Carg10515 (gene) Silver-seed gourd

Overview
NameCarg10515
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-H2 finger protein
LocationCucurbita_argyrosperma_scaffold_098 : 574500 .. 575015 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGGAGTCGTCATCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTCCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

mRNA sequence

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGGAGTCGTCATCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTCCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Coding sequence (CDS)

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGGAGTCGTCATCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTCCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Protein sequence

MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Homology
[Close]
BLAST of Carg10515 vs. NCBI nr
Match: XP_022977896.1 (RING-H2 finger protein ATL70-like [Cucurbita maxima])

HSP 1 Score: 318.2 bits (814), Expect = 1.8e-83
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0 

Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERN+N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNTN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA VV+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]
BLAST of Carg10515 vs. NCBI nr
Match: XP_023544988.1 (RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.4 bits (812), Expect = 3.0e-83
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXX TTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXXTTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA VV+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]
BLAST of Carg10515 vs. NCBI nr
Match: XP_022925965.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata])

HSP 1 Score: 315.8 bits (808), Expect = 8.7e-83
Identity = 167/171 (97.66%), Postives = 168/171 (98.25%), Query Frame = 0 

Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXX TTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXXTTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA  V+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]
BLAST of Carg10515 vs. NCBI nr
Match: XP_008462625.1 (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 4.5e-71
Identity = 147/172 (85.47%), Postives = 160/172 (93.02%), Query Frame = 0 

Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFG XXXXXXXXXXX TTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGXXXXXXXXXXXXXTTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E   VV+++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]
BLAST of Carg10515 vs. NCBI nr
Match: XP_004143342.1 (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis sativus] >KGN48327.1 hypothetical protein Csa_6G476670 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 2.2e-70
Identity = 148/172 (86.05%), Postives = 157/172 (91.28%), Query Frame = 0 

Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFG XXXXXXXXXXX TTILLASYYCTRNGLSS+ V     N
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGXXXXXXXXXXXXXTTILLASYYCTRNGLSSSVVQRTPPN 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA GE   VV+D+GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]
BLAST of Carg10515 vs. TAIR10
Match: AT5G06490.1 (RING/U-box superfamily protein)

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-38
Identity = 85/183 (46.45%), Postives = 111/183 (60.66%), Query Frame = 0 

Query: 8   SGGFL-SSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L +++ +GG  Y           ITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAGVVIDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +  VV  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]
BLAST of Carg10515 vs. TAIR10
Match: AT2G35910.1 (RING/U-box superfamily protein)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-36
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 77  GLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDP 136
           GLD++TI+SYPK+LYSEA   K  ++ASCC+ICL DYK  ++LR LPDC HLFHLKCID 
Sbjct: 121 GLDEDTIQSYPKILYSEA---KGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDT 180

Query: 137 WLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
           WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 181 WLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]
BLAST of Carg10515 vs. TAIR10
Match: AT2G46160.1 (RING/U-box superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-23
Identity = 62/158 (39.24%), Postives = 84/158 (53.16%), Query Frame = 0 

Query: 19  GFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSNR-------------SPPQ 78
           GFGY           ++T+LL+SY C R+    T+ VE   +R                 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  AEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSAS----------CCSICLADYKN 138
            + EAG V+ VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK 
Sbjct: 94  EDLEAGDVV-VGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKE 153

Query: 139 SNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP 154
           + +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P
Sbjct: 154 AEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLP 185

[Close]
BLAST of Carg10515 vs. TAIR10
Match: AT5G07040.1 (RING/U-box superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-21
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 0 

Query: 74  IDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKC 133
           + +GLD+  I+SYP+++  +++ L   ++   CSICL DY+    +R +P+C H FH  C
Sbjct: 63  VKLGLDRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDC 122

Query: 134 IDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           +D WLR   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 123 VDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]
BLAST of Carg10515 vs. TAIR10
Match: AT2G25410.1 (RING/U-box superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-19
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 0 

Query: 36  TILLASYYCTRNGLSS---TSVVERNSNRSPPQAEGEAGVVIDVGLDQETIKSYPKLLYS 95
           T  +    C+   +SS    +VV R S     Q   E   V  +GLD+ TI+SY K+   
Sbjct: 257 TFCVGLVMCSSERVSSQIQQAVVARLSGSVTSQPSNE---VARIGLDESTIESYKKVELG 316

