CSPI03G00570 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G00570
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	E3 ubiquitin-protein ligase Arkadia
Location	Chr3 : 413746 .. 414640 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTAACTCTCTTGTTTAGGTAGCAACCGCTTTGTGTATGACTCATTACTATCCTTCTTCTTCACCAATCCAACCACTTCTAACCCACGCAAGAATTGCTCTCTTTTTCTCCTCTAATCTCATCTTCCTTTTCATTAAAAAAAAAAAAAAAACATCTCTAGCTAGCTAATGACTTCCAAATCTCTTCATTGATGACAAATAATGATTTTCAACAAGGTCTTCTTCTTCTTCTACAACAACCTCATTGGCTTCCGGAGCCGGCCAAGATTCAAGCAAGCAACCCCGCTTCCCCGCAGTGGCAATTCGAGCCTTCGACCTTTGCCAACTGATGATTGTACTATCTTAGCTCTTTCGAGCCTCGAGAAGGCGTTGGAGGGCGAGACATGTTGCGTGTGCTTGTCAAGTATGGGAAACACAGACAGGGATGGAGATAAGGGTGTTGGCACAAGTGTTCTTCCTTGTTTGCATGAGTTTCATAAGGTATGCGTGGAACGGTGGTTCGAAGAGTGTCGTAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGGTAGTCATGAAGATGAGACTAATCAAATACTCACTGATGAGATGGTGATATGGTTTTCTTCTTTTCATACCTCTGGTTTTTGAGCTGTTTTGATTTGTTAGTTACATCTACTAAAAGCTTTCAAGCTTTTGCAAAAGTGCTTCCTTTGTACAAGGTTAAATCTTCATGATTTTGATTAATGTCATTTGGATGGCTCTAGCTTCACAATATCACTGTTGAGAATATCTTTTTTTCCGTTTAAAAATAAAGTTAGTCTGTAGAAAAGAAGTGGAACCATTCAAATTTATGTCTAATCTCTAATGTTGTGGGAAAAGGGAAAAATTCATAATTAGATAAAGTAC

mRNA sequence

ATGATTTTCAACAAGGTCTTCTTCTTCTTCTACAACAACCTCATTGGCTTCCGGAGCCGGCCAAGATTCAAGCAAGCAACCCCGCTTCCCCGCAGTGGCAATTCGAGCCTTCGACCTTTGCCAACTGATGATTGTACTATCTTAGCTCTTTCGAGCCTCGAGAAGGCGTTGGAGGGCGAGACATGTTGCGTGTGCTTGTCAAGTATGGGAAACACAGACAGGGATGGAGATAAGGGTGTTGGCACAAGTGTTCTTCCTTGTTTGCATGAGTTTCATAAGGTATGCGTGGAACGGTGGTTCGAAGAGTGTCGTAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGGTAGTCATGAAGATGAGACTAATCAAATACTCACTGATGAGATGGTGATATGGTTTTCTTCTTTTCATACCTCTGGTTTTTGA

Coding sequence (CDS)

ATGATTTTCAACAAGGTCTTCTTCTTCTTCTACAACAACCTCATTGGCTTCCGGAGCCGGCCAAGATTCAAGCAAGCAACCCCGCTTCCCCGCAGTGGCAATTCGAGCCTTCGACCTTTGCCAACTGATGATTGTACTATCTTAGCTCTTTCGAGCCTCGAGAAGGCGTTGGAGGGCGAGACATGTTGCGTGTGCTTGTCAAGTATGGGAAACACAGACAGGGATGGAGATAAGGGTGTTGGCACAAGTGTTCTTCCTTGTTTGCATGAGTTTCATAAGGTATGCGTGGAACGGTGGTTCGAAGAGTGTCGTAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGGTAGTCATGAAGATGAGACTAATCAAATACTCACTGATGAGATGGTGATATGGTTTTCTTCTTTTCATACCTCTGGTTTTTGA

Homology

[Close]

BLAST of CSPI03G00570 vs. Swiss-Prot
Match: RN167_MOUSE (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-09
Identity = 32/101 (31.68%), Postives = 46/101 (45.54%), Query Frame = 1


Query: 31  RSGNSSLRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHE 90
           R     L+ +PT D         +K  E + C +CL        DGDK     VLPC H 
Sbjct: 207 RLTKEQLKQIPTHD--------YQKGDEYDVCAICLDEY----EDGDK---LRVLPCAHA 266

