CmoCh03G011060.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G011060.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ring finger protein, putative
Location	Cmo_Chr03 : 8935077 .. 8935592 (-)
Sequence length	516

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACAGCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGCAGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

mRNA sequence

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACAGCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGCAGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Coding sequence (CDS)

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACAGCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGCAGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Homology

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BLAST of CmoCh03G011060.1 vs. Swiss-Prot
Match: ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-49
Identity = 105/163 (64.42%), Postives = 125/163 (76.69%), Query Frame = 1


Query: 7   DSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSST-SVVERNSNRSPPQ 66
           D  G L +++IGGF YGIGVS+G+L+LITTI L SYYCTRN LSS+ S   ++S R    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHH 110

Query: 67  AEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDC 126
                  VV  GLD++TI+SYPK+LYSEAK     ++ASCC+ICL DYK  ++LR LPDC
Sbjct: 111 HHHVIIDVVP-GLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLRQLPDC 170

Query: 127 GHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
            HLFHLKCID WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 171 NHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

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BLAST of CmoCh03G011060.1 vs. Swiss-Prot
Match: ATL71_ARATH (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-42
Identity = 92/183 (50.27%), Postives = 121/183 (66.12%), Query Frame = 1


Query: 8   SGGFLSSNN-IGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L++ + +GG  YGIGVS+G+L+LITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAAAVVDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +   V  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]

BLAST of CmoCh03G011060.1 vs. Swiss-Prot
Match: ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-30
Identity = 77/175 (44.00%), Postives = 103/175 (58.86%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNR------------SPPQA 78
           GFGY I ++LG L+L++T+LL+SY C R+    T+ VE   +R            +    
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  EGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASC----------CSICLADYKNS 138
           E   A  V VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK +
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKEA 153

Query: 139 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
            +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P    TPLSTPL+E VPL+
Sbjct: 154 EMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of CmoCh03G011060.1 vs. Swiss-Prot
Match: ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26
Identity = 61/149 (40.94%), Postives = 92/149 (61.74%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAAAVVDVGL 78
           G GYGI +++ +L+LI+ I+LASY C R+  +       +     P      AA V +GL
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSP----AAEVKLGL 71

Query: 79  DQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWL 138
           D+  I+SYP+++  +++ L   ++  C SICL DY+    +R +P+C H FH  C+D WL
Sbjct: 72  DRPVIESYPRIVLGDSRRLPRPNNGPC-SICLCDYEAREPVRCIPECNHCFHTDCVDEWL 131

Query: 139 RLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           R   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 132 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of CmoCh03G011060.1 vs. Swiss-Prot
Match: ATL68_ARATH (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-24
Identity = 67/177 (37.85%), Postives = 96/177 (54.24%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEG---------- 78
           G GY I ++LG L+LI+TI+L+SY C R      S    N+N +   ++           
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  ------EAAAVVDVGLDQETIKSYPKLLYSE--AKLLKNDS------SASCCSICLADYK 138
                 E+  VV  GLD   I SYPK  +++    ++  D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
              +LR +P+C H FH+ C+D WL+L+ +CPVCR SP+P    TP STPL+E VPL+
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

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BLAST of CmoCh03G011060.1 vs. TrEMBL
Match: A0A0A0KIW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476670 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.2e-78
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 1


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSS+ V     N
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVVQRTPPN 60

Query: 61  RSPPQAEGEA-AAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA GE  + VVD+GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

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BLAST of CmoCh03G011060.1 vs. TrEMBL
Match: M5VS68_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012474mg PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 8.0e-63
Identity = 124/170 (72.94%), Postives = 138/170 (81.18%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN-R 62
           N T+DSGGFL SNNIGGFGYGIGVS+G+L+LITTI LASY+CTR          RN+N  
Sbjct: 2   NNTSDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTQQPPAPATHRNNNIL 61

Query: 63  SPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRA 122
            PP  +     VVD+GLD  TI+SYPK+LYSEAKL K DS+ASCCSICLADYK ++ LR 
Sbjct: 62  DPPDLQN---FVVDIGLDDSTIESYPKMLYSEAKLQKTDSTASCCSICLADYKGTDTLRL 121

Query: 123 LPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           LPDC HLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLASRRD
Sbjct: 122 LPDCKHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRRD 168

