CmoCh07G008490 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G008490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ring finger protein, putative
Location	Cmo_Chr07 : 4015530 .. 4016142 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGATACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGTCCAATCGCCGACCTCCGGGATTCAGAACAACGTCAATCTCTCGCCGCCGCCGCCGCCGCGGCTGGCGGAGGAGGATGCCGTAGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCCGATTGCGGCCATTTGTTCCACCTCAAGTGTGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGGTTTGCCGGACCTCGCCCATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCTAGATAGCACAGTTGAAGAAGACGATCGGACGGCATTTTCTCCATTCATTTGTTTGTTACAGAATCGATCCATCTCCTCGATCGCGAATCGCCATAGTTAG

mRNA sequence

ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGATACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGTCCAATCGCCGACCTCCGGGATTCAGAACAACGTCAATCTCTCGCCGCCGCCGCCGCCGCGGCTGGCGGAGGAGGATGCCGTAGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCCGATTGCGGCCATTTGTTCCACCTCAAGTGTGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGGTTTGCCGGACCTCGCCCATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAAATCGATCCATCTCCTCGATCGCGAATCGCCATAGTTAG

Coding sequence (CDS)

ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGATACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGTCCAATCGCCGACCTCCGGGATTCAGAACAACGTCAATCTCTCGCCGCCGCCGCCGCCGCGGCTGGCGGAGGAGGATGCCGTAGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCCGATTGCGGCCATTTGTTCCACCTCAAGTGTGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGGTTTGCCGGACCTCGCCCATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAAATCGATCCATCTCCTCGATCGCGAATCGCCATAGTTAG

Homology

[Close]

BLAST of CmoCh07G008490 vs. Swiss-Prot
Match: ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.6e-45
Identity = 96/171 (56.14%), Postives = 124/171 (72.51%), Query Frame = 1


Query: 7   DGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPP 66
           D  G L + +IGG+ YGIGVS+G+L+LITTI L SYYCTR  Q  +S  Q N + +    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRN-QLSSSPSQTNQDST---- 110

Query: 67  PRLAEEDAVVVVDI--GIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLR 126
            R+      V++D+  G+D++TI+++PK+LYSEAK     ++ASCC+ICL DYK   +LR
Sbjct: 111 -RIHHHHHHVIIDVVPGLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLR 170

Query: 127 ILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQNRSISSIA 176
            LPDC HLFHLKC+D WLRL+PTCPVCRTSP+PTPLSTPLAE     SS+A
Sbjct: 171 QLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVA 212

[Close]

BLAST of CmoCh07G008490 vs. Swiss-Prot
Match: ATL71_ARATH (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.2e-42
Identity = 92/175 (52.57%), Postives = 115/175 (65.71%), Query Frame = 1


Query: 8   GGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTR--VVQSPTSGI-----QNNVN 67
           G    ++  +GG  YGIGVS+G+L+LITTI L SYYCTR  +  SPT+       Q   N
Sbjct: 11  GHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESN 70

Query: 68  LSPPPPPRLA-----EEDAVVVVDIGIDQETIRNFPKLLYSEAKI----QNNDSSASCCS 127
            + PP          E D VVV  +G+ +E I+ FPKL Y EA++    Q   S+ SCCS
Sbjct: 71  GTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCS 130

Query: 128 ICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 167
           ICLADYK  D++R+LPDC HLFH  CVDPWLRLHPTCPVCRTSP+P+P  TP+A+
Sbjct: 131 ICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVAD 185

[Close]

BLAST of CmoCh07G008490 vs. Swiss-Prot
Match: ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.2e-27
Identity = 65/160 (40.62%), Postives = 103/160 (64.38%), Query Frame = 1


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPP-PRL---AEEDA 78
           G+GY I ++LG L+L++T+LL+SY C R  +  T+ +++  +       PR+   AEED 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  VVV----VDIGIDQETIRNFPKLLYS-EAKIQNNDSSA----SCCSICLADYKNSDVLRI 138
             +    V +G+DQ  I ++PK  +S +    ++D       + CSICL +YK +++LR+
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRM 153

Query: 139 LPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLA 166
           +P+C H FHL C+D WL+L+ +CPVCR SP+PTP STPL+
Sbjct: 154 MPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLS 193

[Close]