Query: 91  FHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQILTDE 132
           +H  CV+ W  + R+TCPIC+  +  G   E++  +    E
Sbjct: 267 YHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEETQEQE 292

[Close]

BLAST of CSPI03G00570 vs. Swiss-Prot
Match: RN167_HUMAN (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-09
Identity = 31/96 (32.29%), Postives = 45/96 (46.88%), Query Frame = 1


Query: 31  RSGNSSLRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHE 90
           R     L+ +PT D         +K  + + C +CL        DGDK     VLPC H 
Sbjct: 207 RLTKEQLKQIPTHD--------YQKGDQYDVCAICLDEY----EDGDK---LRVLPCAHA 266

Query: 91  FHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQ 127
           +H  CV+ W  + R+TCPIC+  +  G   ED+  +
Sbjct: 267 YHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEE 287

[Close]

BLAST of CSPI03G00570 vs. Swiss-Prot
Match: RN167_RAT (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 30/96 (31.25%), Postives = 45/96 (46.88%), Query Frame = 1


Query: 31  RSGNSSLRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHE 90
           R     L+ +PT D         +K  E + C +CL        DGDK     +LPC H 
Sbjct: 207 RLTKEQLKQIPTHD--------YQKGDEYDVCAICLDEY----EDGDK---LRILPCAHA 266

Query: 91  FHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQ 127
           +H  CV+ W  + R+TCPIC+  +  G   E++  +
Sbjct: 267 YHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEE 287

[Close]

BLAST of CSPI03G00570 vs. Swiss-Prot
Match: SDIR1_ARATH (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-07
Identity = 30/105 (28.57%), Postives = 47/105 (44.76%), Query Frame = 1


Query: 30  PRSGNSSLRPLPTDDCTILALSSLEKALEGE----TCCVCLSSMGNTDRDGDKGVGTSVL 89
           P +G S  +   T       L S  ++ +G     TC VCL  +         G     L
Sbjct: 175 PENGCSLAKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQV-------TVGEIVRTL 234

Query: 90  PCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQILTD 131
           PCLH+FH  C++ W  + + TCP+C++    G   +DE +   +D
Sbjct: 235 PCLHQFHAGCIDPWLRQ-QGTCPVCKFRAHSGWQEQDEIDDDASD 271

[Close]

BLAST of CSPI03G00570 vs. Swiss-Prot
Match: RNF13_CHICK (E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-07
Identity = 27/90 (30.00%), Postives = 44/90 (48.89%), Query Frame = 1


Query: 40  LPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERW 99
           L  D    L +   +K  E + C +CL        DGDK     +LPC H +H  CV+ W
Sbjct: 218 LRKDQLKKLPVHKFKKGDEYDVCAICLDEY----EDGDK---LRILPCSHAYHCKCVDPW 277

Query: 100 FEECRRTCPICRYSM---EGGGSHEDETNQ 127
             + ++TCP+C+  +   +G    E +++Q
Sbjct: 278 LTKTKKTCPVCKQKVVPSQGDSDSETDSSQ 300

[Close]

BLAST of CSPI03G00570 vs. TrEMBL
Match: A0A0A0L4W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002620 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-81
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1


Query: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60
           MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE
Sbjct: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60

Query: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120
           TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH
Sbjct: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120

Query: 121 EDETNQILTDEMVIWFSSFHTSGF 145
           EDETNQILTDEMVIWFSSFHTSGF
Sbjct: 121 EDETNQILTDEMVIWFSSFHTSGF 144

[Close]

BLAST of CSPI03G00570 vs. TrEMBL
Match: A0A0D2MHL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G007100 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.9e-22
Identity = 62/151 (41.06%), Postives = 84/151 (55.63%), Query Frame = 1


Query: 1   MIFNKVFFFFYNNLIGFRSR-----PRFKQATPLPRSGNSSLRPLPTDDCTILALSS--L 60
           MI NK+  F Y  ++G R        R K+A P P +    +  +        + SS  L
Sbjct: 1   MILNKLVTFIYT-IVGVRRSVSDEGKRTKEAAPPPPAAAGYVVVMEGTAMGSNSSSSSYL 60

