Csa3G002620 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G002620
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRING finger protein; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
LocationChr3 : 395038 .. 395512 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAGCTAATGACTTCCAAATCTCTTCATTGATGACAAATAATGATTTTCAACAAGGTCTTCTTCTTCTTCTACAACAACCTCATTGGCTTCCGGAGCCGGCCAAGATTCAAGCAAGCAACCCCGCTTCCCCGCAGTGGCAATTCGAGCCTTCGACCTTTGCCAACTGATGATTGTACTATCTTAGCTCTTTCGAGTCTCGAGAAGGCGTTGGAGGGCGAGACATGTTGCGTGTGCTTGTCAAGTATGGGAAACACAGACAGGGATGGAGATAAGGGTGTTGGCACAAGTGTTCTTCCTTGTTTGCATGAGTTTCATAAGGTATGCGTCGAACGATGGTTCGAAGAGTGTCGTAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGGTAGTCATGAAGATGAGACTAATCAAATACTCACTGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTTTGA

mRNA sequence

ATGATTTTCAACAAGGTCTTCTTCTTCTTCTACAACAACCTCATTGGCTTCCGGAGCCGGCCAAGATTCAAGCAAGCAACCCCGCTTCCCCGCAGTGGCAATTCGAGCCTTCGACCTTTGCCAACTGATGATTGTACTATCTTAGCTCTTTCGAGTCTCGAGAAGGCGTTGGAGGGCGAGACATGTTGCGTGTGCTTGTCAAGTATGGGAAACACAGACAGGGATGGAGATAAGGGTGTTGGCACAAGTGTTCTTCCTTGTTTGCATGAGTTTCATAAGGTATGCGTCGAACGATGGTTCGAAGAGTGTCGTAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGGTAGTCATGAAGATGAGACTAATCAAATACTCACTGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTTTGA

Coding sequence (CDS)

ATGATTTTCAACAAGGTCTTCTTCTTCTTCTACAACAACCTCATTGGCTTCCGGAGCCGGCCAAGATTCAAGCAAGCAACCCCGCTTCCCCGCAGTGGCAATTCGAGCCTTCGACCTTTGCCAACTGATGATTGTACTATCTTAGCTCTTTCGAGTCTCGAGAAGGCGTTGGAGGGCGAGACATGTTGCGTGTGCTTGTCAAGTATGGGAAACACAGACAGGGATGGAGATAAGGGTGTTGGCACAAGTGTTCTTCCTTGTTTGCATGAGTTTCATAAGGTATGCGTCGAACGATGGTTCGAAGAGTGTCGTAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGGTAGTCATGAAGATGAGACTAATCAAATACTCACTGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTTTGA

Protein sequence

MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQILTDEMVIWFSSFHTSGF*
Homology
[Close]
BLAST of Csa3G002620 vs. Swiss-Prot
Match: RN167_MOUSE (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-08
Identity = 32/101 (31.68%), Postives = 44/101 (43.56%), Query Frame = 1 

Query: 31  RSGNSSLRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHE 90
           R     L+ +PT D         +K  E + C +CL        DGDK     VLPC H 
Sbjct: 207 RLTKEQLKQIPTHD--------YQKGDEYDVCAICLDEY----EDGDK---LRVLPCAHA 266

Query: 91  FHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQILTDE 132
           +H  CV+ W  + R+TCPIC+  +  G   E++  +    E
Sbjct: 267 YHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEETQEQE 292

[Close]
BLAST of Csa3G002620 vs. Swiss-Prot
Match: RN167_HUMAN (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-08
Identity = 31/96 (32.29%), Postives = 43/96 (44.79%), Query Frame = 1 

Query: 31  RSGNSSLRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHE 90
           R     L+ +PT D         +K  + + C +CL        DGDK     VLPC H 
Sbjct: 207 RLTKEQLKQIPTHD--------YQKGDQYDVCAICLDEY----EDGDK---LRVLPCAHA 266

Query: 91  FHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQ 127
           +H  CV+ W  + R+TCPIC+  +  G   ED+  +
Sbjct: 267 YHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEE 287

[Close]
BLAST of Csa3G002620 vs. Swiss-Prot
Match: RN167_RAT (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08
Identity = 30/96 (31.25%), Postives = 43/96 (44.79%), Query Frame = 1 

