Carg10515-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10515-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING-H2 finger protein
Location	Cucurbita_argyrosperma_scaffold_098 : 574500 .. 575015 (+)
Sequence length	516

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGGAGTCGTCATCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTCCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

mRNA sequence

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGGAGTCGTCATCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTCCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Coding sequence (CDS)

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGGAGTCGTCATCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTCCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Protein sequence

MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD

Homology

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BLAST of Carg10515-RA vs. NCBI nr
Match: XP_022977896.1 (RING-H2 finger protein ATL70-like [Cucurbita maxima])

HSP 1 Score: 318.2 bits (814), Expect = 1.8e-83
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERN+N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNTN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA VV+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Carg10515-RA vs. NCBI nr
Match: XP_023544988.1 (RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.4 bits (812), Expect = 3.0e-83
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXX TTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXXTTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA VV+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Carg10515-RA vs. NCBI nr
Match: XP_022925965.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata])

HSP 1 Score: 315.8 bits (808), Expect = 8.7e-83
Identity = 167/171 (97.66%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXX TTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXXTTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA  V+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Carg10515-RA vs. NCBI nr
Match: XP_008462625.1 (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 4.5e-71
Identity = 147/172 (85.47%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFG XXXXXXXXXXX TTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGXXXXXXXXXXXXXTTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E   VV+++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Carg10515-RA vs. NCBI nr
Match: XP_004143342.1 (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis sativus] >KGN48327.1 hypothetical protein Csa_6G476670 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 2.2e-70
Identity = 148/172 (86.05%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFG XXXXXXXXXXX TTILLASYYCTRNGLSS+ V     N
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGXXXXXXXXXXXXXTTILLASYYCTRNGLSSSVVQRTPPN 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA GE   VV+D+GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Carg10515-RA vs. TAIR10
Match: AT5G06490.1 (RING/U-box superfamily protein)

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-38
Identity = 85/183 (46.45%), Postives = 111/183 (60.66%), Query Frame = 0


Query: 8   SGGFL-SSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L +++ +GG  Y           ITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAGVVIDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +  VV  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]

BLAST of Carg10515-RA vs. TAIR10
Match: AT2G35910.1 (RING/U-box superfamily protein)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-36
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 77  GLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDP 136
           GLD++TI+SYPK+LYSEA   K  ++ASCC+ICL DYK  ++LR LPDC HLFHLKCID 
Sbjct: 121 GLDEDTIQSYPKILYSEA---KGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDT 180

Query: 137 WLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
           WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 181 WLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of Carg10515-RA vs. TAIR10
Match: AT2G46160.1 (RING/U-box superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-23
Identity = 62/158 (39.24%), Postives = 84/158 (53.16%), Query Frame = 0


Query: 19  GFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSNR-------------SPPQ 78
           GFGY           ++T+LL+SY C R+    T+ VE   +R                 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  AEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSAS----------CCSICLADYKN 138
            + EAG V+ VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK 
Sbjct: 94  EDLEAGDVV-VGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKE 153

Query: 139 SNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP 154
           + +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P
Sbjct: 154 AEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLP 185

[Close]

BLAST of Carg10515-RA vs. TAIR10
Match: AT5G07040.1 (RING/U-box superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-21
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 74  IDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKC 133
           + +GLD+  I+SYP+++  +++ L   ++   CSICL DY+    +R +P+C H FH  C
Sbjct: 63  VKLGLDRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDC 122

Query: 134 IDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           +D WLR   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 123 VDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Carg10515-RA vs. TAIR10
Match: AT2G25410.1 (RING/U-box superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-19
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 36  TILLASYYCTRNGLSS---TSVVERNSNRSPPQAEGEAGVVIDVGLDQETIKSYPKLLYS 95
           T  +    C+   +SS    +VV R S     Q   E   V  +GLD+ TI+SY K+   
Sbjct: 257 TFCVGLVMCSSERVSSQIQQAVVARLSGSVTSQPSNE---VARIGLDESTIESYKKVELG 316

Query: 96  EAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPI 154
           E++ L   S+   C ICL++Y     +R LP+C H FH +CID WL+LH +CPVCR++P 
Sbjct: 317 ESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRSNPS 374

[Close]

BLAST of Carg10515-RA vs. Swiss-Prot
Match: sp|Q9FG21|ATL71_ARATH (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.9e-37
Identity = 85/183 (46.45%), Postives = 111/183 (60.66%), Query Frame = 0


Query: 8   SGGFL-SSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L +++ +GG  Y           ITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAGVVIDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +  VV  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]

