CmaCh03G006660 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G006660
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RING finger protein 44
Location	Cma_Chr03 : 5563097 .. 5564819 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTACACCTGTGTGTTTATGCTTGGAAGTTTCCACTTTAGAATGATTTGAATGGTCTCATTTCCTGAAAATTTCTGGCGTTGCCCAATAAAATAGTCAGATCAGACTACTTGTCCATCTTTCTTTTGTACTCTTTTCTAGAGTTTGTGGTAGTTAAACAGAATATCAAATTTTTTCTGCTTAAAACTTTTGGGCTTGTGTTGAATTGTCTGAGGGTGAATCGTTTCTTTAGCTTTTACTCACATGGAAGGCATCGTTGGATGTTCATCTCTTTAGTTCTTGGAAAATAAACTTTTGTGTTCCTCTATAAAGTCAACCATGATCTGCTTTACATTGTTCTGTTTGGGTTAGGATGCACGCCAGTTTAGTAAACATCGGGTTGTTCTATGTAAAAAACACGGTGTGTATTGTATGGAACATGCTAAGGACAACGAAATTATTACTTGTTTATAGTTGATTACATGTTCGGTATGAATGTACATGGTTCACCACAGGAAATATTTTTAGTTTATCTTGCATGTTTATCATAATCACAATTATGATGAAGAAAGTGCATTCAATATTCAATAGTAATCAACTCAACGATAATTAATACGTACTCTCTCGGGGTCGGAAGTTCAAATCTTCATGCCCACTTGTTAGCATCCTTAAATGGTTGTTCACTAGTTGTTCCAAAATCTCATAAGCCTTCAATTTGGTCTTATGTTTTTAAGTTGGACACCATTTCTCCAGATATTTTTATCTTTCTTTAGGTCCTATCTTAGGAGCACTTGCATATCCTTTTATGAGGACGCTGGCATATCTCAATCATGTTTCCTTTATGAAATGGTTATCATTTTTATCAAGTTAGCCGATGGGGTATAGCAGCTTGTGTGCTCCTGGCATTTGACACTATAACTTGAAAGGTCAAGTGTAGTAATCTTGTTTAGGTGCAGCCACTTTGTCTTTGAAATTTGAGGGTCTCCTTTCTCAATCTAACTACCATTCCTCAAACAAAATAACCCCCTATTAAAGCACTATAATCAATTATCCTTCTTACCGTTAACTGAATGGAGTGCAGGACGATATTCTCCTCCTGCTATAACTTCATTGTCCTCGGATTGTTTCCAGGTATCAAAGATGCATTATCATGTGGGGGATGTTATTGATTCATATTTTATGAAGAGGGCCAAGGAGGAAGGTTGTGAAACTTCGGCACATCCAACCTTGGATGATGCTGCTATCGAGAGGGAGTGGTGTTCTGTGTGTTTTTCAAACGTAATGGAGAGAAAGGTAGCACAAATTCTTCCTTGCCAGCACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTCCATGAATGCCAGAATCAGAAAACTTGCCCAATTTGTCAATTCTGGGTGCGAGATGAAGATTGTCAACCAACAGAAGTGCTTACGGAGGAGATGGTAATATGGTCCACATCTTTACATGTTATTGATTACTAAACTGAACTGAAAGTTCTCATCTATTTCCTTAGGTACCTAATAACCTTAGAACCTTAGAGAGGGAGACAGAGAGAGTTCATGCAACAAAACAATGGTTTGTGTTACATACGCTAAAATAACTCCATAATGTCCTTTGGTATTGTATAGGTAAAAGGCAAATTGTACTTAGTTTGGTAAGCAATTAAATGTACAGCCCCAATCTTCCTTGTAAATCATATAAACCTTATAAGTTTTTCACAATTGTTTTAGATGTAA

mRNA sequence

ATGGCACTACACCTGATGCACGCCAGTTTAGTAAACATCGGGTTGTTCTATGTAAAAAACACGAGGGCCAAGGAGGAAGGTTGTGAAACTTCGGCACATCCAACCTTGGATGATGCTGCTATCGAGAGGGAGTGGTGTTCTGTGTGTTTTTCAAACGTAATGGAGAGAAAGGTAGCACAAATTCTTCCTTGCCAGCACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTCCATGAATGCCAGAATCAGAAAACTTGCCCAATTTGTCAATTCTGGGTGCGAGATGAAGATTGTCAACCAACAGAAGTGCTTACGGAGGAGATGATGTAA