Query: 61  EKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYS 120
           + + EGETCCVCLSSM       ++G  T VLPC HEFH+VCV++W   C++ CPICR+S
Sbjct: 61  QGSTEGETCCVCLSSM-------EEGEETRVLPCFHEFHRVCVDKWVNTCKKNCPICRFS 120

Query: 121 MEGGGSHEDETNQILTDEMVIWFSSFHTSGF 145
           M           +  T+EM+IWFSSFH +GF
Sbjct: 121 MGEEDRFMFHRREAFTEEMMIWFSSFHIAGF 143

[Close]

BLAST of CSPI03G00570 vs. TrEMBL
Match: A0A061DGH2_THECC (Nucleic acid binding protein, putative OS=Theobroma cacao GN=TCM_000153 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.9e-22
Identity = 60/145 (41.38%), Postives = 81/145 (55.86%), Query Frame = 1


Query: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSL-RPLPTDDCTILALSSLEKALEG 60
           M+ +K+  F YN LIG R   R K+A          + + +        A     +A EG
Sbjct: 1   MVLSKLVAFIYN-LIGVRVHARIKEAAAAYAVIKPDISKKVKEGQSNFQARPCAGEASEG 60

Query: 61  ETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGS 120
           E CCVCLS M    ++GD      VLPCLH+FH+VCV+RW + CR+ CP+CR+SM  G  
Sbjct: 61  EICCVCLSGM----KEGDD---MRVLPCLHQFHRVCVDRWLDGCRKNCPVCRFSM--GEE 120

Query: 121 HEDETNQILTDEMVIWFSSFHTSGF 145
                 +  T+EM+IWFSSFH +GF
Sbjct: 121 ERFHRREAFTEEMLIWFSSFHVAGF 135

[Close]

BLAST of CSPI03G00570 vs. TrEMBL
Match: W9SMW3_9ROSA (E3 ubiquitin-protein ligase Arkadia OS=Morus notabilis GN=L484_026635 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 62/144 (43.06%), Postives = 84/144 (58.33%), Query Frame = 1


Query: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60
           M+ NK F     N I  + +PR K+A P           L  ++    + +      EGE
Sbjct: 1   MVLNK-FLSVICNFISLKGQPRLKEA-PASWEVIEPNVELKLEEGLDESAAESSTGAEGE 60

Query: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120
            CCVCLS++       ++G  TS+LPC H+FHK CVERWF  C++TCPICR+SME    +
Sbjct: 61  FCCVCLSTLE------EEGEETSLLPCQHKFHKDCVERWFSLCKKTCPICRFSMEEDKCY 120

Query: 121 EDETNQILTDEMVIWFSSFHTSGF 145
           E E   +LT+EMVI+FSSFH +GF
Sbjct: 121 EGE---VLTEEMVIYFSSFHAAGF 133

[Close]

BLAST of CSPI03G00570 vs. TrEMBL
Match: U5GF03_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11150g PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.9e-21
Identity = 67/149 (44.97%), Postives = 78/149 (52.35%), Query Frame = 1


Query: 5   KVFFFFYNNLIGFRSRPRFKQATPLPR--------SGNSSLRPLPTDDCTILALSSLEKA 64
           K F  F  + IG R  PR K A             SGN     L   +  + + SS    
Sbjct: 4   KKFVSFVYSFIGLRWHPRIKDAAAAAACRRITVDVSGNVKQGVL---ESPVGSSSSEIIE 63

Query: 65  LEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEE-CRRTCPICRYSME 124
            EGE CCVCLS +   D D      TS LPCLH FHKVC+E WF   CRRTCP+CR SM 
Sbjct: 64  AEGEYCCVCLSRL-KADED------TSALPCLHRFHKVCIEGWFNNVCRRTCPLCRSSM- 123

Query: 125 GGGSHEDETNQILTDEMVIWFSSFHTSGF 145
           GG     +  +  T+EMVIWFSSFH +GF
Sbjct: 124 GGEERSHKREEQFTEEMVIWFSSFHVAGF 141

[Close]

BLAST of CSPI03G00570 vs. TAIR10
Match: AT3G51325.1 (AT3G51325.1 RING/U-box superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 7.5e-13
Identity = 36/84 (42.86%), Postives = 45/84 (53.57%), Query Frame = 1


Query: 58  EGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTC-PICRYSMEG 117
           E E C VCL  M   D           LPC HEFH +CV+ WF   R+ C P+CR+S   
Sbjct: 22  EEECCSVCLMRMEAKDV-------IKSLPCSHEFHSLCVDTWFNVSRKICCPLCRFS--- 81