[Close]

BLAST of CmoCh03G011060.1 vs. TrEMBL
Match: A0A061EV28_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_023049 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.8e-60
Identity = 122/172 (70.93%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRS 62
           N T DSGGFL SNNIGGFGYGIGVS+G+L+LITTI LASY+CTR              ++
Sbjct: 2   NSTTDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTP----------PPQA 61

Query: 63  PPQAEGEA-----AAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSN 122
           PP+A  E      + VVD+GLD+ETIKSYPKLLYSEAKL   DS++SCCSICLADYK+S+
Sbjct: 62  PPRARQEPTLDPESLVVDLGLDEETIKSYPKLLYSEAKLHNKDSTSSCCSICLADYKSSD 121

Query: 123 VLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASR 170
            LR LPDC HLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPL+SR
Sbjct: 122 TLRLLPDCNHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLSSR 163

[Close]

BLAST of CmoCh03G011060.1 vs. TrEMBL
Match: W9S683_9ROSA (RING-H2 finger protein ATL70 OS=Morus notabilis GN=L484_016910 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-59
Identity = 120/172 (69.77%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGL--SSTSVVERNSN 62
           N T D+GGFL SN+IGGFGYGIGVS+G+L+LIT+I LASY+CTR+ L  SS +   RN  
Sbjct: 2   NATGDTGGFLGSNDIGGFGYGIGVSVGILLLITSITLASYFCTRSQLPPSSAAAARRNVG 61

Query: 63  RSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLK-NDSSASCCSICLADYKNSNVL 122
            +          V+DVGLD+ TIKSYPKL YSEAKL K N +S+SCCSICLADYK +++L
Sbjct: 62  PANNPEPNLPNFVIDVGLDEATIKSYPKLPYSEAKLHKANSTSSSCCSICLADYKTTDML 121

Query: 123 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFH+KC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLA+RRD
Sbjct: 122 RQLPDCGHLFHVKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLATRRD 173

[Close]

BLAST of CmoCh03G011060.1 vs. TrEMBL
Match: B9SDK9_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_0421540 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-59
Identity = 115/172 (66.86%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVE---RNS 62
           N T+  GGFL SN+IGGFGYGIGVS+G+L+LITTI LASY+CTRN       ++   RN 
Sbjct: 2   NNTSSGGGFLGSNDIGGFGYGIGVSIGILLLITTITLASYFCTRNHQQQQQSMQTRRRNR 61

Query: 63  NRSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 122
           +  PP    +   VV+VG+D+ T+K+YPKLLYS+AKL   D++A+CCSICLADYK++++L
Sbjct: 62  SEEPPDDRLQDI-VVEVGIDEATLKNYPKLLYSQAKLHNTDTTATCCSICLADYKSTDML 121

Query: 123 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCR SP+PTPLSTPLAE VPLASRRD
Sbjct: 122 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRNSPLPTPLSTPLAEVVPLASRRD 172

[Close]

BLAST of CmoCh03G011060.1 vs. TAIR10
Match: AT2G35910.1 (AT2G35910.1 RING/U-box superfamily protein)

HSP 1 Score: 197.6 bits (501), Expect = 6.3e-51
Identity = 105/163 (64.42%), Postives = 125/163 (76.69%), Query Frame = 1


Query: 7   DSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSST-SVVERNSNRSPPQ 66
           D  G L +++IGGF YGIGVS+G+L+LITTI L SYYCTRN LSS+ S   ++S R    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHH 110

Query: 67  AEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDC 126
                  VV  GLD++TI+SYPK+LYSEAK     ++ASCC+ICL DYK  ++LR LPDC
Sbjct: 111 HHHVIIDVVP-GLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLRQLPDC 170

Query: 127 GHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
            HLFHLKCID WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 171 NHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of CmoCh03G011060.1 vs. TAIR10
Match: AT5G06490.1 (AT5G06490.1 RING/U-box superfamily protein)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-43
Identity = 92/183 (50.27%), Postives = 121/183 (66.12%), Query Frame = 1


Query: 8   SGGFLSSNN-IGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L++ + +GG  YGIGVS+G+L+LITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAAAVVDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +   V  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]

