CmoCh03G006920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G006920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nucleic acid binding protein, putative
Location	Cmo_Chr03 : 6051153 .. 6054193 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAGAAACTCAAACCGGGAAAAATTGAATCCAGCTAATGGTGCGAATAAGCCAATCGCTTCTGAAGGAAGCGGGCTCTGGTCTCACCAAAACTCTCTCCGAGATCCTGGTCTGCCCTCTCTCCAAACAACCTCTAAGGTGATGGTTCCATTTGAATTCATCATTTTTTCCTTCATTCTCCTCAATCTGTTGTGCATAATTTGGTTTCATTGTCTGTTTTGATCATTAGGTATTGCGAGGCGTCGAATTCTCTAATCAGCGATACGATTCGTGTTTCTTTCCCTGTAAGTACATCAACATCGGCTTCAATTGTGCAAAATATGAATTCCAGTATAATTCTTCGCCTATGGCCATTTTCTGTTTTTTCATTCTGATTTTCCTTTTCGATACTAGCTCTCGGTTCATTTTTTTGGTCATCTAGAGTGCGTAGCTGCTATTCGACTTGCTAGCGAAAGCTTACGTTAACTCTTGAGTCATATTAAGACCTACCTACTGGTAGATCAAGACATTCCTTGGTTTCATTAGTTTAATGAAGTATTTCTCAGTTTTTCTGGATTAGGTAGTAAAAATGGCTGTGGGAACCAGAAAGTAGTGTTCAAACCCTCCCTTCATCCGTGGAGTTAGGTTATATAGGTCATGTGCCTGTTTCTATTGTATGTTGTAATTTTACTTATGGTTGTGTTAGATAAGGGGCGGAGTTCCTTGCTTGGTGCCAAAGGAAGGAAGGATAATCGAAACTGACGATGGATTGAAAGGTGAGGATACCGTCGAGATTCCTCGAGAAAAATGAGCTATGCTTGTTTGGGAGCGGAAGACAATTTTTATTTCTTGAGCTGAATAGTGAGAATAGATGTCAACCTAATGGCACTACACCTGTGTGTTTATGCTTTGAAGTTTCCACTTTAGAATGATTTGAATGGTCTCATTTCCTGAAAATTTCTGGCGTTGCCCAATAAAATAGTCAGATCAGACTACTTGTCCATCTTTCTTTTGTACTCTTTTCTAGCGATTGGGGTAGGTTAAACAGAATATCTAATTTTTTCTGCTTAAAACTTTTGGGCTTGTGTTGAATTGTCTGAGGGTGAATCGTTTCTTTAGCTTTTACTGACATGGAAGGGCATCGTTGGATGATCATCTCTTTAGTTCTCGGAAAATAAACTTTCGTGTTCAGATCAAGTCAACCATGATCTCCTTTACATTGTTCTGTTTGGGTTAGGACACACGCCAGTTTGGTAAACATCGGGTTGTTCTATGTAAAAACACGGTGTGCATGGTATGGAACATGCTAAGGACAACGAAATTATTACTTATTATAGTTGATTACATGTTCGGCATGAATGTAAGTGGTTCATCATAGGAAAGTTTTTTTAGTTTATCTTGCATGTTCATCATAATCACAATTATGATGAAGAAAGTGCGTTCAATATTCAATAGTTATCAACTCAACGATAATTAGCATGTACTCTCTCGGGGTCGAAAGTTCAAATCTTTATGCCCACTTGTTAGCATCGTTAGATTAAGATTTCTTCATACTATTGTCTAGTGGTTGTTCACCAGTTGTTCCAAGCCTTCAATTTAGTCTTAGGTTTAAGTTGGACACCATTTCTCCAGATATTTTTTTGATCTATCTTTCTTTAGGTCCTATCTTAGGAGCACTTGCATATCCTTTTATGGGGACGCTGGCATATCTCAATCAAGTTTCCTTTATGAAATGGTTATCATTTTTATCAAGTTAGCCGATGGGGTATAGCAGCTTATGTGCTCCAGGCATTTGACACTATAACTTGAAAGGTCAAGTGTAGTAATCTTGTTTAGGTGCAACCACTGTCTTTGAAATTTGAGGGTCTCCTTTCTCAATCTAACTACCATTCCTCAAACACAATTACCCCCTACTATTAAAGCACTATAATCAATTATCCTTCTTACCTTTAACTGAATGGAGTGCAGGACGATATTCTCCTCCTGCTATAACTTCATTGTCCTCGGATTGTTTCCAGGTATCAAAGATGCATTATCATGTGGTGATGTTATTGATTCATGTTTTATGAAGAGGGCCAAGGAGGAAGGTTGTGAAACTTCAGCACATCCAACCTTGGATGATGCTGCTATGGAGAGGGAGTGGTGTTCTGTGTGTTTGTCAAACGTAATGGAGAGAAAGGTAGCGCAAATTCTTCCTTGTCAGCACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTTCATGAATGCCAGAATCAGAAAACTTGCTCAATTTGTCGGTTTTGGGTGAGCGATGAAGATTGTCAACCAACAGAAGTGCTTACAGAGGAGATGGTAATATGGTCCACATCTTTACATGTTATCGATTACTAAACTGAACTGAAAGTTCTCGTCTATTTCCTCGGGTACCTAATAACCTTAGAGAGGGAGACAGAGAGAGTTCATGCGAGAAAACAATGGTTTGTGTTACATTCGGGAGAAATGCAGCACTATTAACTGGTATTGCAAATTCCCATTTTCATAAATATTTGTTCCAAACCGTATCAAATAAAATAAAGATATCTCGAGCAAAATAATATCAACCTCCGAAGTTCCTAATGCAGCATTTAAAGTTGGAAGGTATTTATAGAGCAAATGACAGGGAAAGTTTCCTAAAATACAATAACAAAAGATGGAAAGAAGAACCTTCAAGATAGAAGAACGTCAGTTGCAACCCAGCCTCCACAATATCCAACAAAAGCCAACCAACCTCTCTTGATTCACCTTGCAGAAACAAAAAGCCAAACCTTCTAGTTCTTACTCGAATCATCGTGTTCTCTCATCTTAGAACTCGAAGTACTCTGACCCCGAAGATATAAAGAAAAAACAAGCTGAGGGGCAGCCAGAGGGAAGCAAATCAAAATTCTCCACATTAAGTAACATGCCATCATCATTCATCACCAAAAACGAAAATCACAACAAAAAAGAACATGAACTTGAGAAACAAGTCATGCCAGCCAGCCAGCCAGCCAACAGCAGCCCACAAAACCATAAATGCATCCCTCCACCACAAAAGGAACTTCTG

