results are available for this feature:

BLAST of CmoCh03G011060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL70_ARATH	1.1e-49	64.42	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1	[more]
ATL71_ARATH	2.2e-42	50.27	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1	[more]
ATL67_ARATH	4.4e-30	44.00	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1	[more]
ATL69_ARATH	1.0e-26	40.94	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1	[more]
ATL68_ARATH	2.1e-24	37.85	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1	[more]

BLAST of CmoCh03G011060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIW7_CUCSA	5.2e-78	87.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476670 PE=4 SV=1	[more]
M5VS68_PRUPE	8.0e-63	72.94	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012474mg PE=4 SV=1	[more]
A0A061EV28_THECC	2.8e-60	70.93	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_023049 PE=4 SV=1	[more]
W9S683_9ROSA	3.1e-59	69.77	RING-H2 finger protein ATL70 OS=Morus notabilis GN=L484_016910 PE=4 SV=1	[more]
B9SDK9_RICCO	4.1e-59	66.86	Ring finger protein, putative OS=Ricinus communis GN=RCOM_0421540 PE=4 SV=1	[more]

BLAST of CmoCh03G011060 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35910.1	6.3e-51	64.42	RING/U-box superfamily protein	[more]
AT5G06490.1	1.3e-43	50.27	RING/U-box superfamily protein	[more]
AT2G46160.1	2.5e-31	44.00	RING/U-box superfamily protein	[more]
AT5G07040.1	5.7e-28	40.94	RING/U-box superfamily protein	[more]
AT3G61550.1	1.2e-25	37.85	RING/U-box superfamily protein	[more]

BLAST of CmoCh03G011060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125321\|ref\|XP_008462625.1\|	1.5e-78	86.63	PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo]	[more]
gi\|449451185\|ref\|XP_004143342.1\|	7.4e-78	87.21	PREDICTED: RING-H2 finger protein ATL70-like [Cucumis sativus]	[more]
gi\|595807800\|ref\|XP_007202672.1\|	1.1e-62	72.94	hypothetical protein PRUPE_ppa012474mg [Prunus persica]	[more]
gi\|645271779\|ref\|XP_008241078.1\|	5.7e-62	72.35	PREDICTED: RING-H2 finger protein ATL70 [Prunus mume]	[more]
gi\|694319846\|ref\|XP_009348829.1\|	1.4e-60	72.51	PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0001666	response to hypoxia
biological_process	GO:0042550	photosystem I stabilization
biological_process	GO:0009877	nodulation
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0019375	galactolipid biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0016117	carotenoid biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009707	chloroplast outer membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0043661	peribacteroid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046481	digalactosyldiacylglycerol synthase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G011060.1	CmoCh03G011060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 105..148 score: 7.2
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 106..147 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 106..148 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 102..149 score: 1.9
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 10..171 score: 1.1
None	No IPR available	PANTHER	PTHR14155:SF90	SUBFAMILY NOT NAMED	coord: 10..171 score: 1.1
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 82..153 score: 1.11

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G011060	Cucsa.083830	Cucumber (Gy14) v1	cgycmoB0148
CmoCh03G011060	Cucsa.242010	Cucumber (Gy14) v1	cgycmoB0680
CmoCh03G011060	CmaCh14G003690	Cucurbita maxima (Rimu)	cmacmoB263
CmoCh03G011060	CmaCh03G011170	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G011060	CmaCh07G008210	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G011060	Cla008404	Watermelon (97103) v1	cmowmB620
CmoCh03G011060	Csa6G476670	Cucumber (Chinese Long) v2	cmocuB668
CmoCh03G011060	MELO3C009554	Melon (DHL92) v3.5.1	cmomeB590
CmoCh03G011060	MELO3C024590	Melon (DHL92) v3.5.1	cmomeB598
CmoCh03G011060	ClCG01G015050	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G011060	ClCG10G018180	Watermelon (Charleston Gray)	cmowcgB568
CmoCh03G011060	CSPI06G26130	Wild cucumber (PI 183967)	cmocpiB679
CmoCh03G011060	CSPI03G35770	Wild cucumber (PI 183967)	cmocpiB659
CmoCh03G011060	Lsi03G018060	Bottle gourd (USVL1VR-Ls)	cmolsiB597
CmoCh03G011060	Lsi01G011800	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G011060	Cp4.1LG10g03770	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G011060	Cp4.1LG19g04800	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G011060	Cp4.1LG03g00390	Cucurbita pepo (Zucchini)	cmocpeB635
CmoCh03G011060	MELO3C024590.2	Melon (DHL92) v3.6.1	cmomedB687
CmoCh03G011060	MELO3C009554.2	Melon (DHL92) v3.6.1	cmomedB676
CmoCh03G011060	CsaV3_3G038130	Cucumber (Chinese Long) v3	cmocucB0771
CmoCh03G011060	CsaV3_6G041160	Cucumber (Chinese Long) v3	cmocucB0794
CmoCh03G011060	Cla97C01G014050	Watermelon (97103) v2	cmowmbB642
CmoCh03G011060	Cla97C10G201150	Watermelon (97103) v2	cmowmbB643
CmoCh03G011060	Bhi03G001373	Wax gourd	cmowgoB0784
CmoCh03G011060	CsGy6G025510	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G011060	CsGy3G033240	Cucumber (Gy14) v2	cgybcmoB384
CmoCh03G011060	Carg05332	Silver-seed gourd	carcmoB1095
CmoCh03G011060	Carg03615	Silver-seed gourd	carcmoB0349
CmoCh03G011060	Carg10515	Silver-seed gourd	carcmoB0336

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh03G011060	CmoCh14G003690	Cucurbita moschata (Rifu)	cmocmoB217
CmoCh03G011060	CmoCh07G008490	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G011060	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G011060	Cucumber (Chinese Long) v2	cmocuB670