BLAST of CmoCh07G008490 vs. Swiss-Prot
Match: ATL68_ARATH (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.8e-24
Identity = 63/165 (38.18%), Postives = 94/165 (56.97%), Query Frame = 1


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPR---------L 78
           G GY I ++LG L+LI+TI+L+SY C R  +   S    N N +     R         +
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  AEEDAVV---VVDIGIDQETIRNFPKLLYSE--AKIQNNDS------SASCCSICLADYK 138
           AE+D +    VV  G+D   I ++PK  +++    + N D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTP 164
             ++LR++P+C H FH+ C+D WL+L+ +CPVCR SP+PTP STP
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTP 189

[Close]

BLAST of CmoCh07G008490 vs. Swiss-Prot
Match: ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.4e-24
Identity = 55/148 (37.16%), Postives = 88/148 (59.46%), Query Frame = 1


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPRLAEEDAVVVV 78
           G GYGI +++ +L+LI+ I+LASY C R   +      ++V L  P P           V
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSP--------AAEV 71

Query: 79  DIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCV 138
            +G+D+  I ++P+++  +++     ++  C SICL DY+  + +R +P+C H FH  CV
Sbjct: 72  KLGLDRPVIESYPRIVLGDSRRLPRPNNGPC-SICLCDYEAREPVRCIPECNHCFHTDCV 131

Query: 139 DPWLRLHPTCPVCRTSPIPTPLSTPLAE 167
           D WLR   TCP+CR SP P+ L+TPL++
Sbjct: 132 DEWLRTSATCPLCRNSPAPSRLATPLSD 150

[Close]

BLAST of CmoCh07G008490 vs. TrEMBL
Match: A0A0A0KIW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476670 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-66
Identity = 132/170 (77.65%), Postives = 145/170 (85.29%), Query Frame = 1


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGT + GGFLSS NIGG+GYGIGVSLGLLILITTILLASYYCTR      +G+ ++V 
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTR------NGLSSSVV 60

Query: 61  LSPPP---PPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADY 120
              PP   PP+   E   VVVDIG+DQETI ++PKLLYSEAK+Q NDS+ASCCSICLADY
Sbjct: 61  QRTPPNRSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADY 120

Query: 121 KNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQ 168
           KNSDVLR+LPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQ
Sbjct: 121 KNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQ 164

[Close]

BLAST of CmoCh07G008490 vs. TrEMBL
Match: M5VS68_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012474mg PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.2e-58
Identity = 113/164 (68.90%), Postives = 128/164 (78.05%), Query Frame = 1


Query: 3   NGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLS 62
           N T D GGFL S NIGG+GYGIGVS+G+L+LITTI LASY+CTR  Q P      N N+ 
Sbjct: 2   NNTSDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTQQPPAPATHRNNNIL 61

Query: 63  PPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDV 122
            PP  +        VVDIG+D  TI ++PK+LYSEAK+Q  DS+ASCCSICLADYK +D 
Sbjct: 62  DPPDLQN------FVVDIGLDDSTIESYPKMLYSEAKLQKTDSTASCCSICLADYKGTDT 121

Query: 123 LRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 167
           LR+LPDC HLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE
Sbjct: 122 LRLLPDCKHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 159

[Close]

BLAST of CmoCh07G008490 vs. TrEMBL
Match: A0A061EV28_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_023049 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.2e-58
Identity = 115/170 (67.65%), Postives = 135/170 (79.41%), Query Frame = 1


Query: 3   NGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLS 62
           N T D GGFL S NIGG+GYGIGVS+G+L+LITTI LASY+CTR               +
Sbjct: 2   NSTTDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTR---------------T 61

Query: 63  PPP--PPRLAEEDAV----VVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLAD 122
           PPP  PPR  +E  +    +VVD+G+D+ETI+++PKLLYSEAK+ N DS++SCCSICLAD
Sbjct: 62  PPPQAPPRARQEPTLDPESLVVDLGLDEETIKSYPKLLYSEAKLHNKDSTSSCCSICLAD 121

Query: 123 YKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 167
           YK+SD LR+LPDC HLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE
Sbjct: 122 YKSSDTLRLLPDCNHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 156

[Close]

BLAST of CmoCh07G008490 vs. TrEMBL
Match: B9SDK9_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_0421540 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.6e-56
Identity = 107/164 (65.24%), Postives = 132/164 (80.49%), Query Frame = 1