mRNA sequence

AGCAGAAACTCAAACCGGGAAAAATTGAATCCAGCTAATGGTGCGAATAAGCCAATCGCTTCTGAAGGAAGCGGGCTCTGGTCTCACCAAAACTCTCTCCGAGATCCTGGTCTGCCCTCTCTCCAAACAACCTCTAAGGTATTGCGAGGCGTCGAATTCTCTAATCAGCGATACGATTCGTGTTTCTTTCCCTATAAGGGGCGGAGTTCCTTGCTTGGTGCCAAAGGAAGGAAGGATAATCGAAACTGACGATGGATTGAAAGGTATCAAAGATGCATTATCATGTGGTGATGTTATTGATTCATGTTTTATGAAGAGGGCCAAGGAGGAAGGTTGTGAAACTTCAGCACATCCAACCTTGGATGATGCTGCTATGGAGAGGGAGTGGTGTTCTGTGTGTTTGTCAAACGTAATGGAGAGAAAGGTAGCGCAAATTCTTCCTTGTCAGCACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTTCATGAATGCCAGAATCAGAAAACTTGCTCAATTTGTCGGTTTTGGGTGAGCGATGAAGATTGTCAACCAACAGAAGTGCTTACAGAGGAGATGGTAATATGGTCCACATCTTTACATGTTATCGATTACTAAACTGAACTGAAAGTTCTCGTCTATTTCCTCGGGTACCTAATAACCTTAGAGAGGGAGACAGAGAGAGTTCATGCGAGAAAACAATGGTTTGTGTTACATTCGGGAGAAATGCAGCACTATTAACTGGTATTGCAAATTCCCATTTTCATAAATATTTGTTCCAAACCGTATCAAATAAAATAAAGATATCTCGAGCAAAATAATATCAACCTCCGAAGTTCCTAATGCAGCATTTAAAGTTGGAAGGTATTTATAGAGCAAATGACAGGGAAAGTTTCCTAAAATACAATAACAAAAGATGGAAAGAAGAACCTTCAAGATAGAAGAACGTCAGTTGCAACCCAGCCTCCACAATATCCAACAAAAGCCAACCAACCTCTCTTGATTCACCTTGCAGAAACAAAAAGCCAAACCTTCTAGTTCTTACTCGAATCATCGTGTTCTCTCATCTTAGAACTCGAAGTACTCTGACCCCGAAGATATAAAGAAAAAACAAGCTGAGGGGCAGCCAGAGGGAAGCAAATCAAAATTCTCCACATTAAGTAACATGCCATCATCATTCATCACCAAAAACGAAAATCACAACAAAAAAGAACATGAACTTGAGAAACAAGTCATGCCAGCCAGCCAGCCAGCCAACAGCAGCCCACAAAACCATAAATGCATCCCTCCACCACAAAAGGAACTTCTG

Coding sequence (CDS)

ATGGTGCGAATAAGCCAATCGCTTCTGAAGGAAGCGGGCTCTGGTCTCACCAAAACTCTCTCCGAGATCCTGGTCTGCCCTCTCTCCAAACAACCTCTAAGGTATTGCGAGGCGTCGAATTCTCTAATCAGCGATACGATTCGTGTTTCTTTCCCTATAAGGGGCGGAGTTCCTTGCTTGGTGCCAAAGGAAGGAAGGATAATCGAAACTGACGATGGATTGAAAGGTATCAAAGATGCATTATCATGTGGTGATGTTATTGATTCATGTTTTATGAAGAGGGCCAAGGAGGAAGGTTGTGAAACTTCAGCACATCCAACCTTGGATGATGCTGCTATGGAGAGGGAGTGGTGTTCTGTGTGTTTGTCAAACGTAATGGAGAGAAAGGTAGCGCAAATTCTTCCTTGTCAGCACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTTCATGAATGCCAGAATCAGAAAACTTGCTCAATTTGTCGGTTTTGGGTGAGCGATGAAGATTGTCAACCAACAGAAGTGCTTACAGAGGAGATGGTAATATGGTCCACATCTTTACATGTTATCGATTACTAA

Homology

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BLAST of CmoCh03G006920 vs. Swiss-Prot
Match: Y3545_HYPNA (UPF0434 protein HNE_3545 OS=Hyphomonas neptunium (strain ATCC 15444) GN=HNE_3545 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.3e-09
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 7  SLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCLVPKEGR 66
          S+L EA +G+   L EIL+CP ++QPL Y  A + L+S   R+++PIRGG+P ++ +E R
Sbjct: 13 SVLFEA-NGVDPRLLEILICPATRQPLAYDRARHELVSKNARLAYPIRGGIPIMLEEEAR 72

Query: 67 IIETDDGLKG 77
           ++  +G  G
Sbjct: 73 DLDDTEGTAG 81

[Close]