Query: 31  RSGNSSLRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHE 90
           R     L+ +PT D         +K  E + C +CL        DGDK     +LPC H 
Sbjct: 207 RLTKEQLKQIPTHD--------YQKGDEYDVCAICLDEY----EDGDK---LRILPCAHA 266

Query: 91  FHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQ 127
           +H  CV+ W  + R+TCPIC+  +  G   E++  +
Sbjct: 267 YHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEE 287

[Close]
BLAST of Csa3G002620 vs. Swiss-Prot
Match: RNF13_CHICK (E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 27/90 (30.00%), Postives = 42/90 (46.67%), Query Frame = 1 

Query: 40  LPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERW 99
           L  D    L +   +K  E + C +CL        DGDK     +LPC H +H  CV+ W
Sbjct: 218 LRKDQLKKLPVHKFKKGDEYDVCAICLDEY----EDGDK---LRILPCSHAYHCKCVDPW 277

Query: 100 FEECRRTCPICRYSM---EGGGSHEDETNQ 127
             + ++TCP+C+  +   +G    E +++Q
Sbjct: 278 LTKTKKTCPVCKQKVVPSQGDSDSETDSSQ 300

[Close]
BLAST of Csa3G002620 vs. Swiss-Prot
Match: SDIR1_ARATH (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 30/105 (28.57%), Postives = 45/105 (42.86%), Query Frame = 1 

Query: 30  PRSGNSSLRPLPTDDCTILALSSLEKALEGE----TCCVCLSSMGNTDRDGDKGVGTSVL 89
           P +G S  +   T       L S  ++ +G     TC VCL  +         G     L
Sbjct: 175 PENGCSLAKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQV-------TVGEIVRTL 234

Query: 90  PCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQILTD 131
           PCLH+FH  C++ W  + + TCP+C++    G   +DE +   +D
Sbjct: 235 PCLHQFHAGCIDPWLRQ-QGTCPVCKFRAHSGWQEQDEIDDDASD 271

[Close]
BLAST of Csa3G002620 vs. TrEMBL
Match: A0A0A0L4W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002620 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-81
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60
           MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE
Sbjct: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60

Query: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120
           TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH
Sbjct: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120

Query: 121 EDETNQILTDEMVIWFSSFHTSGF 145
           EDETNQILTDEMVIWFSSFHTSGF
Sbjct: 121 EDETNQILTDEMVIWFSSFHTSGF 144

[Close]
BLAST of Csa3G002620 vs. TrEMBL
Match: A0A0D2MHL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G007100 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-22
Identity = 62/151 (41.06%), Postives = 84/151 (55.63%), Query Frame = 1 

Query: 1   MIFNKVFFFFYNNLIGFRSR-----PRFKQATPLPRSGNSSLRPLPTDDCTILALSS--L 60
           MI NK+  F Y  ++G R        R K+A P P +    +  +        + SS  L
Sbjct: 1   MILNKLVTFIYT-IVGVRRSVSDEGKRTKEAAPPPPAAAGYVVVMEGTAMGSNSSSSSYL 60

Query: 61  EKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYS 120
           + + EGETCCVCLSSM       ++G  T VLPC HEFH+VCV++W   C++ CPICR+S
Sbjct: 61  QGSTEGETCCVCLSSM-------EEGEETRVLPCFHEFHRVCVDKWVNTCKKNCPICRFS 120

Query: 121 MEGGGSHEDETNQILTDEMVIWFSSFHTSGF 145
           M           +  T+EM+IWFSSFH +GF
Sbjct: 121 MGEEDRFMFHRREAFTEEMMIWFSSFHIAGF 143

[Close]
BLAST of Csa3G002620 vs. TrEMBL
Match: W9SMW3_9ROSA (E3 ubiquitin-protein ligase Arkadia OS=Morus notabilis GN=L484_026635 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-22
Identity = 62/144 (43.06%), Postives = 84/144 (58.33%), Query Frame = 1 

Query: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60
           M+ NK F     N I  + +PR K+A P           L  ++    + +      EGE
Sbjct: 1   MVLNK-FLSVICNFISLKGQPRLKEA-PASWEVIEPNVELKLEEGLDESAAESSTGAEGE 60