Query: 3   NGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLS 62
           N T  GGGFL S +IGG+GYGIGVS+G+L+LITTI LASY+CTR  Q     +Q      
Sbjct: 2   NNTSSGGGFLGSNDIGGFGYGIGVSIGILLLITTITLASYFCTRNHQQQQQSMQTRRRNR 61

Query: 63  PPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDV 122
              PP    +D  +VV++GID+ T++N+PKLLYS+AK+ N D++A+CCSICLADYK++D+
Sbjct: 62  SEEPPDDRLQD--IVVEVGIDEATLKNYPKLLYSQAKLHNTDTTATCCSICLADYKSTDM 121

Query: 123 LRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 167
           LR+LPDCGHLFHLKCVDPWLRLHPTCPVCR SP+PTPLSTPLAE
Sbjct: 122 LRLLPDCGHLFHLKCVDPWLRLHPTCPVCRNSPLPTPLSTPLAE 163

[Close]

BLAST of CmoCh07G008490 vs. TrEMBL
Match: A0A068UPW0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031344001 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.4e-56
Identity = 108/166 (65.06%), Postives = 131/166 (78.92%), Query Frame = 1


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MN      GGF+ SGNIGG GYGIGVS+G+L+LITTI LASYYCTR   +  + +Q N  
Sbjct: 1   MNATETSPGGFMGSGNIGGLGYGIGVSVGILVLITTITLASYYCTRRSATVVAPLQRNPQ 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
             P  P  L       VV++G+D+ T+ ++P++LYSEAK++NNDS+ SCCSICLADYKN+
Sbjct: 61  QDPADPRHL-------VVEVGLDEATLLSYPEMLYSEAKVKNNDSTGSCCSICLADYKNT 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 167
           D+LR+LPDCGHLFHLKCVDPWLR HPTCPVCRTSP+PTPLSTPLAE
Sbjct: 121 DMLRLLPDCGHLFHLKCVDPWLRQHPTCPVCRTSPLPTPLSTPLAE 159

[Close]

BLAST of CmoCh07G008490 vs. TAIR10
Match: AT2G35910.1 (AT2G35910.1 RING/U-box superfamily protein)

HSP 1 Score: 181.8 bits (460), Expect = 3.7e-46
Identity = 96/171 (56.14%), Postives = 124/171 (72.51%), Query Frame = 1


Query: 7   DGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPP 66
           D  G L + +IGG+ YGIGVS+G+L+LITTI L SYYCTR  Q  +S  Q N + +    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRN-QLSSSPSQTNQDST---- 110

Query: 67  PRLAEEDAVVVVDI--GIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLR 126
            R+      V++D+  G+D++TI+++PK+LYSEAK     ++ASCC+ICL DYK   +LR
Sbjct: 111 -RIHHHHHHVIIDVVPGLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLR 170

Query: 127 ILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQNRSISSIA 176
            LPDC HLFHLKC+D WLRL+PTCPVCRTSP+PTPLSTPLAE     SS+A
Sbjct: 171 QLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVA 212

[Close]

BLAST of CmoCh07G008490 vs. TAIR10
Match: AT5G06490.1 (AT5G06490.1 RING/U-box superfamily protein)

HSP 1 Score: 172.2 bits (435), Expect = 3.0e-43
Identity = 92/175 (52.57%), Postives = 115/175 (65.71%), Query Frame = 1


Query: 8   GGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTR--VVQSPTSGI-----QNNVN 67
           G    ++  +GG  YGIGVS+G+L+LITTI L SYYCTR  +  SPT+       Q   N
Sbjct: 11  GHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESN 70

Query: 68  LSPPPPPRLA-----EEDAVVVVDIGIDQETIRNFPKLLYSEAKI----QNNDSSASCCS 127
            + PP          E D VVV  +G+ +E I+ FPKL Y EA++    Q   S+ SCCS
Sbjct: 71  GTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCS 130

Query: 128 ICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 167
           ICLADYK  D++R+LPDC HLFH  CVDPWLRLHPTCPVCRTSP+P+P  TP+A+
Sbjct: 131 ICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVAD 185

[Close]

BLAST of CmoCh07G008490 vs. TAIR10
Match: AT2G46160.1 (AT2G46160.1 RING/U-box superfamily protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.5e-28
Identity = 65/160 (40.62%), Postives = 103/160 (64.38%), Query Frame = 1