BLAST of CmoCh03G006920 vs. Swiss-Prot
Match: PREY_XENTR (Protein preY, mitochondrial OS=Xenopus tropicalis GN=pyurf PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-08
Identity = 24/53 (45.28%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 19  TLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCLVPKEGRIIETD 72
           TL + LVCPLS++ LRY E++N LI+D + +++PI  G+P ++P++ R+I  D
Sbjct: 58  TLLQFLVCPLSRKSLRYEESTNELINDELGIAYPIVDGIPNMIPQDARMIHKD 110

[Close]

BLAST of CmoCh03G006920 vs. Swiss-Prot
Match: Y313_BRASO (UPF0434 protein BRADO0313 OS=Bradyrhizobium sp. (strain ORS278) GN=BRADO0313 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-07
Identity = 25/61 (40.98%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 9  LKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCLVPKEGRII 68
          L+   + +   L EILVCP++K PL Y  A   LIS + ++++PIR G+P ++P+E R I
Sbjct: 5  LERPANSVDPKLLEILVCPMTKGPLEYDAARQELISRSAKLAYPIRDGIPIMLPEEARKI 64

Query: 69 E 70
          +
Sbjct: 65 D 65

[Close]

BLAST of CmoCh03G006920 vs. Swiss-Prot
Match: Y130_EHRRW (UPF0434 protein Erum1340/ERWE_CDS_01300 OS=Ehrlichia ruminantium (strain Welgevonden) GN=Erum1340 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.7e-07
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1


Query: 16 LTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCLVPKEGRIIE 70
          + K L EILVCPL+K+ L Y + +N LIS   +++FPIR G+P ++  E R +E
Sbjct: 2  IDKKLLEILVCPLTKEKLEYNKDTNELISQKAKLAFPIRNGIPIMLVDEARKLE 55

[Close]

BLAST of CmoCh03G006920 vs. Swiss-Prot
Match: Y126_EHRRG (UPF0434 protein ERGA_CDS_01260 OS=Ehrlichia ruminantium (strain Gardel) GN=ERGA_CDS_01260 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.7e-07
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1


Query: 16 LTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCLVPKEGRIIE 70
          + K L EILVCPL+K+ L Y + +N LIS   +++FPIR G+P ++  E R +E
Sbjct: 2  IDKKLLEILVCPLTKEKLEYNKDTNELISQKAKLAFPIRNGIPIMLVDEARKLE 55

[Close]

BLAST of CmoCh03G006920 vs. TrEMBL
Match: A0A0A0KHC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507170 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-26
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 1


Query: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
          MVRI+++LLKEA SG T TLS+ILVCPLSKQPLRYC ASNSLISDTI VSFPIR G+PCL
Sbjct: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDTIGVSFPIRDGIPCL 60

Query: 61 VPKEGRIIETDDGLK 76
          VPKEGRIIE DD LK
Sbjct: 61 VPKEGRIIENDDALK 75

[Close]

BLAST of CmoCh03G006920 vs. TrEMBL
Match: B9SYS9_RICCO (Protein preY, mitochondrial, putative OS=Ricinus communis GN=RCOM_0362130 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 59/94 (62.77%), Postives = 77/94 (81.91%), Query Frame = 1


Query: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
          MVR+S++LLKEAG+G+ KTLSEILVCPLSKQPLR CEA+NSLISD I VS+PI+ G+PCL
Sbjct: 1  MVRLSRTLLKEAGNGINKTLSEILVCPLSKQPLRICEATNSLISDAIGVSYPIKDGIPCL 60

Query: 61 VPKEGRIIETDDGLKGIKDALSCGDVIDSCFMKR 95
          VP +G+I+ETD+  K  +D+++     DS F K+
Sbjct: 61 VPLDGKILETDEEKK--QDSVA----TDSSFTKQ 88

[Close]

BLAST of CmoCh03G006920 vs. TrEMBL
Match: A0A078IA93_BRANA (BnaAnng08300D protein OS=Brassica napus GN=BnaAnng08300D PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.7e-21
Identity = 50/71 (70.42%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
          MVRIS+ +LKEAG+ + KTLSEILVCPLSKQPLR+CE + SL+SDTI VSFPI+ G+PCL
Sbjct: 1  MVRISRVMLKEAGNAIDKTLSEILVCPLSKQPLRFCEKTKSLVSDTIGVSFPIKDGIPCL 60