BLAST of Carg10515-RA vs. Swiss-Prot
Match: sp|Q8RX29|ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-35
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 77  GLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDP 136
           GLD++TI+SYPK+LYSEA   K  ++ASCC+ICL DYK  ++LR LPDC HLFHLKCID 
Sbjct: 121 GLDEDTIQSYPKILYSEA---KGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDT 180

Query: 137 WLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
           WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 181 WLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of Carg10515-RA vs. Swiss-Prot
Match: sp|O82353|ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-22
Identity = 62/158 (39.24%), Postives = 84/158 (53.16%), Query Frame = 0


Query: 19  GFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSNR-------------SPPQ 78
           GFGY           ++T+LL+SY C R+    T+ VE   +R                 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  AEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSAS----------CCSICLADYKN 138
            + EAG V+ VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK 
Sbjct: 94  EDLEAGDVV-VGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKE 153

Query: 139 SNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP 154
           + +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P
Sbjct: 154 AEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLP 185

[Close]

BLAST of Carg10515-RA vs. Swiss-Prot
Match: sp|Q9FL42|ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-20
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 74  IDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKC 133
           + +GLD+  I+SYP+++  +++ L   ++   CSICL DY+    +R +P+C H FH  C
Sbjct: 63  VKLGLDRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDC 122

Query: 134 IDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           +D WLR   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 123 VDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Carg10515-RA vs. Swiss-Prot
Match: sp|Q9SKK8|ATL22_ARATH (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.1e-18
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 36  TILLASYYCTRNGLSS---TSVVERNSNRSPPQAEGEAGVVIDVGLDQETIKSYPKLLYS 95
           T  +    C+   +SS    +VV R S     Q   E   V  +GLD+ TI+SY K+   
Sbjct: 257 TFCVGLVMCSSERVSSQIQQAVVARLSGSVTSQPSNE---VARIGLDESTIESYKKVELG 316

Query: 96  EAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPI 154
           E++ L   S+   C ICL++Y     +R LP+C H FH +CID WL+LH +CPVCR++P 
Sbjct: 317 ESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRSNPS 374

[Close]

BLAST of Carg10515-RA vs. TrEMBL
Match: tr|A0A1S3CHE9|A0A1S3CHE9_CUCME (RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 3.0e-71
Identity = 147/172 (85.47%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFG XXXXXXXXXXX TTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGXXXXXXXXXXXXXTTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E   VV+++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Carg10515-RA vs. TrEMBL
Match: tr|A0A0A0KIW7|A0A0A0KIW7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G476670 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.5e-70
Identity = 148/172 (86.05%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFG XXXXXXXXXXX TTILLASYYCTRNGLSS+ V     N
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGXXXXXXXXXXXXXTTILLASYYCTRNGLSSSVVQRTPPN 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA GE   VV+D+GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Carg10515-RA vs. TrEMBL
Match: tr|A0A2R6RA30|A0A2R6RA30_ACTCH (RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc16963 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.3e-54
Identity = 109/169 (64.50%), Postives = 128/169 (75.74%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSVVERNSN 60
           MN     SGGFL S N+GGFGY           ITTI LASY+CTR  +S+  V E N  
Sbjct: 1   MNTTAGGSGGFLGSENVGGFGYTIGVSVGILLLITTITLASYFCTR--VSTPPVGEANRQ 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
             PP  + +  VV++VGLD+ T+ SYP+LLYSEAKL K D++A+CCSICLADYK S++LR
Sbjct: 61  HEPP--DQQPCVVVEVGLDEATLGSYPRLLYSEAKLKKKDTTATCCSICLADYKGSDMLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASR 170
            LPDCGHLFHLKC+DPWLRLHPTCP+CRTSP+PTPLSTPLAE VPLASR
Sbjct: 121 LLPDCGHLFHLKCVDPWLRLHPTCPMCRTSPVPTPLSTPLAEVVPLASR 165

[Close]

BLAST of Carg10515-RA vs. TrEMBL
Match: tr|W9S683|W9S683_9ROSA (RING-H2 finger protein ATL70 OS=Morus notabilis OX=981085 GN=L484_016910 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.1e-53
Identity = 122/172 (70.93%), Postives = 138/172 (80.23%), Query Frame = 0


Query: 3   NGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGL--SSTSVVERNSN 62
           N T D+GGFL SN+IGGFG XXXXXXXXXX IT+I LASY+CTR+ L  SS +   RN  
Sbjct: 2   NATGDTGGFLGSNDIGGFGXXXXXXXXXXXLITSITLASYFCTRSQLPPSSAAAARRNVG 61