Query: 96  EAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPI 154
           E++ L   S+   C ICL++Y     +R LP+C H FH +CID WL+LH +CPVCR++P 
Sbjct: 317 ESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRSNPS 374

[Close]
BLAST of Carg10515 vs. Swiss-Prot
Match: sp|Q9FG21|ATL71_ARATH (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.9e-37
Identity = 85/183 (46.45%), Postives = 111/183 (60.66%), Query Frame = 0 

Query: 8   SGGFL-SSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L +++ +GG  Y           ITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAGVVIDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +  VV  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]
BLAST of Carg10515 vs. Swiss-Prot
Match: sp|Q8RX29|ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-35
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 77  GLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDP 136
           GLD++TI+SYPK+LYSEA   K  ++ASCC+ICL DYK  ++LR LPDC HLFHLKCID 
Sbjct: 121 GLDEDTIQSYPKILYSEA---KGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDT 180

Query: 137 WLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
           WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 181 WLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]
BLAST of Carg10515 vs. Swiss-Prot
Match: sp|O82353|ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-22
Identity = 62/158 (39.24%), Postives = 84/158 (53.16%), Query Frame = 0 

Query: 19  GFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSNR-------------SPPQ 78
           GFGY           ++T+LL+SY C R+    T+ VE   +R                 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  AEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSAS----------CCSICLADYKN 138
            + EAG V+ VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK 
Sbjct: 94  EDLEAGDVV-VGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKE 153

Query: 139 SNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP 154
           + +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P
Sbjct: 154 AEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLP 185

[Close]
BLAST of Carg10515 vs. Swiss-Prot
Match: sp|Q9FL42|ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-20
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 0 

Query: 74  IDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKC 133
           + +GLD+  I+SYP+++  +++ L   ++   CSICL DY+    +R +P+C H FH  C
Sbjct: 63  VKLGLDRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDC 122

Query: 134 IDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           +D WLR   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 123 VDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]
BLAST of Carg10515 vs. Swiss-Prot
Match: sp|Q9SKK8|ATL22_ARATH (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.1e-18
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 0 

Query: 36  TILLASYYCTRNGLSS---TSVVERNSNRSPPQAEGEAGVVIDVGLDQETIKSYPKLLYS 95
           T  +    C+   +SS    +VV R S     Q   E   V  +GLD+ TI+SY K+   
Sbjct: 257 TFCVGLVMCSSERVSSQIQQAVVARLSGSVTSQPSNE---VARIGLDESTIESYKKVELG 316

Query: 96  EAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPI 154
           E++ L   S+   C ICL++Y     +R LP+C H FH +CID WL+LH +CPVCR++P 
Sbjct: 317 ESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRSNPS 374

[Close]
BLAST of Carg10515 vs. TrEMBL
Match: tr|A0A1S3CHE9|A0A1S3CHE9_CUCME (RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 3.0e-71
Identity = 147/172 (85.47%), Postives = 160/172 (93.02%), Query Frame = 0 

Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFG XXXXXXXXXXX TTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGXXXXXXXXXXXXXTTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E   VV+++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]
BLAST of Carg10515 vs. TrEMBL
Match: tr|A0A0A0KIW7|A0A0A0KIW7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G476670 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.5e-70
Identity = 148/172 (86.05%), Postives = 157/172 (91.28%), Query Frame = 0 

Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFG XXXXXXXXXXX TTILLASYYCTRNGLSS+ V     N
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGXXXXXXXXXXXXXTTILLASYYCTRNGLSSSVVQRTPPN 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA GE   VV+D+GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]
BLAST of Carg10515 vs. TrEMBL
Match: tr|A0A2R6RA30|A0A2R6RA30_ACTCH (RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc16963 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.3e-54
Identity = 109/169 (64.50%), Postives = 128/169 (75.74%), Query Frame = 0 

Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MN     SGGFL S N+GGFGY           ITTI LASY+CTR  +S+  V E N  
Sbjct: 1   MNTTAGGSGGFLGSENVGGFGYTIGVSVGILLLITTITLASYFCTR--VSTPPVGEANRQ 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
             PP  + +  VV++VGLD+ T+ SYP+LLYSEAKL K D++A+CCSICLADYK S++LR
Sbjct: 61  HEPP--DQQPCVVVEVGLDEATLGSYPRLLYSEAKLKKKDTTATCCSICLADYKGSDMLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASR 170
            LPDCGHLFHLKC+DPWLRLHPTCP+CRTSP+PTPLSTPLAE VPLASR
Sbjct: 121 LLPDCGHLFHLKCVDPWLRLHPTCPMCRTSPVPTPLSTPLAEVVPLASR 165

[Close]
BLAST of Carg10515 vs. TrEMBL
Match: tr|W9S683|W9S683_9ROSA (RING-H2 finger protein ATL70 OS=Morus notabilis OX=981085 GN=L484_016910 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.1e-53
Identity = 122/172 (70.93%), Postives = 138/172 (80.23%), Query Frame = 0 

Query: 3   NGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGL--SSTSVVERNSN 62
           N T D+GGFL SN+IGGFG XXXXXXXXXX IT+I LASY+CTR+ L  SS +   RN  
Sbjct: 2   NATGDTGGFLGSNDIGGFGXXXXXXXXXXXLITSITLASYFCTRSQLPPSSAAAARRNVG 61

Query: 63  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLK-NDSSASCCSICLADYKNSNVL 122
            +          VIDVGLD+ TIKSYPKL YSEAKL K N +S+SCCSICLADYK +++L
Sbjct: 62  PANNPEPNLPNFVIDVGLDEATIKSYPKLPYSEAKLHKANSTSSSCCSICLADYKTTDML 121

Query: 123 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFH+KC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLA+RRD
Sbjct: 122 RQLPDCGHLFHVKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLATRRD 173

[Close]
BLAST of Carg10515 vs. TrEMBL
Match: tr|A0A2P5FKT5|A0A2P5FKT5_9ROSA (43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_059410 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.1e-52
Identity = 117/176 (66.48%), Postives = 136/176 (77.27%), Query Frame = 0 

Query: 3   NGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSV-------V 62
           N T D GGFL SN+IGGFG XXXXXXXXXX IT+I LASY+CTR+ L   +V       +
Sbjct: 2   NSTGDYGGFLGSNDIGGFGXXXXXXXXXXXLITSITLASYFCTRSQLPPQAVSGHGGRGL 61

Query: 63  ERNSNRSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKN 122
           E   N   P        V+DVGLD+ TI+SYPKL YSEAKL K +S+++CCSICL DYK 
Sbjct: 62  EGGRNAREPPDSQSPSFVVDVGLDEATIRSYPKLPYSEAKLKKTNSTSTCCSICLGDYKA 121

Query: 123 SNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           +++LR LPDCGHLFH+KC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLA+RRD
Sbjct: 122 TDMLRQLPDCGHLFHVKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLATRRD 177

The following BLAST results are available for this feature:
BLAST of Carg10515 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022977896.11.8e-8398.25RING-H2 finger protein ATL70-like [Cucurbita maxima][more]
XP_023544988.13.0e-8398.25RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo][more]
XP_022925965.18.7e-8397.66RING-H2 finger protein ATL70-like [Cucurbita moschata][more]
XP_008462625.14.5e-7185.47PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo][more]
XP_004143342.12.2e-7086.05PREDICTED: RING-H2 finger protein ATL70-like [Cucumis sativus] >KGN48327.1 hypot... [more]
BLAST of Carg10515 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G06490.11.6e-3846.45RING/U-box superfamily protein[more]
AT2G35910.11.1e-3675.00RING/U-box superfamily protein[more]
AT2G46160.11.9e-2339.24RING/U-box superfamily protein[more]
AT5G07040.11.8e-2144.68RING/U-box superfamily protein[more]
AT2G25410.12.8e-1939.67RING/U-box superfamily protein[more]
BLAST of Carg10515 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FG21|ATL71_ARATH2.9e-3746.45Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P... [more]
sp|Q8RX29|ATL70_ARATH2.1e-3575.00RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1[more]
sp|O82353|ATL67_ARATH3.4e-2239.24RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1[more]
sp|Q9FL42|ATL69_ARATH3.2e-2044.68Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P... [more]
sp|Q9SKK8|ATL22_ARATH5.1e-1839.67RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2[more]
BLAST of Carg10515 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CHE9|A0A1S3CHE9_CUCME3.0e-7185.47RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 S... [more]
tr|A0A0A0KIW7|A0A0A0KIW7_CUCSA1.5e-7086.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G476670 PE=4 SV=1[more]
tr|A0A2R6RA30|A0A2R6RA30_ACTCH4.3e-5464.50RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00... [more]
tr|W9S683|W9S683_9ROSA2.1e-5370.93RING-H2 finger protein ATL70 OS=Morus notabilis OX=981085 GN=L484_016910 PE=4 SV... [more]
tr|A0A2P5FKT5|A0A2P5FKT5_9ROSA3.1e-5266.4843kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_059410 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10515-RACarg10515-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 106..147
e-value: 1.4E-7
score: 41.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 105..148
e-value: 1.1E-12
score: 47.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 106..148
score: 12.947
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 68..152
e-value: 9.3E-22
score: 78.5
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 7..164
NoneNo IPR availablePANTHERPTHR14155:SF279SUBFAMILY NOT NAMEDcoord: 7..164
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 105..148
e-value: 3.30531E-19
score: 76.1865
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 82..153