Query: 61 VPKEGRIIETD 72
          VPK+G+I++ D
Sbjct: 61 VPKDGKILDED 71

[Close]

BLAST of CmoCh03G006920 vs. TrEMBL
Match: M4DMK1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.7e-21
Identity = 50/71 (70.42%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
          MVRIS+ +LKEAG+ + KTLSEILVCPLSKQPLR+CE + SL+SDTI VSFPI+ G+PCL
Sbjct: 1  MVRISRVMLKEAGNAIDKTLSEILVCPLSKQPLRFCEKTKSLVSDTIGVSFPIKDGIPCL 60

Query: 61 VPKEGRIIETD 72
          VPK+G+I++ D
Sbjct: 61 VPKDGKILDED 71

[Close]

BLAST of CmoCh03G006920 vs. TrEMBL
Match: V4UH54_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026827mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 52/72 (72.22%), Postives = 65/72 (90.28%), Query Frame = 1


Query: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
          MVRIS++LLKEAG+GL+KTLSEILVCPL+KQPLR CE +NSLISD+I VSFPI+ G+P L
Sbjct: 14 MVRISKALLKEAGTGLSKTLSEILVCPLTKQPLRVCEETNSLISDSIGVSFPIKDGIPSL 73

Query: 61 VPKEGRIIETDD 73
          VPK+G+I+  +D
Sbjct: 74 VPKDGKILGVND 85

[Close]

BLAST of CmoCh03G006920 vs. TAIR10
Match: AT4G35905.1 (AT4G35905.1 unknown protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-23
Identity = 48/71 (67.61%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
          MVR+++ LLK+AG+ + KTLSEILVCPLSKQPLR+CE + SL+SDTI VSFPI+ G+PCL
Sbjct: 1  MVRLNRVLLKDAGNVIDKTLSEILVCPLSKQPLRFCEKTKSLVSDTIGVSFPIKDGIPCL 60

Query: 61 VPKEGRIIETD 72
          VPK+G+I+E +
Sbjct: 61 VPKDGKILEEE 71

[Close]

BLAST of CmoCh03G006920 vs. TAIR10
Match: AT3G51325.1 (AT3G51325.1 RING/U-box superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-11
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1


Query: 114 EREWCSVCLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDCQPT 173
           E E CSVCL  +  + V + LPC HEFH +CV+ WF+    +  C +CRF        PT
Sbjct: 22  EEECCSVCLMRMEAKDVIKSLPCSHEFHSLCVDTWFN-VSRKICCPLCRF-------SPT 81

Query: 174 EV-LTEEMVIWSTSLH 189
            + LT+E+++W +S H
Sbjct: 82  TILLTDELLLWFSSFH 89

[Close]

BLAST of CmoCh03G006920 vs. TAIR10
Match: AT3G55530.1 (AT3G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-07
Identity = 26/75 (34.67%), Postives = 39/75 (52.00%), Query Frame = 1


Query: 95  AKEEGCETSAHPTLDDAAMEREW------CSVCLSNVMERKVAQILPCQHEFHKICVERW 154
           AK+    +SA   LD A   ++       CSVCL  V   ++ + LPC H+FH  C++ W
Sbjct: 182 AKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPW 241

Query: 155 FHECQNQKTCSICRF 164
             +   Q TC +C+F
Sbjct: 242 LRQ---QGTCPVCKF 253

[Close]

BLAST of CmoCh03G006920 vs. TAIR10
Match: AT1G15100.1 (AT1G15100.1 RING-H2 finger A2A)

HSP 1 Score: 51.2 bits (121), Expect = 8.1e-07
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 118 CSVCLSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCSICRFWVSDEDC 171
           C VCLS + E +  + L C+H FHK C+E W H  Q   TC +CR  +  +DC
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLH--QFNFTCPLCRSALVSDDC 136