Coding sequence (CDS)

ATGGCACTACACCTGATGCACGCCAGTTTAGTAAACATCGGGTTGTTCTATGTAAAAAACACGAGGGCCAAGGAGGAAGGTTGTGAAACTTCGGCACATCCAACCTTGGATGATGCTGCTATCGAGAGGGAGTGGTGTTCTGTGTGTTTTTCAAACGTAATGGAGAGAAAGGTAGCACAAATTCTTCCTTGCCAGCACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTCCATGAATGCCAGAATCAGAAAACTTGCCCAATTTGTCAATTCTGGGTGCGAGATGAAGATTGTCAACCAACAGAAGTGCTTACGGAGGAGATGATGTAA

Protein sequence

MALHLMHASLVNIGLFYVKNTRAKEEGCETSAHPTLDDAAIEREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDEDCQPTEVLTEEMM

Homology

[Close]

BLAST of CmaCh03G006660 vs. Swiss-Prot
Match: RNF44_DANRE (RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.7e-08
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 1


Query: 36  LDDAAIEREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQ 91
           L++   E+  C VCFS+   R++ ++LPC HEFH  CV++W    +  +TCPIC+
Sbjct: 386 LENHQSEQTLCVVCFSDFESRQLLRVLPCNHEFHAKCVDKWL---KTNRTCPICR 437

[Close]

BLAST of CmaCh03G006660 vs. Swiss-Prot
Match: RN149_XENLA (E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 1


Query: 41  IEREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQ--------FW 98
           I+ E C+VC  N   + + +ILPC+H FH++C++ W  E    +TCP+C+        FW
Sbjct: 259 IDAENCAVCIENYKTKDLVRILPCKHIFHRLCIDPWLIE---HRTCPMCKLDVIKALGFW 318

[Close]

BLAST of CmaCh03G006660 vs. Swiss-Prot
Match: RNF44_HUMAN (RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 1


Query: 37  DDAAIEREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQ 91
           D    E+  C VCFS+   R++ ++LPC HEFH  CV++W    +  +TCPIC+
Sbjct: 371 DSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWL---KANRTCPICR 421

[Close]

BLAST of CmaCh03G006660 vs. Swiss-Prot
Match: RNF44_MOUSE (RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-07
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 1


Query: 37  DDAAIEREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQ 91
           D    E+  C VCFS+   R++ ++LPC HEFH  CV++W    +  +TCPIC+
Sbjct: 346 DSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWL---KANRTCPICR 396

[Close]

BLAST of CmaCh03G006660 vs. Swiss-Prot
Match: RNF44_RAT (RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-07
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 1


Query: 37  DDAAIEREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQ 91
           D    E+  C VCFS+   R++ ++LPC HEFH  CV++W    +  +TCPIC+
Sbjct: 289 DSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWL---KANRTCPICR 339

[Close]

BLAST of CmaCh03G006660 vs. TrEMBL
Match: W9SMW3_9ROSA (E3 ubiquitin-protein ligase Arkadia OS=Morus notabilis GN=L484_026635 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1


Query: 25  EEGCETSAHPTLDDAAIEREWCSVCFSNVMER-KVAQILPCQHEFHKICVERWFHECQNQ 84
           EEG + SA  +   A  E E+C VC S + E  +   +LPCQH+FHK CVERWF  C  +
Sbjct: 41  EEGLDESAAESSTGA--EGEFCCVCLSTLEEEGEETSLLPCQHKFHKDCVERWFSLC--K 100