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPP-PRL---AEEDA 78
           G+GY I ++LG L+L++T+LL+SY C R  +  T+ +++  +       PR+   AEED 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  VVV----VDIGIDQETIRNFPKLLYS-EAKIQNNDSSA----SCCSICLADYKNSDVLRI 138
             +    V +G+DQ  I ++PK  +S +    ++D       + CSICL +YK +++LR+
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRM 153

Query: 139 LPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLA 166
           +P+C H FHL C+D WL+L+ +CPVCR SP+PTP STPL+
Sbjct: 154 MPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLS 193

[Close]

BLAST of CmoCh07G008490 vs. TAIR10
Match: AT3G61550.1 (AT3G61550.1 RING/U-box superfamily protein)

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-25
Identity = 63/165 (38.18%), Postives = 94/165 (56.97%), Query Frame = 1


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPR---------L 78
           G GY I ++LG L+LI+TI+L+SY C R  +   S    N N +     R         +
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  AEEDAVV---VVDIGIDQETIRNFPKLLYSE--AKIQNNDS------SASCCSICLADYK 138
           AE+D +    VV  G+D   I ++PK  +++    + N D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTP 164
             ++LR++P+C H FH+ C+D WL+L+ +CPVCR SP+PTP STP
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTP 189

[Close]

BLAST of CmoCh07G008490 vs. TAIR10
Match: AT5G07040.1 (AT5G07040.1 RING/U-box superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 3.6e-25
Identity = 55/148 (37.16%), Postives = 88/148 (59.46%), Query Frame = 1


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPRLAEEDAVVVV 78
           G GYGI +++ +L+LI+ I+LASY C R   +      ++V L  P P           V
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSP--------AAEV 71

Query: 79  DIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCV 138
            +G+D+  I ++P+++  +++     ++  C SICL DY+  + +R +P+C H FH  CV
Sbjct: 72  KLGLDRPVIESYPRIVLGDSRRLPRPNNGPC-SICLCDYEAREPVRCIPECNHCFHTDCV 131

Query: 139 DPWLRLHPTCPVCRTSPIPTPLSTPLAE 167
           D WLR   TCP+CR SP P+ L+TPL++
Sbjct: 132 DEWLRTSATCPLCRNSPAPSRLATPLSD 150

[Close]

BLAST of CmoCh07G008490 vs. NCBI nr
Match: gi|659125321|ref|XP_008462625.1| (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 2.1e-67
Identity = 135/167 (80.84%), Postives = 148/167 (88.62%), Query Frame = 1


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGT + GGFLSS NIGG+GYGIGVSLGLLILITTILLASYYCTR   S TS IQ+  +
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            SPP    +AE D+V VV+IG+DQETI ++PKLLYSEAK+Q NDS+ASCCSICLADYKNS
Sbjct: 61  RSPPQA--VAELDSV-VVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQ 168
           DVLR+LPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQ
Sbjct: 121 DVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQ 164

[Close]

BLAST of CmoCh07G008490 vs. NCBI nr
Match: gi|449451185|ref|XP_004143342.1| (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 2.3e-66
Identity = 132/170 (77.65%), Postives = 145/170 (85.29%), Query Frame = 1


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGT + GGFLSS NIGG+GYGIGVSLGLLILITTILLASYYCTR      +G+ ++V 
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTR------NGLSSSVV 60

Query: 61  LSPPP---PPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADY 120
              PP   PP+   E   VVVDIG+DQETI ++PKLLYSEAK+Q NDS+ASCCSICLADY
Sbjct: 61  QRTPPNRSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADY 120

Query: 121 KNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQ 168
           KNSDVLR+LPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQ
Sbjct: 121 KNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQ 164

[Close]

BLAST of CmoCh07G008490 vs. NCBI nr
Match: gi|590633069|ref|XP_007028016.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 231.9 bits (590), Expect = 8.9e-58
Identity = 115/170 (67.65%), Postives = 135/170 (79.41%), Query Frame = 1


Query: 3   NGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLS 62
           N T D GGFL S NIGG+GYGIGVS+G+L+LITTI LASY+CTR               +
Sbjct: 2   NSTTDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTR---------------T 61