[Close]

BLAST of CmoCh03G006920 vs. TAIR10
Match: AT3G16720.1 (AT3G16720.1 TOXICOS EN LEVADURA 2)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 1


Query: 118 CSVCLSNVMERKVAQILP-CQHEFHKICVERWFHECQNQKTCSICR 163
           C+VCLS   E +  ++LP CQH FH  C++ WFH   +  TC +CR
Sbjct: 119 CAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFH---SHSTCPLCR 161

[Close]

BLAST of CmoCh03G006920 vs. NCBI nr
Match: gi|659080560|ref|XP_008440859.1| (PREDICTED: protein preY, mitochondrial [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 3.5e-28
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
          MVRIS++LLKEA SG T TLS+ILVCPLSKQPLRYCEASNSLISDTI VSFPIR G+PCL
Sbjct: 1  MVRISKALLKEASSGFTNTLSQILVCPLSKQPLRYCEASNSLISDTIGVSFPIRDGIPCL 60

Query: 61 VPKEGRIIETDDGLKG 77
          VPKEGRIIE DD LKG
Sbjct: 61 VPKEGRIIENDDALKG 76

[Close]

BLAST of CmoCh03G006920 vs. NCBI nr
Match: gi|778719790|ref|XP_011658060.1| (PREDICTED: protein preY, mitochondrial [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-26
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 1


Query: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
          MVRI+++LLKEA SG T TLS+ILVCPLSKQPLRYC ASNSLISDTI VSFPIR G+PCL
Sbjct: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDTIGVSFPIRDGIPCL 60

Query: 61 VPKEGRIIETDDGLK 76
          VPKEGRIIE DD LK
Sbjct: 61 VPKEGRIIENDDALK 75

[Close]

BLAST of CmoCh03G006920 vs. NCBI nr
Match: gi|223529261|gb|EEF31233.1| (Protein preY, mitochondrial precursor, putative [Ricinus communis])

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 59/94 (62.77%), Postives = 77/94 (81.91%), Query Frame = 1


Query: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
          MVR+S++LLKEAG+G+ KTLSEILVCPLSKQPLR CEA+NSLISD I VS+PI+ G+PCL
Sbjct: 1  MVRLSRTLLKEAGNGINKTLSEILVCPLSKQPLRICEATNSLISDAIGVSYPIKDGIPCL 60

Query: 61 VPKEGRIIETDDGLKGIKDALSCGDVIDSCFMKR 95
          VP +G+I+ETD+  K  +D+++     DS F K+
Sbjct: 61 VPLDGKILETDEEKK--QDSVA----TDSSFTKQ 88

[Close]

BLAST of CmoCh03G006920 vs. NCBI nr
Match: gi|1000943050|ref|XP_002531148.2| (PREDICTED: UPF0434 protein Pmen_1615 [Ricinus communis])

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 59/94 (62.77%), Postives = 77/94 (81.91%), Query Frame = 1


Query: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
           MVR+S++LLKEAG+G+ KTLSEILVCPLSKQPLR CEA+NSLISD I VS+PI+ G+PCL
Sbjct: 18  MVRLSRTLLKEAGNGINKTLSEILVCPLSKQPLRICEATNSLISDAIGVSYPIKDGIPCL 77

Query: 61  VPKEGRIIETDDGLKGIKDALSCGDVIDSCFMKR 95
           VP +G+I+ETD+  K  +D+++     DS F K+
Sbjct: 78  VPLDGKILETDEEKK--QDSVA----TDSSFTKQ 105

[Close]

BLAST of CmoCh03G006920 vs. NCBI nr
Match: gi|1009144369|ref|XP_015889761.1| (PREDICTED: UPF0434 protein GDI0182/Gdia_2252 [Ziziphus jujuba])