BLAST of CmoCh03G011060.1 vs. TAIR10
Match: AT2G46160.1 (AT2G46160.1 RING/U-box superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-31
Identity = 77/175 (44.00%), Postives = 103/175 (58.86%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNR------------SPPQA 78
           GFGY I ++LG L+L++T+LL+SY C R+    T+ VE   +R            +    
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  EGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASC----------CSICLADYKNS 138
           E   A  V VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK +
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKEA 153

Query: 139 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
            +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P    TPLSTPL+E VPL+
Sbjct: 154 EMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of CmoCh03G011060.1 vs. TAIR10
Match: AT5G07040.1 (AT5G07040.1 RING/U-box superfamily protein)

HSP 1 Score: 121.3 bits (303), Expect = 5.7e-28
Identity = 61/149 (40.94%), Postives = 92/149 (61.74%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAAAVVDVGL 78
           G GYGI +++ +L+LI+ I+LASY C R+  +       +     P      AA V +GL
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSP----AAEVKLGL 71

Query: 79  DQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWL 138
           D+  I+SYP+++  +++ L   ++  C SICL DY+    +R +P+C H FH  C+D WL
Sbjct: 72  DRPVIESYPRIVLGDSRRLPRPNNGPC-SICLCDYEAREPVRCIPECNHCFHTDCVDEWL 131

Query: 139 RLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           R   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 132 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of CmoCh03G011060.1 vs. TAIR10
Match: AT3G61550.1 (AT3G61550.1 RING/U-box superfamily protein)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-25
Identity = 67/177 (37.85%), Postives = 96/177 (54.24%), Query Frame = 1


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEG---------- 78
           G GY I ++LG L+LI+TI+L+SY C R      S    N+N +   ++           
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  ------EAAAVVDVGLDQETIKSYPKLLYSE--AKLLKNDS------SASCCSICLADYK 138
                 E+  VV  GLD   I SYPK  +++    ++  D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
              +LR +P+C H FH+ C+D WL+L+ +CPVCR SP+P    TP STPL+E VPL+
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

[Close]

BLAST of CmoCh03G011060.1 vs. NCBI nr
Match: gi|659125321|ref|XP_008462625.1| (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 149/172 (86.63%), Postives = 162/172 (94.19%), Query Frame = 1


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-AAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E  + VV++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of CmoCh03G011060.1 vs. NCBI nr
Match: gi|449451185|ref|XP_004143342.1| (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 7.4e-78
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 1


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSS+ V     N
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVVQRTPPN 60

Query: 61  RSPPQAEGEA-AAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA GE  + VVD+GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of CmoCh03G011060.1 vs. NCBI nr
Match: gi|595807800|ref|XP_007202672.1| (hypothetical protein PRUPE_ppa012474mg [Prunus persica])

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62
Identity = 124/170 (72.94%), Postives = 138/170 (81.18%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN-R 62
           N T+DSGGFL SNNIGGFGYGIGVS+G+L+LITTI LASY+CTR          RN+N  
Sbjct: 2   NNTSDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTQQPPAPATHRNNNIL 61

Query: 63  SPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRA 122
            PP  +     VVD+GLD  TI+SYPK+LYSEAKL K DS+ASCCSICLADYK ++ LR 
Sbjct: 62  DPPDLQN---FVVDIGLDDSTIESYPKMLYSEAKLQKTDSTASCCSICLADYKGTDTLRL 121

Query: 123 LPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           LPDC HLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLASRRD
Sbjct: 122 LPDCKHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRRD 168

[Close]

BLAST of CmoCh03G011060.1 vs. NCBI nr
Match: gi|645271779|ref|XP_008241078.1| (PREDICTED: RING-H2 finger protein ATL70 [Prunus mume])

HSP 1 Score: 245.7 bits (626), Expect = 5.7e-62
Identity = 123/170 (72.35%), Postives = 137/170 (80.59%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNR- 62
           N T+DSGGFL SNNIGGFGYGIGVS+G+L+LITTI LASY+CTR          RN+N  
Sbjct: 2   NNTSDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTQQPPAPATHRNNNTL 61

Query: 63  SPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRA 122
            PP  +     VVD+GLD  TI+SYPK+LYSEAKL K  S+ASCCSICLADYK ++ LR 
Sbjct: 62  DPPDLQN---FVVDIGLDDSTIESYPKMLYSEAKLQKTGSTASCCSICLADYKGTDTLRL 121