Query: 63  PPP--PPRLAEEDAV----VVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLAD 122
           PPP  PPR  +E  +    +VVD+G+D+ETI+++PKLLYSEAK+ N DS++SCCSICLAD
Sbjct: 62  PPPQAPPRARQEPTLDPESLVVDLGLDEETIKSYPKLLYSEAKLHNKDSTSSCCSICLAD 121

Query: 123 YKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 167
           YK+SD LR+LPDC HLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE
Sbjct: 122 YKSSDTLRLLPDCNHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 156

[Close]

BLAST of CmoCh07G008490 vs. NCBI nr
Match: gi|595807800|ref|XP_007202672.1| (hypothetical protein PRUPE_ppa012474mg [Prunus persica])

HSP 1 Score: 231.9 bits (590), Expect = 8.9e-58
Identity = 113/164 (68.90%), Postives = 128/164 (78.05%), Query Frame = 1


Query: 3   NGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLS 62
           N T D GGFL S NIGG+GYGIGVS+G+L+LITTI LASY+CTR  Q P      N N+ 
Sbjct: 2   NNTSDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTQQPPAPATHRNNNIL 61

Query: 63  PPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDV 122
            PP  +        VVDIG+D  TI ++PK+LYSEAK+Q  DS+ASCCSICLADYK +D 
Sbjct: 62  DPPDLQN------FVVDIGLDDSTIESYPKMLYSEAKLQKTDSTASCCSICLADYKGTDT 121

Query: 123 LRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 167
           LR+LPDC HLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE
Sbjct: 122 LRLLPDCKHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 159

[Close]

BLAST of CmoCh07G008490 vs. NCBI nr
Match: gi|645271779|ref|XP_008241078.1| (PREDICTED: RING-H2 finger protein ATL70 [Prunus mume])

HSP 1 Score: 228.0 bits (580), Expect = 1.3e-56
Identity = 112/164 (68.29%), Postives = 126/164 (76.83%), Query Frame = 1


Query: 3   NGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLS 62
           N T D GGFL S NIGG+GYGIGVS+G+L+LITTI LASY+CTR  Q P      N N  
Sbjct: 2   NNTSDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTQQPPAPATHRNNNTL 61

Query: 63  PPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDV 122
            PP  +        VVDIG+D  TI ++PK+LYSEAK+Q   S+ASCCSICLADYK +D 
Sbjct: 62  DPPDLQN------FVVDIGLDDSTIESYPKMLYSEAKLQKTGSTASCCSICLADYKGTDT 121

Query: 123 LRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 167
           LR+LPDC HLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE
Sbjct: 122 LRLLPDCKHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAE 159

The following BLAST results are available for this feature:

BLAST of CmoCh07G008490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL70_ARATH	6.6e-45	56.14	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1	[more]
ATL71_ARATH	5.2e-42	52.57	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1	[more]
ATL67_ARATH	6.2e-27	40.63	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1	[more]
ATL68_ARATH	3.8e-24	38.18	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1	[more]
ATL69_ARATH	6.4e-24	37.16	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1	[more]

BLAST of CmoCh07G008490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIW7_CUCSA	1.6e-66	77.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476670 PE=4 SV=1	[more]
M5VS68_PRUPE	6.2e-58	68.90	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012474mg PE=4 SV=1	[more]
A0A061EV28_THECC	6.2e-58	67.65	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_023049 PE=4 SV=1	[more]
B9SDK9_RICCO	2.6e-56	65.24	Ring finger protein, putative OS=Ricinus communis GN=RCOM_0421540 PE=4 SV=1	[more]
A0A068UPW0_COFCA	4.4e-56	65.06	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031344001 PE=4 SV=1	[more]

BLAST of CmoCh07G008490 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35910.1	3.7e-46	56.14	RING/U-box superfamily protein	[more]
AT5G06490.1	3.0e-43	52.57	RING/U-box superfamily protein	[more]
AT2G46160.1	3.5e-28	40.63	RING/U-box superfamily protein	[more]
AT3G61550.1	2.1e-25	38.18	RING/U-box superfamily protein	[more]
AT5G07040.1	3.6e-25	37.16	RING/U-box superfamily protein	[more]