Query: 85  KTCPICQFWVRDEDCQPTEVLTEEMM 110
           KTCPIC+F + ++ C   EVLTEEM+
Sbjct: 101 KTCPICRFSMEEDKCYEGEVLTEEMV 122

[Close]

BLAST of CmaCh03G006660 vs. TrEMBL
Match: M5W8Q4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027002mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1


Query: 41  IEREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDEDCQP 100
           +E + C VC S ++E +  + LPC HEFHK+CV++WF  C+   TCP+C+F V     Q 
Sbjct: 41  VEEDVCCVCLSRLVEGEDVRSLPCLHEFHKVCVDKWFDACRT--TCPLCRFPVGGNKSQV 100

Query: 101 TEVLTEEMM 110
            E+LTEEMM
Sbjct: 101 VELLTEEMM 107

[Close]

BLAST of CmaCh03G006660 vs. TrEMBL
Match: F6H5I9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0349g00040 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 37/90 (41.11%), Postives = 57/90 (63.33%), Query Frame = 1


Query: 23  AKEEGCETSAHPTLDDAAIEREWCSVCFSNVMER--KVAQILPCQHEFHKICVERWFHEC 82
           ++E+    SA   L+    E E CS+C S   E   + A++LPC H+FHK C+++WF+ C
Sbjct: 37  SQEKAKGGSAEVKLEGEGDECELCSICLSRYREGIGQGARVLPCMHKFHKACIDKWFNMC 96

Query: 83  QNQKTCPICQFWV-RDEDCQPTEVLTEEMM 110
             +KTCP+C+F +  +E+ Q  E LTEEM+
Sbjct: 97  --RKTCPVCRFSMGAEENFQKREELTEEMV 124

[Close]

BLAST of CmaCh03G006660 vs. TrEMBL
Match: B9SYS7_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0362110 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 37  DDAAIEREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDE 96
           + A  E E+C VC S +   +  ++LPC H FH++C++RWF+ C  +KTCP+C+F +  E
Sbjct: 54  ETAEAEGEFCCVCLSRLKGGENMRVLPCMHRFHRVCIDRWFNVC--RKTCPVCRFAMGQE 113

Query: 97  D--CQPTEVLTEEMM 110
           +   +  E LTEEM+
Sbjct: 114 ERTYKREEQLTEEMV 126

[Close]

BLAST of CmaCh03G006660 vs. TrEMBL
Match: A0A0D2MHL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G007100 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1


Query: 42  EREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDED---C 101
           E E C VC S++ E +  ++LPC HEFH++CV++W + C  +K CPIC+F + +ED    
Sbjct: 64  EGETCCVCLSSMEEGEETRVLPCFHEFHRVCVDKWVNTC--KKNCPICRFSMGEEDRFMF 123

Query: 102 QPTEVLTEEMM 110
              E  TEEMM
Sbjct: 124 HRREAFTEEMM 132

[Close]

BLAST of CmaCh03G006660 vs. TAIR10
Match: AT3G51325.1 (AT3G51325.1 RING/U-box superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-09
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 1


Query: 42  EREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDEDCQPT 101
           E E CSVC   +  + V + LPC HEFH +CV+ WF+    +  CP+C+F        PT
Sbjct: 22  EEECCSVCLMRMEAKDVIKSLPCSHEFHSLCVDTWFN-VSRKICCPLCRF-------SPT 81

Query: 102 EV-LTEEMM 110
            + LT+E++
Sbjct: 82  TILLTDELL 82

[Close]

BLAST of CmaCh03G006660 vs. TAIR10
Match: AT3G55530.1 (AT3G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-08
Identity = 26/75 (34.67%), Postives = 39/75 (52.00%), Query Frame = 1


Query: 23  AKEEGCETSAHPTLDDAAIEREW------CSVCFSNVMERKVAQILPCQHEFHKICVERW 82
           AK+    +SA   LD A   ++       CSVC   V   ++ + LPC H+FH  C++ W
Sbjct: 182 AKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPW 241