Query: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120
            CCVCLS++       ++G  TS+LPC H+FHK CVERWF  C++TCPICR+SME    +
Sbjct: 61  FCCVCLSTLE------EEGEETSLLPCQHKFHKDCVERWFSLCKKTCPICRFSMEEDKCY 120

Query: 121 EDETNQILTDEMVIWFSSFHTSGF 145
           E E   +LT+EMVI+FSSFH +GF
Sbjct: 121 EGE---VLTEEMVIYFSSFHAAGF 133

[Close]
BLAST of Csa3G002620 vs. TrEMBL
Match: A0A061DGH2_THECC (Nucleic acid binding protein, putative OS=Theobroma cacao GN=TCM_000153 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-22
Identity = 60/145 (41.38%), Postives = 81/145 (55.86%), Query Frame = 1 

Query: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSL-RPLPTDDCTILALSSLEKALEG 60
           M+ +K+  F YN LIG R   R K+A          + + +        A     +A EG
Sbjct: 1   MVLSKLVAFIYN-LIGVRVHARIKEAAAAYAVIKPDISKKVKEGQSNFQARPCAGEASEG 60

Query: 61  ETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGS 120
           E CCVCLS M    ++GD      VLPCLH+FH+VCV+RW + CR+ CP+CR+SM  G  
Sbjct: 61  EICCVCLSGM----KEGDD---MRVLPCLHQFHRVCVDRWLDGCRKNCPVCRFSM--GEE 120

Query: 121 HEDETNQILTDEMVIWFSSFHTSGF 145
                 +  T+EM+IWFSSFH +GF
Sbjct: 121 ERFHRREAFTEEMLIWFSSFHVAGF 135

[Close]
BLAST of Csa3G002620 vs. TrEMBL
Match: U5GF03_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11150g PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.4e-21
Identity = 67/149 (44.97%), Postives = 78/149 (52.35%), Query Frame = 1 

Query: 5   KVFFFFYNNLIGFRSRPRFKQATPLPR--------SGNSSLRPLPTDDCTILALSSLEKA 64
           K F  F  + IG R  PR K A             SGN     L   +  + + SS    
Sbjct: 4   KKFVSFVYSFIGLRWHPRIKDAAAAAACRRITVDVSGNVKQGVL---ESPVGSSSSEIIE 63

Query: 65  LEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEE-CRRTCPICRYSME 124
            EGE CCVCLS +   D D      TS LPCLH FHKVC+E WF   CRRTCP+CR SM 
Sbjct: 64  AEGEYCCVCLSRL-KADED------TSALPCLHRFHKVCIEGWFNNVCRRTCPLCRSSM- 123

Query: 125 GGGSHEDETNQILTDEMVIWFSSFHTSGF 145
           GG     +  +  T+EMVIWFSSFH +GF
Sbjct: 124 GGEERSHKREEQFTEEMVIWFSSFHVAGF 141

[Close]
BLAST of Csa3G002620 vs. TAIR10
Match: AT3G51325.1 (AT3G51325.1 RING/U-box superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.7e-12
Identity = 36/84 (42.86%), Postives = 43/84 (51.19%), Query Frame = 1 

Query: 58  EGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTC-PICRYSMEG 117
           E E C VCL  M   D           LPC HEFH +CV+ WF   R+ C P+CR+S   
Sbjct: 22  EEECCSVCLMRMEAKDV-------IKSLPCSHEFHSLCVDTWFNVSRKICCPLCRFS--- 81

Query: 118 GGSHEDETNQILTDEMVIWFSSFH 141
                  T  +LTDE+++WFSSFH
Sbjct: 82  ------PTTILLTDELLLWFSSFH 89

[Close]
BLAST of Csa3G002620 vs. TAIR10
Match: AT3G55530.1 (AT3G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 9.5e-08
Identity = 30/105 (28.57%), Postives = 45/105 (42.86%), Query Frame = 1 

Query: 30  PRSGNSSLRPLPTDDCTILALSSLEKALEGE----TCCVCLSSMGNTDRDGDKGVGTSVL 89
           P +G S  +   T       L S  ++ +G     TC VCL  +         G     L
Sbjct: 175 PENGCSLAKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQV-------TVGEIVRTL 234