Query: 63  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLK-NDSSASCCSICLADYKNSNVL 122
            +          VIDVGLD+ TIKSYPKL YSEAKL K N +S+SCCSICLADYK +++L
Sbjct: 62  PANNPEPNLPNFVIDVGLDEATIKSYPKLPYSEAKLHKANSTSSSCCSICLADYKTTDML 121

Query: 123 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           R LPDCGHLFH+KC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLA+RRD
Sbjct: 122 RQLPDCGHLFHVKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLATRRD 173

[Close]

BLAST of Carg10515-RA vs. TrEMBL
Match: tr|A0A2P5FKT5|A0A2P5FKT5_9ROSA (43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_059410 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.1e-52
Identity = 117/176 (66.48%), Postives = 136/176 (77.27%), Query Frame = 0


Query: 3   NGTADSGGFLSSNNIGGFGYXXXXXXXXXXXITTILLASYYCTRNGLSSTSV-------V 62
           N T D GGFL SN+IGGFG XXXXXXXXXX IT+I LASY+CTR+ L   +V       +
Sbjct: 2   NSTGDYGGFLGSNDIGGFGXXXXXXXXXXXLITSITLASYFCTRSQLPPQAVSGHGGRGL 61

Query: 63  ERNSNRSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKN 122
           E   N   P        V+DVGLD+ TI+SYPKL YSEAKL K +S+++CCSICL DYK 
Sbjct: 62  EGGRNAREPPDSQSPSFVVDVGLDEATIRSYPKLPYSEAKLKKTNSTSTCCSICLGDYKA 121

Query: 123 SNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
           +++LR LPDCGHLFH+KC+DPWLRLHPTCPVCRTSPIPTPLSTPLAE VPLA+RRD
Sbjct: 122 TDMLRQLPDCGHLFHVKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLATRRD 177

The following BLAST results are available for this feature:

BLAST of Carg10515-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977896.1	1.8e-83	98.25	RING-H2 finger protein ATL70-like [Cucurbita maxima]	[more]
XP_023544988.1	3.0e-83	98.25	RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo]	[more]
XP_022925965.1	8.7e-83	97.66	RING-H2 finger protein ATL70-like [Cucurbita moschata]	[more]
XP_008462625.1	4.5e-71	85.47	PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo]	[more]
XP_004143342.1	2.2e-70	86.05	PREDICTED: RING-H2 finger protein ATL70-like [Cucumis sativus] >KGN48327.1 hypot...	[more]

BLAST of Carg10515-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06490.1	1.6e-38	46.45	RING/U-box superfamily protein	[more]
AT2G35910.1	1.1e-36	75.00	RING/U-box superfamily protein	[more]
AT2G46160.1	1.9e-23	39.24	RING/U-box superfamily protein	[more]
AT5G07040.1	1.8e-21	44.68	RING/U-box superfamily protein	[more]
AT2G25410.1	2.8e-19	39.67	RING/U-box superfamily protein	[more]

BLAST of Carg10515-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FG21\|ATL71_ARATH	2.9e-37	46.45	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
sp\|Q8RX29\|ATL70_ARATH	2.1e-35	75.00	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
sp\|O82353\|ATL67_ARATH	3.4e-22	39.24	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
sp\|Q9FL42\|ATL69_ARATH	3.2e-20	44.68	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
sp\|Q9SKK8\|ATL22_ARATH	5.1e-18	39.67	RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2	[more]

BLAST of Carg10515-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CHE9\|A0A1S3CHE9_CUCME	3.0e-71	85.47	RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 S...	[more]
tr\|A0A0A0KIW7\|A0A0A0KIW7_CUCSA	1.5e-70	86.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G476670 PE=4 SV=1	[more]
tr\|A0A2R6RA30\|A0A2R6RA30_ACTCH	4.3e-54	64.50	RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00...	[more]
tr\|W9S683\|W9S683_9ROSA	2.1e-53	70.93	RING-H2 finger protein ATL70 OS=Morus notabilis OX=981085 GN=L484_016910 PE=4 SV...	[more]
tr\|A0A2P5FKT5\|A0A2P5FKT5_9ROSA	3.1e-52	66.48	43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_059410 PE=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg10515	Carg10515	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10515-RA.exon.1	Carg10515-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10515-RA.CDS.1	Carg10515-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg10515-RA	Carg10515-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 106..147 e-value: 1.4E-7 score: 41.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 105..148 e-value: 1.1E-12 score: 47.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 106..148 score: 12.947
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 68..152 e-value: 9.3E-22 score: 78.5
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 7..164
None	No IPR available	PANTHER	PTHR14155:SF279	SUBFAMILY NOT NAMED	coord: 7..164
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 105..148 e-value: 3.30531E-19 score: 76.1865
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 82..153