Query: 83  FHECQNQKTCPICQF 92
             +   Q TCP+C+F
Sbjct: 242 LRQ---QGTCPVCKF 253

[Close]

BLAST of CmaCh03G006660 vs. TAIR10
Match: AT3G16720.1 (AT3G16720.1 TOXICOS EN LEVADURA 2)

HSP 1 Score: 50.8 bits (120), Expect = 6.0e-07
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 1


Query: 46  CSVCFSNVMERKVAQILP-CQHEFHKICVERWFHECQNQKTCPICQ 91
           C+VC S   E +  ++LP CQH FH  C++ WFH   +  TCP+C+
Sbjct: 119 CAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFH---SHSTCPLCR 161

[Close]

BLAST of CmaCh03G006660 vs. TAIR10
Match: AT1G15100.1 (AT1G15100.1 RING-H2 finger A2A)

HSP 1 Score: 50.8 bits (120), Expect = 6.0e-07
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 46  CSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDEDC 99
           C VC S + E +  + L C+H FHK C+E W H  Q   TCP+C+  +  +DC
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLH--QFNFTCPLCRSALVSDDC 136

[Close]

BLAST of CmaCh03G006660 vs. TAIR10
Match: AT2G47560.1 (AT2G47560.1 RING/U-box superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1


Query: 42  EREWCSVCFSNVMERKVAQILP-CQHEFHKICVERWFHECQNQKTCPICQ 91
           E+E CSVC S   E    ++LP C H FH  C++ WF   +++ TCP+C+
Sbjct: 104 EKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWF---RSRSTCPLCR 150

[Close]

BLAST of CmaCh03G006660 vs. NCBI nr
Match: gi|703163328|ref|XP_010113305.1| (E3 ubiquitin-protein ligase Arkadia [Morus notabilis])

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-13
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1


Query: 25  EEGCETSAHPTLDDAAIEREWCSVCFSNVMER-KVAQILPCQHEFHKICVERWFHECQNQ 84
           EEG + SA  +   A  E E+C VC S + E  +   +LPCQH+FHK CVERWF  C  +
Sbjct: 41  EEGLDESAAESSTGA--EGEFCCVCLSTLEEEGEETSLLPCQHKFHKDCVERWFSLC--K 100

Query: 85  KTCPICQFWVRDEDCQPTEVLTEEMM 110
           KTCPIC+F + ++ C   EVLTEEM+
Sbjct: 101 KTCPICRFSMEEDKCYEGEVLTEEMV 122

[Close]

BLAST of CmaCh03G006660 vs. NCBI nr
Match: gi|595819001|ref|XP_007204439.1| (hypothetical protein PRUPE_ppa027002mg [Prunus persica])

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1


Query: 41  IEREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDEDCQP 100
           +E + C VC S ++E +  + LPC HEFHK+CV++WF  C+   TCP+C+F V     Q 
Sbjct: 41  VEEDVCCVCLSRLVEGEDVRSLPCLHEFHKVCVDKWFDACRT--TCPLCRFPVGGNKSQV 100

Query: 101 TEVLTEEMM 110
            E+LTEEMM
Sbjct: 101 VELLTEEMM 107

[Close]

BLAST of CmaCh03G006660 vs. NCBI nr
Match: gi|255580647|ref|XP_002531146.1| (PREDICTED: E3 ubiquitin-protein ligase RHA2A [Ricinus communis])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 37  DDAAIEREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDE 96
           + A  E E+C VC S +   +  ++LPC H FH++C++RWF+ C  +KTCP+C+F +  E
Sbjct: 54  ETAEAEGEFCCVCLSRLKGGENMRVLPCMHRFHRVCIDRWFNVC--RKTCPVCRFAMGQE 113

Query: 97  D--CQPTEVLTEEMM 110
           +   +  E LTEEM+
Sbjct: 114 ERTYKREEQLTEEMV 126

[Close]