Query: 90  PCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQILTD 131
           PCLH+FH  C++ W  + + TCP+C++    G   +DE +   +D
Sbjct: 235 PCLHQFHAGCIDPWLRQ-QGTCPVCKFRAHSGWQEQDEIDDDASD 271

[Close]
BLAST of Csa3G002620 vs. TAIR10
Match: AT4G32600.1 (AT4G32600.1 RING/U-box superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 30/79 (37.97%), Postives = 42/79 (53.16%), Query Frame = 1 

Query: 54  EKALEGE--TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICR 113
           E+A+ GE   CC+CL+   N +   +       LPC H FHK CV++W  +   +CP+C+
Sbjct: 353 ERAISGEDAVCCICLAKYANNEELRE-------LPCSHFFHKECVDKWL-KINASCPLCK 412

Query: 114 YSMEGGGSHEDETNQ-ILT 130
              E G  + D T+Q ILT
Sbjct: 413 --SEVGEKNSDLTSQGILT 421

[Close]
BLAST of Csa3G002620 vs. TAIR10
Match: AT1G35625.1 (AT1G35625.1 RING/U-box superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 25/81 (30.86%), Postives = 37/81 (45.68%), Query Frame = 1 

Query: 37  LRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCV 96
           L+ +PT+  T      LE+     TC +C+        D   G    +LPC H++H VC+
Sbjct: 95  LQSMPTEVYT----GVLEEGSTSVTCAICID-------DYRVGEILRILPCKHKYHAVCI 154

Query: 97  ERWFEECRRTCPICRYSMEGG 118
           + W   CR  CP+C+ +   G
Sbjct: 155 DSWLGRCRSFCPVCKQNPRTG 164

[Close]
BLAST of Csa3G002620 vs. TAIR10
Match: AT1G35630.1 (AT1G35630.1 Protease-associated (PA) RING/U-box zinc finger family protein)

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07
Identity = 21/65 (32.31%), Postives = 31/65 (47.69%), Query Frame = 1 

Query: 53  LEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRY 112
           LE++    TC +C+        D   G    +LPC H++H VC++ W   CR  CP+C+ 
Sbjct: 224 LEESSTSVTCAICID-------DYCVGEKLRILPCKHKYHAVCIDSWLGRCRSFCPVCKQ 281

Query: 113 SMEGG 118
           +   G
Sbjct: 284 NPRTG 281

[Close]
BLAST of Csa3G002620 vs. NCBI nr
Match: gi|449456937|ref|XP_004146205.1| (PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 2.7e-81
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60
           MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE
Sbjct: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60

Query: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120
           TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH
Sbjct: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120

Query: 121 EDETNQILTDEMVIWFSSFHTSGF 145
           EDETNQILTDEMVIWFSSFHTSGF
Sbjct: 121 EDETNQILTDEMVIWFSSFHTSGF 144

[Close]
BLAST of Csa3G002620 vs. NCBI nr
Match: gi|659095326|ref|XP_008448522.1| (PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 5 [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 5.5e-74
Identity = 137/149 (91.95%), Postives = 140/149 (93.96%), Query Frame = 1 

Query: 1   MIFNKVFFFFYNNLIGFRSRP-RFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEG 60
           M+FNKVFFFFYNN IGFRSRP RFKQATPLP  GNSSLRP+PTDDCTI+ALSSLEKALEG
Sbjct: 1   MVFNKVFFFFYNNFIGFRSRPTRFKQATPLPHGGNSSLRPMPTDDCTIIALSSLEKALEG 60

Query: 61  ETCCVCLSSMGNTDRDGDKGV--GTSVLPCLHEFHKVCVERWFEECRRTCPICRYSME-- 120
           ETCCVCLSSMGNTD DGDKGV  GTSVLPCLHEFHKVCVERWFEECRRTCPICRYSME  
Sbjct: 61  ETCCVCLSSMGNTDGDGDKGVGNGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGG 120

Query: 121 GGGSHEDETNQILTDEMVIWFSSFHTSGF 145
           GGGSHEDETNQILTDEMVIWFSSFHTSGF
Sbjct: 121 GGGSHEDETNQILTDEMVIWFSSFHTSGF 149