BLAST of CmoCh07G008490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125321\|ref\|XP_008462625.1\|	2.1e-67	80.84	PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo]	[more]
gi\|449451185\|ref\|XP_004143342.1\|	2.3e-66	77.65	PREDICTED: RING-H2 finger protein ATL70-like [Cucumis sativus]	[more]
gi\|590633069\|ref\|XP_007028016.1\|	8.9e-58	67.65	RING/U-box superfamily protein [Theobroma cacao]	[more]
gi\|595807800\|ref\|XP_007202672.1\|	8.9e-58	68.90	hypothetical protein PRUPE_ppa012474mg [Prunus persica]	[more]
gi\|645271779\|ref\|XP_008241078.1\|	1.3e-56	68.29	PREDICTED: RING-H2 finger protein ATL70 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0001666	response to hypoxia
biological_process	GO:0042550	photosystem I stabilization
biological_process	GO:0009877	nodulation
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0019375	galactolipid biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0016117	carotenoid biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009707	chloroplast outer membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0043661	peribacteroid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046481	digalactosyldiacylglycerol synthase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G008490.1	CmoCh07G008490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 109..152 score: 4.6
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 110..151 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 110..152 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 106..153 score: 2.8
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 10..177 score: 1.8
None	No IPR available	PANTHER	PTHR14155:SF90	SUBFAMILY NOT NAMED	coord: 10..177 score: 1.8
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 86..157 score: 3.26

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G008490	Cucsa.083830	Cucumber (Gy14) v1	cgycmoB0150
CmoCh07G008490	Cucsa.242010	Cucumber (Gy14) v1	cgycmoB0683
CmoCh07G008490	CmaCh14G003690	Cucurbita maxima (Rimu)	cmacmoB275
CmoCh07G008490	CmaCh03G011170	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G008490	CmaCh07G008210	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G008490	Cla008404	Watermelon (97103) v1	cmowmB814
CmoCh07G008490	Cla017609	Watermelon (97103) v1	cmowmB804
CmoCh07G008490	Csa3G782740	Cucumber (Chinese Long) v2	cmocuB844
CmoCh07G008490	Csa6G476670	Cucumber (Chinese Long) v2	cmocuB863
CmoCh07G008490	MELO3C009554	Melon (DHL92) v3.5.1	cmomeB777
CmoCh07G008490	MELO3C024590	Melon (DHL92) v3.5.1	cmomeB783
CmoCh07G008490	ClCG10G018180	Watermelon (Charleston Gray)	cmowcgB753
CmoCh07G008490	ClCG01G015050	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G008490	CSPI03G35770	Wild cucumber (PI 183967)	cmocpiB854
CmoCh07G008490	CSPI06G26130	Wild cucumber (PI 183967)	cmocpiB871
CmoCh07G008490	Lsi03G018060	Bottle gourd (USVL1VR-Ls)	cmolsiB787
CmoCh07G008490	Lsi01G011800	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G008490	Cp4.1LG10g03770	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G008490	Cp4.1LG19g04800	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G008490	Cp4.1LG03g00390	Cucurbita pepo (Zucchini)	cmocpeB821
CmoCh07G008490	MELO3C009554.2	Melon (DHL92) v3.6.1	cmomedB881
CmoCh07G008490	MELO3C024590.2	Melon (DHL92) v3.6.1	cmomedB889
CmoCh07G008490	CsaV3_6G041160	Cucumber (Chinese Long) v3	cmocucB1020
CmoCh07G008490	CsaV3_3G038130	Cucumber (Chinese Long) v3	cmocucB0997
CmoCh07G008490	Cla97C01G014050	Watermelon (97103) v2	cmowmbB849
CmoCh07G008490	Cla97C10G201150	Watermelon (97103) v2	cmowmbB851
CmoCh07G008490	Bhi03G001373	Wax gourd	cmowgoB1055
CmoCh07G008490	CsGy6G025510	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G008490	CsGy3G033240	Cucumber (Gy14) v2	cgybcmoB419
CmoCh07G008490	Carg05332	Silver-seed gourd	carcmoB1100
CmoCh07G008490	Carg03615	Silver-seed gourd	carcmoB0352
CmoCh07G008490	Carg10515	Silver-seed gourd	carcmoB0338

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G008490	CmoCh14G003690	Cucurbita moschata (Rifu)	cmocmoB228
CmoCh07G008490	CmoCh03G011060	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G008490	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G008490	Wild cucumber (PI 183967)	cmocpiB874
CmoCh07G008490	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G008490	Wax gourd	cmowgoB1066