BLAST of CmaCh03G006660 vs. NCBI nr
Match: gi|823138905|ref|XP_012469292.1| (PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Gossypium raimondii])

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1


Query: 42  EREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDED---C 101
           E E C VC S++ E +  ++LPC HEFH++CV++W + C  +K CPIC+F + +ED    
Sbjct: 64  EGETCCVCLSSMEEGEETRVLPCFHEFHRVCVDKWVNTC--KKNCPICRFSMGEEDRFMF 123

Query: 102 QPTEVLTEEMM 110
              E  TEEMM
Sbjct: 124 HRREAFTEEMM 132

[Close]

BLAST of CmaCh03G006660 vs. NCBI nr
Match: gi|661894859|emb|CDP01858.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 41  IEREWCSVCFSNVMERKVAQILPCQHEFHKICVERWFHECQNQKTCPICQFWVRDEDCQP 100
           +E+  C +C S + E +  ++LPC HEFH+ CV++W +   ++KTCP+C+F + DE   P
Sbjct: 64  VEKICCVICLSRLKEGEEKRLLPCHHEFHRECVDKWLN--TSRKTCPVCRFLMEDEQRNP 123

Query: 101 --TEVLTEEMM 110
              E LTEEM+
Sbjct: 124 QKREFLTEEMV 132

The following BLAST results are available for this feature:

BLAST of CmaCh03G006660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNF44_DANRE	6.7e-08	41.82	RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1	[more]
RN149_XENLA	1.5e-07	36.92	E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2 SV=1	[more]
RNF44_HUMAN	2.6e-07	42.59	RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1	[more]
RNF44_MOUSE	3.3e-07	42.59	RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1	[more]
RNF44_RAT	3.3e-07	42.59	RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1	[more]

BLAST of CmaCh03G006660 vs. TrEMBL


Match Name	E-value	Identity	Description
W9SMW3_9ROSA	1.7e-13	50.00	E3 ubiquitin-protein ligase Arkadia OS=Morus notabilis GN=L484_026635 PE=4 SV=1	[more]
M5W8Q4_PRUPE	1.6e-11	47.83	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027002mg PE=4 SV=1	[more]
F6H5I9_VITVI	2.2e-10	41.11	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0349g00040 PE=4 SV=...	[more]
B9SYS7_RICCO	1.5e-09	41.33	Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0362110 PE=4 ...	[more]
A0A0D2MHL6_GOSRA	1.9e-09	45.07	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G007100 PE=4 SV=1	[more]

BLAST of CmaCh03G006660 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51325.1	6.5e-09	39.13	RING/U-box superfamily protein	[more]
AT3G55530.1	4.2e-08	34.67	RING/U-box superfamily protein	[more]
AT3G16720.1	6.0e-07	43.48	TOXICOS EN LEVADURA 2	[more]
AT1G15100.1	6.0e-07	41.51	RING-H2 finger A2A	[more]
AT2G47560.1	1.8e-06	42.00	RING/U-box superfamily protein	[more]

BLAST of CmaCh03G006660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703163328\|ref\|XP_010113305.1\|	2.4e-13	50.00	E3 ubiquitin-protein ligase Arkadia [Morus notabilis]	[more]
gi\|595819001\|ref\|XP_007204439.1\|	2.2e-11	47.83	hypothetical protein PRUPE_ppa027002mg [Prunus persica]	[more]
gi\|255580647\|ref\|XP_002531146.1\|	2.1e-09	41.33	PREDICTED: E3 ubiquitin-protein ligase RHA2A [Ricinus communis]	[more]
gi\|823138905\|ref\|XP_012469292.1\|	2.7e-09	45.07	PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Gossypium raimondii]	[more]
gi\|661894859\|emb\|CDP01858.1\|	3.6e-09	42.25	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006660.1	CmaCh03G006660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 46..90 score: 1.
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 46..89 score: 5.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 46..90 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 42..90 score: 1.3
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 39..94 score: 1.41