[Close]
BLAST of Csa3G002620 vs. NCBI nr
Match: gi|702482475|ref|XP_010033525.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 [Eucalyptus grandis])

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 1 

Query: 51  SSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPIC 110
           SS  +   GE CCVCLS +       D G    VLPC+HEFHK CV+RWF+ CRRTCPIC
Sbjct: 51  SSSGEPFGGEVCCVCLSGLKE-----DAGGDVRVLPCMHEFHKACVDRWFDACRRTCPIC 110

Query: 111 RYSM-EGGGSHEDETNQILTDEMVIWFSSFHTSGF 145
           R+SM E GG       + LT+EMVIWFSSFH +GF
Sbjct: 111 RFSMDEAGGDEGCRGEEELTEEMVIWFSSFHAAGF 140

[Close]
BLAST of Csa3G002620 vs. NCBI nr
Match: gi|703163328|ref|XP_010113305.1| (E3 ubiquitin-protein ligase Arkadia [Morus notabilis])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 62/144 (43.06%), Postives = 84/144 (58.33%), Query Frame = 1 

Query: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60
           M+ NK F     N I  + +PR K+A P           L  ++    + +      EGE
Sbjct: 1   MVLNK-FLSVICNFISLKGQPRLKEA-PASWEVIEPNVELKLEEGLDESAAESSTGAEGE 60

Query: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120
            CCVCLS++       ++G  TS+LPC H+FHK CVERWF  C++TCPICR+SME    +
Sbjct: 61  FCCVCLSTLE------EEGEETSLLPCQHKFHKDCVERWFSLCKKTCPICRFSMEEDKCY 120

Query: 121 EDETNQILTDEMVIWFSSFHTSGF 145
           E E   +LT+EMVI+FSSFH +GF
Sbjct: 121 EGE---VLTEEMVIYFSSFHAAGF 133

[Close]
BLAST of Csa3G002620 vs. NCBI nr
Match: gi|823138905|ref|XP_012469292.1| (PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Gossypium raimondii])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 62/151 (41.06%), Postives = 84/151 (55.63%), Query Frame = 1 

Query: 1   MIFNKVFFFFYNNLIGFRSR-----PRFKQATPLPRSGNSSLRPLPTDDCTILALSS--L 60
           MI NK+  F Y  ++G R        R K+A P P +    +  +        + SS  L
Sbjct: 1   MILNKLVTFIYT-IVGVRRSVSDEGKRTKEAAPPPPAAAGYVVVMEGTAMGSNSSSSSYL 60

Query: 61  EKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYS 120
           + + EGETCCVCLSSM       ++G  T VLPC HEFH+VCV++W   C++ CPICR+S
Sbjct: 61  QGSTEGETCCVCLSSM-------EEGEETRVLPCFHEFHRVCVDKWVNTCKKNCPICRFS 120

Query: 121 MEGGGSHEDETNQILTDEMVIWFSSFHTSGF 145
           M           +  T+EM+IWFSSFH +GF
Sbjct: 121 MGEEDRFMFHRREAFTEEMMIWFSSFHIAGF 143