HSP 1 Score: 113.6 bits (283), Expect = 3.8e-22
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1   MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60
           MVR+S  LLKEAGSGL KTLS+ILVCP+SKQPLR+CE +NSLISD I VSFPI+ G+PCL
Sbjct: 42  MVRVSAKLLKEAGSGLNKTLSQILVCPVSKQPLRFCEETNSLISDAIGVSFPIKDGIPCL 101

Query: 61  VPKEGRIIETDD 73
           VP++G+I++ +D
Sbjct: 102 VPQDGKILDIED 113

The following BLAST results are available for this feature:

BLAST of CmoCh03G006920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3545_HYPNA	6.3e-09	41.43	UPF0434 protein HNE_3545 OS=Hyphomonas neptunium (strain ATCC 15444) GN=HNE_3545...	[more]
PREY_XENTR	5.3e-08	45.28	Protein preY, mitochondrial OS=Xenopus tropicalis GN=pyurf PE=2 SV=1	[more]
Y313_BRASO	3.4e-07	40.98	UPF0434 protein BRADO0313 OS=Bradyrhizobium sp. (strain ORS278) GN=BRADO0313 PE=...	[more]
Y130_EHRRW	7.7e-07	46.30	UPF0434 protein Erum1340/ERWE_CDS_01300 OS=Ehrlichia ruminantium (strain Welgevo...	[more]
Y126_EHRRG	7.7e-07	46.30	UPF0434 protein ERGA_CDS_01260 OS=Ehrlichia ruminantium (strain Gardel) GN=ERGA_...	[more]

BLAST of CmoCh03G006920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHC1_CUCSA	2.3e-26	82.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507170 PE=4 SV=1	[more]
B9SYS9_RICCO	1.4e-23	62.77	Protein preY, mitochondrial, putative OS=Ricinus communis GN=RCOM_0362130 PE=4 S...	[more]
A0A078IA93_BRANA	1.7e-21	70.42	BnaAnng08300D protein OS=Brassica napus GN=BnaAnng08300D PE=4 SV=1	[more]
M4DMK1_BRARP	1.7e-21	70.42	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
V4UH54_9ROSI	2.2e-21	72.22	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026827mg PE=4 SV=1	[more]

BLAST of CmoCh03G006920 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35905.1	1.3e-23	67.61	unknown protein	[more]
AT3G51325.1	2.4e-11	40.79	RING/U-box superfamily protein	[more]
AT3G55530.1	1.6e-07	34.67	RING/U-box superfamily protein	[more]
AT1G15100.1	8.1e-07	43.40	RING-H2 finger A2A	[more]
AT3G16720.1	1.1e-06	45.65	TOXICOS EN LEVADURA 2	[more]