Query: 118 GGSHEDETNQILTDEMVIWFSSFH 141
                  T  +LTDE+++WFSSFH
Sbjct: 82  ------PTTILLTDELLLWFSSFH 89

[Close]

BLAST of CSPI03G00570 vs. TAIR10
Match: AT3G55530.1 (AT3G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-08
Identity = 30/105 (28.57%), Postives = 47/105 (44.76%), Query Frame = 1


Query: 30  PRSGNSSLRPLPTDDCTILALSSLEKALEGE----TCCVCLSSMGNTDRDGDKGVGTSVL 89
           P +G S  +   T       L S  ++ +G     TC VCL  +         G     L
Sbjct: 175 PENGCSLAKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQV-------TVGEIVRTL 234

Query: 90  PCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETNQILTD 131
           PCLH+FH  C++ W  + + TCP+C++    G   +DE +   +D
Sbjct: 235 PCLHQFHAGCIDPWLRQ-QGTCPVCKFRAHSGWQEQDEIDDDASD 271

[Close]

BLAST of CSPI03G00570 vs. TAIR10
Match: AT4G32600.1 (AT4G32600.1 RING/U-box superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 7.3e-08
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 1


Query: 54  EKALEGE--TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICR 113
           E+A+ GE   CC+CL+   N +   +       LPC H FHK CV++W  +   +CP+C+
Sbjct: 353 ERAISGEDAVCCICLAKYANNEELRE-------LPCSHFFHKECVDKWL-KINASCPLCK 412

Query: 114 YSMEGGGSHEDETNQ-ILT 130
              E G  + D T+Q ILT
Sbjct: 413 --SEVGEKNSDLTSQGILT 421

[Close]

BLAST of CSPI03G00570 vs. TAIR10
Match: AT1G35630.1 (AT1G35630.1 Protease-associated (PA) RING/U-box zinc finger family protein)

HSP 1 Score: 53.9 bits (128), Expect = 9.5e-08
Identity = 21/65 (32.31%), Postives = 33/65 (50.77%), Query Frame = 1


Query: 53  LEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRY 112
           LE++    TC +C+        D   G    +LPC H++H VC++ W   CR  CP+C+ 
Sbjct: 224 LEESSTSVTCAICID-------DYCVGEKLRILPCKHKYHAVCIDSWLGRCRSFCPVCKQ 281

Query: 113 SMEGG 118
           +   G
Sbjct: 284 NPRTG 281

[Close]

BLAST of CSPI03G00570 vs. TAIR10
Match: AT1G35625.1 (AT1G35625.1 RING/U-box superfamily protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 25/81 (30.86%), Postives = 39/81 (48.15%), Query Frame = 1


Query: 37  LRPLPTDDCTILALSSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCV 96
           L+ +PT+  T      LE+     TC +C+        D   G    +LPC H++H VC+
Sbjct: 95  LQSMPTEVYT----GVLEEGSTSVTCAICID-------DYRVGEILRILPCKHKYHAVCI 154

Query: 97  ERWFEECRRTCPICRYSMEGG 118
           + W   CR  CP+C+ +   G
Sbjct: 155 DSWLGRCRSFCPVCKQNPRTG 164

[Close]

BLAST of CSPI03G00570 vs. NCBI nr
Match: gi|449456937|ref|XP_004146205.1| (PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 2.7e-81
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1


Query: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60
           MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE
Sbjct: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60

Query: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120
           TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH
Sbjct: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120

Query: 121 EDETNQILTDEMVIWFSSFHTSGF 145
           EDETNQILTDEMVIWFSSFHTSGF
Sbjct: 121 EDETNQILTDEMVIWFSSFHTSGF 144

[Close]

BLAST of CSPI03G00570 vs. NCBI nr
Match: gi|659095326|ref|XP_008448522.1| (PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 5 [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 5.5e-74
Identity = 137/149 (91.95%), Postives = 140/149 (93.96%), Query Frame = 1


Query: 1   MIFNKVFFFFYNNLIGFRSRP-RFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEG 60
           M+FNKVFFFFYNN IGFRSRP RFKQATPLP  GNSSLRP+PTDDCTI+ALSSLEKALEG
Sbjct: 1   MVFNKVFFFFYNNFIGFRSRPTRFKQATPLPHGGNSSLRPMPTDDCTIIALSSLEKALEG 60