Query: 123 LPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           LPDC HLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLASRRD
Sbjct: 122 LPDCKHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRRD 168

[Close]

BLAST of CmoCh03G011060.1 vs. NCBI nr
Match: gi|694319846|ref|XP_009348829.1| (PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri])

HSP 1 Score: 241.1 bits (614), Expect = 1.4e-60
Identity = 124/171 (72.51%), Postives = 137/171 (80.12%), Query Frame = 1


Query: 3   NGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRS 62
           N T+DSGGFL SNNIG FGYGIGVS+G+L+LITTI LASY+C R          RN+  +
Sbjct: 2   NATSDSGGFLGSNNIGSFGYGIGVSVGVLLLITTITLASYFCARTQQPPAPPTRRNAGDA 61

Query: 63  --PPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 122
             PP  E     VVD+GLD  TI+SYPKLLYSEAKL   DS+ASCCSICLADYKNS++LR
Sbjct: 62  MDPPGVEN---FVVDIGLDDNTIQSYPKLLYSEAKLQMKDSTASCCSICLADYKNSDMLR 121

Query: 123 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
            LPDC HLFHLKCIDPWLRL+PTCPVCRTSPIPTPLSTPLAE VPLASRRD
Sbjct: 122 LLPDCRHLFHLKCIDPWLRLNPTCPVCRTSPIPTPLSTPLAEVVPLASRRD 169

The following BLAST results are available for this feature:

BLAST of CmoCh03G011060.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL70_ARATH	1.1e-49	64.42	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1	[more]
ATL71_ARATH	2.2e-42	50.27	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1	[more]
ATL67_ARATH	4.4e-30	44.00	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1	[more]
ATL69_ARATH	1.0e-26	40.94	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1	[more]
ATL68_ARATH	2.1e-24	37.85	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1	[more]

BLAST of CmoCh03G011060.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIW7_CUCSA	5.2e-78	87.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476670 PE=4 SV=1	[more]
M5VS68_PRUPE	8.0e-63	72.94	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012474mg PE=4 SV=1	[more]
A0A061EV28_THECC	2.8e-60	70.93	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_023049 PE=4 SV=1	[more]
W9S683_9ROSA	3.1e-59	69.77	RING-H2 finger protein ATL70 OS=Morus notabilis GN=L484_016910 PE=4 SV=1	[more]
B9SDK9_RICCO	4.1e-59	66.86	Ring finger protein, putative OS=Ricinus communis GN=RCOM_0421540 PE=4 SV=1	[more]

BLAST of CmoCh03G011060.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35910.1	6.3e-51	64.42	RING/U-box superfamily protein	[more]
AT5G06490.1	1.3e-43	50.27	RING/U-box superfamily protein	[more]
AT2G46160.1	2.5e-31	44.00	RING/U-box superfamily protein	[more]
AT5G07040.1	5.7e-28	40.94	RING/U-box superfamily protein	[more]
AT3G61550.1	1.2e-25	37.85	RING/U-box superfamily protein	[more]

BLAST of CmoCh03G011060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125321\|ref\|XP_008462625.1\|	1.5e-78	86.63	PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo]	[more]
gi\|449451185\|ref\|XP_004143342.1\|	7.4e-78	87.21	PREDICTED: RING-H2 finger protein ATL70-like [Cucumis sativus]	[more]
gi\|595807800\|ref\|XP_007202672.1\|	1.1e-62	72.94	hypothetical protein PRUPE_ppa012474mg [Prunus persica]	[more]
gi\|645271779\|ref\|XP_008241078.1\|	5.7e-62	72.35	PREDICTED: RING-H2 finger protein ATL70 [Prunus mume]	[more]
gi\|694319846\|ref\|XP_009348829.1\|	1.4e-60	72.51	PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh03G011060	CmoCh03G011060	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh03G011060.1	CmoCh03G011060.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G011060.1.CDS.1	CmoCh03G011060.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G011060.1.exon.1	CmoCh03G011060.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 105..148 score: 7.2
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 106..147 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 106..148 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 102..149 score: 1.9
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 10..171 score: 1.1
None	No IPR available	PANTHER	PTHR14155:SF90	SUBFAMILY NOT NAMED	coord: 10..171 score: 1.1
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 82..153 score: 1.11