BLAST of CmoCh03G006920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080560\|ref\|XP_008440859.1\|	3.5e-28	85.53	PREDICTED: protein preY, mitochondrial [Cucumis melo]	[more]
gi\|778719790\|ref\|XP_011658060.1\|	3.3e-26	82.67	PREDICTED: protein preY, mitochondrial [Cucumis sativus]	[more]
gi\|223529261\|gb\|EEF31233.1\|	2.0e-23	62.77	Protein preY, mitochondrial precursor, putative [Ricinus communis]	[more]
gi\|1000943050\|ref\|XP_002531148.2\|	2.0e-23	62.77	PREDICTED: UPF0434 protein Pmen_1615 [Ricinus communis]	[more]
gi\|1009144369\|ref\|XP_015889761.1\|	3.8e-22	70.83	PREDICTED: UPF0434 protein GDI0182/Gdia_2252 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G006920.1	CmoCh03G006920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 118..162 score: 9.
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..161 score: 9.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 118..162 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 114..162 score: 9.8
None	No IPR available	GENE3D	G3DSA:2.20.25.10		coord: 23..72 score: 2.6
None	No IPR available	PANTHER	PTHR33505	FAMILY NOT NAMED	coord: 6..80 score: 2.9
None	No IPR available	unknown	SSF158997	Trm112p-like	coord: 17..70 score: 2.62
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 112..167 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G006920	Cucsa.322800	Cucumber (Gy14) v1	cgycmoB0892
CmoCh03G006920	CmaCh03G006660	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G006920	Cla014309	Watermelon (97103) v1	cmowmB623
CmoCh03G006920	Cla008916	Watermelon (97103) v1	cmowmB608
CmoCh03G006920	Csa3G002620	Cucumber (Chinese Long) v2	cmocuB646
CmoCh03G006920	Csa6G507170	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G006920	MELO3C013749	Melon (DHL92) v3.5.1	cmomeB595
CmoCh03G006920	MELO3C007931	Melon (DHL92) v3.5.1	cmomeB605
CmoCh03G006920	ClCG10G000530	Watermelon (Charleston Gray)	cmowcgB569
CmoCh03G006920	ClCG01G020510	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G006920	CSPI03G00570	Wild cucumber (PI 183967)	cmocpiB658
CmoCh03G006920	CSPI06G32040	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G006920	Lsi07G010850	Bottle gourd (USVL1VR-Ls)	cmolsiB605
CmoCh03G006920	Lsi01G005760	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G006920	Cp4.1LG10g00100	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G006920	Cp4.1LG14g10290	Cucurbita pepo (Zucchini)	cmocpeB608
CmoCh03G006920	MELO3C013749.2	Melon (DHL92) v3.6.1	cmomedB682
CmoCh03G006920	MELO3C007931.2	Melon (DHL92) v3.6.1	cmomedB694
CmoCh03G006920	CsaV3_3G000610	Cucumber (Chinese Long) v3	cmocucB0769
CmoCh03G006920	CsaV3_6G047390	Cucumber (Chinese Long) v3	cmocucB0793
CmoCh03G006920	Cla97C01G019960	Watermelon (97103) v2	cmowmbB642
CmoCh03G006920	Cla97C10G185100	Watermelon (97103) v2	cmowmbB645
CmoCh03G006920	Bhi03G000614	Wax gourd	cmowgoB0781
CmoCh03G006920	Bhi11G000252	Wax gourd	cmowgoB0767
CmoCh03G006920	CsGy6G031580	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G006920	CsGy3G000530	Cucumber (Gy14) v2	cgybcmoB380
CmoCh03G006920	Carg00573	Silver-seed gourd	carcmoB0551

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G006920	Cucurbita moschata (Rifu)	cmocmoB417
CmoCh03G006920	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh03G006920	Cucumber (Gy14) v1	cgycmoB0042
CmoCh03G006920	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G006920	Wild cucumber (PI 183967)	cmocpiB656
CmoCh03G006920	Cucumber (Chinese Long) v2	cmocuB644
CmoCh03G006920	Melon (DHL92) v3.5.1	cmomeB578
CmoCh03G006920	Watermelon (Charleston Gray)	cmowcgB601
CmoCh03G006920	Watermelon (97103) v1	cmowmB610
CmoCh03G006920	Cucurbita pepo (Zucchini)	cmocpeB611
CmoCh03G006920	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G006920	Bottle gourd (USVL1VR-Ls)	cmolsiB580
CmoCh03G006920	Bottle gourd (USVL1VR-Ls)	cmolsiB608
CmoCh03G006920	Cucumber (Gy14) v2	cgybcmoB385
CmoCh03G006920	Melon (DHL92) v3.6.1	cmomedB662
CmoCh03G006920	Silver-seed gourd	carcmoB0477
CmoCh03G006920	Silver-seed gourd	carcmoB0886
CmoCh03G006920	Silver-seed gourd	carcmoB1317
CmoCh03G006920	Cucumber (Chinese Long) v3	cmocucB0767
CmoCh03G006920	Cucumber (Chinese Long) v3	cmocucB0773
CmoCh03G006920	Watermelon (97103) v2	cmowmbB673