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10515Cla008404Watermelon (97103) v1carwmB0226
Carg10515Csa6G476670Cucumber (Chinese Long) v2carcuB0268
Carg10515MELO3C024590Melon (DHL92) v3.5.1carmeB0242
Carg10515MELO3C009554Melon (DHL92) v3.5.1carmeB0241
Carg10515ClCG01G015050Watermelon (Charleston Gray)carwcgB0230
Carg10515ClCG10G018180Watermelon (Charleston Gray)carwcgB0229
Carg10515CSPI03G35770Wild cucumber (PI 183967)carcpiB0269
Carg10515CSPI06G26130Wild cucumber (PI 183967)carcpiB0272
Carg10515Cucsa.242010Cucumber (Gy14) v1carcgyB0282
Carg10515Cucsa.083830Cucumber (Gy14) v1carcgyB0279
Carg10515CmaCh07G008210Cucurbita maxima (Rimu)carcmaB0335
Carg10515CmaCh14G003690Cucurbita maxima (Rimu)carcmaB0331
Carg10515CmoCh03G011060Cucurbita moschata (Rifu)carcmoB0336
Carg10515CmoCh07G008490Cucurbita moschata (Rifu)carcmoB0338
Carg10515CmoCh14G003690Cucurbita moschata (Rifu)carcmoB0334
Carg10515Lsi03G018060Bottle gourd (USVL1VR-Ls)carlsiB215
Carg10515Lsi01G011800Bottle gourd (USVL1VR-Ls)carlsiB214
Carg10515Cp4.1LG10g03770Cucurbita pepo (Zucchini)carcpeB0337
Carg10515Cp4.1LG03g00390Cucurbita pepo (Zucchini)carcpeB0339
Carg10515Cp4.1LG19g04800Cucurbita pepo (Zucchini)carcpeB0338
Carg10515CsGy3G033240Cucumber (Gy14) v2carcgybB0254
Carg10515CsGy6G025510Cucumber (Gy14) v2carcgybB0255
Carg10515MELO3C024590.2Melon (DHL92) v3.6.1carmedB0250
Carg10515MELO3C009554.2Melon (DHL92) v3.6.1carmedB0249
Carg10515CsaV3_6G041160Cucumber (Chinese Long) v3carcucB0270
Carg10515CsaV3_3G038130Cucumber (Chinese Long) v3carcucB0269
Carg10515Cla97C01G014050Watermelon (97103) v2carwmbB0239
Carg10515Cla97C10G201150Watermelon (97103) v2carwmbB0240
Carg10515Bhi03G001373Wax gourdcarwgoB0305
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10515Carg03615Silver-seed gourdcarcarB276
Carg10515Carg05332Silver-seed gourdcarcarB280
The following block(s) are covering this gene:
GeneOrganismBlock
Carg10515Cucumber (Chinese Long) v2carcuB0267
Carg10515Cucurbita maxima (Rimu)carcmaB0333
Carg10515Wild cucumber (PI 183967)carcpiB0271