Query: 61  ETCCVCLSSMGNTDRDGDKGV--GTSVLPCLHEFHKVCVERWFEECRRTCPICRYSME-- 120
           ETCCVCLSSMGNTD DGDKGV  GTSVLPCLHEFHKVCVERWFEECRRTCPICRYSME  
Sbjct: 61  ETCCVCLSSMGNTDGDGDKGVGNGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGG 120

Query: 121 GGGSHEDETNQILTDEMVIWFSSFHTSGF 145
           GGGSHEDETNQILTDEMVIWFSSFHTSGF
Sbjct: 121 GGGSHEDETNQILTDEMVIWFSSFHTSGF 149

[Close]

BLAST of CSPI03G00570 vs. NCBI nr
Match: gi|702482475|ref|XP_010033525.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 [Eucalyptus grandis])

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 1


Query: 51  SSLEKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPIC 110
           SS  +   GE CCVCLS +       D G    VLPC+HEFHK CV+RWF+ CRRTCPIC
Sbjct: 51  SSSGEPFGGEVCCVCLSGLKE-----DAGGDVRVLPCMHEFHKACVDRWFDACRRTCPIC 110

Query: 111 RYSM-EGGGSHEDETNQILTDEMVIWFSSFHTSGF 145
           R+SM E GG       + LT+EMVIWFSSFH +GF
Sbjct: 111 RFSMDEAGGDEGCRGEEELTEEMVIWFSSFHAAGF 140

[Close]

BLAST of CSPI03G00570 vs. NCBI nr
Match: gi|823138905|ref|XP_012469292.1| (PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Gossypium raimondii])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 62/151 (41.06%), Postives = 84/151 (55.63%), Query Frame = 1


Query: 1   MIFNKVFFFFYNNLIGFRSR-----PRFKQATPLPRSGNSSLRPLPTDDCTILALSS--L 60
           MI NK+  F Y  ++G R        R K+A P P +    +  +        + SS  L
Sbjct: 1   MILNKLVTFIYT-IVGVRRSVSDEGKRTKEAAPPPPAAAGYVVVMEGTAMGSNSSSSSYL 60

Query: 61  EKALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYS 120
           + + EGETCCVCLSSM       ++G  T VLPC HEFH+VCV++W   C++ CPICR+S
Sbjct: 61  QGSTEGETCCVCLSSM-------EEGEETRVLPCFHEFHRVCVDKWVNTCKKNCPICRFS 120

Query: 121 MEGGGSHEDETNQILTDEMVIWFSSFHTSGF 145
           M           +  T+EM+IWFSSFH +GF
Sbjct: 121 MGEEDRFMFHRREAFTEEMMIWFSSFHIAGF 143

[Close]

BLAST of CSPI03G00570 vs. NCBI nr
Match: gi|590702430|ref|XP_007046624.1| (Nucleic acid binding protein, putative [Theobroma cacao])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 60/145 (41.38%), Postives = 81/145 (55.86%), Query Frame = 1


Query: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSL-RPLPTDDCTILALSSLEKALEG 60
           M+ +K+  F YN LIG R   R K+A          + + +        A     +A EG
Sbjct: 1   MVLSKLVAFIYN-LIGVRVHARIKEAAAAYAVIKPDISKKVKEGQSNFQARPCAGEASEG 60

Query: 61  ETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGS 120
           E CCVCLS M    ++GD      VLPCLH+FH+VCV+RW + CR+ CP+CR+SM  G  
Sbjct: 61  EICCVCLSGM----KEGDD---MRVLPCLHQFHRVCVDRWLDGCRKNCPVCRFSM--GEE 120

Query: 121 HEDETNQILTDEMVIWFSSFHTSGF 145
                 +  T+EM+IWFSSFH +GF
Sbjct: 121 ERFHRREAFTEEMLIWFSSFHVAGF 135

The following BLAST results are available for this feature:

BLAST of CSPI03G00570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RN167_MOUSE	4.7e-09	31.68	E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1	[more]
RN167_HUMAN	6.2e-09	32.29	E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1 SV=1	[more]
RN167_RAT	1.1e-08	31.25	E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1	[more]
SDIR1_ARATH	5.8e-07	28.57	E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1	[more]
RNF13_CHICK	5.8e-07	30.00	E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1 SV=1	[more]