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G006660	Cucsa.322800	Cucumber (Gy14) v1	cgycmaB0896
CmaCh03G006660	Cla014310	Watermelon (97103) v1	cmawmB632
CmaCh03G006660	Cla008916	Watermelon (97103) v1	cmawmB616
CmaCh03G006660	Csa3G002620	Cucumber (Chinese Long) v2	cmacuB658
CmaCh03G006660	MELO3C013749	Melon (DHL92) v3.5.1	cmameB606
CmaCh03G006660	ClCG10G000530	Watermelon (Charleston Gray)	cmawcgB571
CmaCh03G006660	CSPI03G00570	Wild cucumber (PI 183967)	cmacpiB666
CmaCh03G006660	CmoCh03G006920	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G006660	Lsi01G005760	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G006660	Lsi07G010850	Bottle gourd (USVL1VR-Ls)	cmalsiB617
CmaCh03G006660	MELO3C013749.2	Melon (DHL92) v3.6.1	cmamedB690
CmaCh03G006660	CsaV3_3G000610	Cucumber (Chinese Long) v3	cmacucB0786
CmaCh03G006660	Cla97C01G019970	Watermelon (97103) v2	cmawmbB670
CmaCh03G006660	Cla97C10G185100	Watermelon (97103) v2	cmawmbB673
CmaCh03G006660	Bhi03G000614	Wax gourd	cmawgoB0788
CmaCh03G006660	Bhi11G000252	Wax gourd	cmawgoB0773
CmaCh03G006660	CsGy3G000530	Cucumber (Gy14) v2	cgybcmaB405

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G006660	Cucumber (Gy14) v2	cgybcmaB408
CmaCh03G006660	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G006660	Melon (DHL92) v3.6.1	cmamedB672
CmaCh03G006660	Melon (DHL92) v3.6.1	cmamedB685
CmaCh03G006660	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G006660	Silver-seed gourd	carcmaB0491
CmaCh03G006660	Silver-seed gourd	carcmaB0567
CmaCh03G006660	Silver-seed gourd	carcmaB0912
CmaCh03G006660	Silver-seed gourd	carcmaB1355
CmaCh03G006660	Cucumber (Chinese Long) v3	cmacucB0784
CmaCh03G006660	Cucumber (Chinese Long) v3	cmacucB0790
CmaCh03G006660	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G006660	Watermelon (97103) v2	cmawmbB700
CmaCh03G006660	Cucurbita maxima (Rimu)	cmacmaB185
CmaCh03G006660	Cucurbita maxima (Rimu)	cmacmaB422
CmaCh03G006660	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh03G006660	Cucumber (Gy14) v1	cgycmaB0047
CmaCh03G006660	Cucumber (Gy14) v1	cgycmaB0937
CmaCh03G006660	Cucurbita moschata (Rifu)	cmacmoB633
CmaCh03G006660	Cucurbita moschata (Rifu)	cmacmoB647
CmaCh03G006660	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G006660	Wild cucumber (PI 183967)	cmacpiB664
CmaCh03G006660	Wild cucumber (PI 183967)	cmacpiB669
CmaCh03G006660	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G006660	Cucumber (Chinese Long) v2	cmacuB661
CmaCh03G006660	Cucumber (Chinese Long) v2	cmacuB656
CmaCh03G006660	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G006660	Melon (DHL92) v3.5.1	cmameB589
CmaCh03G006660	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G006660	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G006660	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G006660	Cucurbita pepo (Zucchini)	cmacpeB661
CmaCh03G006660	Cucurbita pepo (Zucchini)	cmacpeB678
CmaCh03G006660	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G006660	Bottle gourd (USVL1VR-Ls)	cmalsiB596
CmaCh03G006660	Bottle gourd (USVL1VR-Ls)	cmalsiB619
CmaCh03G006660	Bottle gourd (USVL1VR-Ls)	cmalsiB615