The following BLAST results are available for this feature:
BLAST of Csa3G002620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RN167_MOUSE2.4e-0831.68E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1[more]
RN167_HUMAN2.4e-0832.29E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1 SV=1[more]
RN167_RAT4.0e-0831.25E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1[more]
RNF13_CHICK1.7e-0630.00E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1 SV=1[more]
SDIR1_ARATH1.7e-0628.57E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1[more]
BLAST of Csa3G002620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4W7_CUCSA1.9e-81100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002620 PE=4 SV=1[more]
A0A0D2MHL6_GOSRA7.6e-2241.06Uncharacterized protein OS=Gossypium raimondii GN=B456_003G007100 PE=4 SV=1[more]
W9SMW3_9ROSA7.6e-2243.06E3 ubiquitin-protein ligase Arkadia OS=Morus notabilis GN=L484_026635 PE=4 SV=1[more]
A0A061DGH2_THECC7.6e-2241.38Nucleic acid binding protein, putative OS=Theobroma cacao GN=TCM_000153 PE=4 SV=... [more]
U5GF03_POPTR6.4e-2144.97Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11150g PE=4 SV=1[more]
BLAST of Csa3G002620 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G51325.13.7e-1242.86 RING/U-box superfamily protein[more]
AT3G55530.19.5e-0828.57 RING/U-box superfamily protein[more]
AT4G32600.12.8e-0737.97 RING/U-box superfamily protein[more]
AT1G35625.12.8e-0730.86 RING/U-box superfamily protein[more]
AT1G35630.13.6e-0732.31 Protease-associated (PA) RING/U-box zinc finger family protein[more]
BLAST of Csa3G002620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449456937|ref|XP_004146205.1|2.7e-81100.00PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Cucumis sativus][more]
gi|659095326|ref|XP_008448522.1|5.5e-7491.95PREDICTED: receptor homology region, transmembrane domain- and RING domain-conta... [more]
gi|702482475|ref|XP_010033525.1|1.3e-2256.84PREDICTED: E3 ubiquitin-protein ligase RNF13 [Eucalyptus grandis][more]
gi|703163328|ref|XP_010113305.1|1.1e-2143.06E3 ubiquitin-protein ligase Arkadia [Morus notabilis][more]
gi|823138905|ref|XP_012469292.1|1.1e-2141.06PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G002620.1Csa3G002620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 61..111
score: 7.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 62..110
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 62..111
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 53..115
score: 1.3
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 54..114
score: 9.28

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G002620Cla014310Watermelon (97103) v1cuwmB261
Csa3G002620Cla008916Watermelon (97103) v1cuwmB200
Csa3G002620MELO3C013749Melon (DHL92) v3.5.1cumeB243
Csa3G002620ClCG10G000530Watermelon (Charleston Gray)cuwcgB189
Csa3G002620Lsi01G005760Bottle gourd (USVL1VR-Ls)culsiB165
Csa3G002620Lsi07G010850Bottle gourd (USVL1VR-Ls)culsiB228
Csa3G002620MELO3C013749.2Melon (DHL92) v3.6.1cumedB224
Csa3G002620Cla97C10G185100Watermelon (97103) v2cuwmbB181
Csa3G002620Cla97C01G019970Watermelon (97103) v2cuwmbB178
Csa3G002620Bhi11G000252Wax gourdcuwgoB226
Csa3G002620Bhi03G000614Wax gourdcuwgoB326
Csa3G002620CSPI03G00570Wild cucumber (PI 183967)cpicuB120
Csa3G002620Cucsa.322800Cucumber (Gy14) v1cgycuB458
Csa3G002620CmaCh03G006660Cucurbita maxima (Rimu)cmacuB658
Csa3G002620CmoCh03G006920Cucurbita moschata (Rifu)cmocuB646
Csa3G002620CmoCh16G012980Cucurbita moschata (Rifu)cmocuB316
Csa3G002620Cp4.1LG14g10290Cucurbita pepo (Zucchini)cpecuB212
Csa3G002620CsGy3G000530Cucumber (Gy14) v2cgybcuB109
Csa3G002620Carg19461Silver-seed gourdcarcuB0462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G002620Melon (DHL92) v3.5.1cumeB262
Csa3G002620Watermelon (Charleston Gray)cuwcgB209
Csa3G002620Cucurbita pepo (Zucchini)cpecuB069
Csa3G002620Cucurbita pepo (Zucchini)cpecuB484
Csa3G002620Cucurbita pepo (Zucchini)cpecuB555
Csa3G002620Cucurbita pepo (Zucchini)cpecuB851
Csa3G002620Cucumber (Gy14) v2cgybcuB266
Csa3G002620Melon (DHL92) v3.6.1cumedB252
Csa3G002620Silver-seed gourdcarcuB0173
Csa3G002620Silver-seed gourdcarcuB0436
Csa3G002620Silver-seed gourdcarcuB0662
Csa3G002620Cucumber (Chinese Long) v2cucuB119
Csa3G002620Cucumber (Gy14) v1cgycuB024
Csa3G002620Cucurbita maxima (Rimu)cmacuB326
Csa3G002620Cucurbita maxima (Rimu)cmacuB827
Csa3G002620Cucurbita maxima (Rimu)cmacuB854
Csa3G002620Cucurbita moschata (Rifu)cmocuB817
Csa3G002620Cucurbita moschata (Rifu)cmocuB842