BLAST of CSPI03G00570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4W7_CUCSA	1.9e-81	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002620 PE=4 SV=1	[more]
A0A0D2MHL6_GOSRA	9.9e-22	41.06	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G007100 PE=4 SV=1	[more]
A0A061DGH2_THECC	9.9e-22	41.38	Nucleic acid binding protein, putative OS=Theobroma cacao GN=TCM_000153 PE=4 SV=...	[more]
W9SMW3_9ROSA	1.3e-21	43.06	E3 ubiquitin-protein ligase Arkadia OS=Morus notabilis GN=L484_026635 PE=4 SV=1	[more]
U5GF03_POPTR	4.9e-21	44.97	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11150g PE=4 SV=1	[more]

BLAST of CSPI03G00570 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51325.1	7.5e-13	42.86	RING/U-box superfamily protein	[more]
AT3G55530.1	3.3e-08	28.57	RING/U-box superfamily protein	[more]
AT4G32600.1	7.3e-08	37.97	RING/U-box superfamily protein	[more]
AT1G35630.1	9.5e-08	32.31	Protease-associated (PA) RING/U-box zinc finger family protein	[more]
AT1G35625.1	1.6e-07	30.86	RING/U-box superfamily protein	[more]

BLAST of CSPI03G00570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456937\|ref\|XP_004146205.1\|	2.7e-81	100.00	PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Cucumis sativus]	[more]
gi\|659095326\|ref\|XP_008448522.1\|	5.5e-74	91.95	PREDICTED: receptor homology region, transmembrane domain- and RING domain-conta...	[more]
gi\|702482475\|ref\|XP_010033525.1\|	2.0e-23	56.84	PREDICTED: E3 ubiquitin-protein ligase RNF13 [Eucalyptus grandis]	[more]
gi\|823138905\|ref\|XP_012469292.1\|	1.4e-21	41.06	PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Gossypium raimondii]	[more]
gi\|590702430\|ref\|XP_007046624.1\|	1.4e-21	41.38	Nucleic acid binding protein, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G00570.1	CSPI03G00570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 61..111 score: 7.0
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 62..110 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 62..111 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 53..115 score: 1.3
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 54..114 score: 9.28

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G00570	Cla014310	Watermelon (97103) v1	cpiwmB262
CSPI03G00570	Cla008916	Watermelon (97103) v1	cpiwmB200
CSPI03G00570	Csa3G002620	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G00570	MELO3C013749	Melon (DHL92) v3.5.1	cpimeB240
CSPI03G00570	ClCG10G000530	Watermelon (Charleston Gray)	cpiwcgB190
CSPI03G00570	Lsi01G005760	Bottle gourd (USVL1VR-Ls)	cpilsiB164
CSPI03G00570	Lsi07G010850	Bottle gourd (USVL1VR-Ls)	cpilsiB227
CSPI03G00570	MELO3C013749.2	Melon (DHL92) v3.6.1	cpimedB225
CSPI03G00570	CsaV3_3G000610	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G00570	Cla97C01G019970	Watermelon (97103) v2	cpiwmbB182
CSPI03G00570	Cla97C10G185100	Watermelon (97103) v2	cpiwmbB184
CSPI03G00570	Bhi03G000614	Wax gourd	cpiwgoB329
CSPI03G00570	Bhi11G000252	Wax gourd	cpiwgoB226
CSPI03G00570	Cucsa.322800	Cucumber (Gy14) v1	cgycpiB484
CSPI03G00570	CmaCh03G006660	Cucurbita maxima (Rimu)	cmacpiB666
CSPI03G00570	CmoCh16G012980	Cucurbita moschata (Rifu)	cmocpiB323
CSPI03G00570	CmoCh03G006920	Cucurbita moschata (Rifu)	cmocpiB658
CSPI03G00570	Cp4.1LG14g10290	Cucurbita pepo (Zucchini)	cpecpiB215
CSPI03G00570	CsGy3G000530	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G00570	Carg19461	Silver-seed gourd	carcpiB0467

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G00570	Melon (DHL92) v3.6.1	cpimedB254
CSPI03G00570	Cucumber (Gy14) v2	cgybcpiB272
CSPI03G00570	Silver-seed gourd	carcpiB0179
CSPI03G00570	Silver-seed gourd	carcpiB0441
CSPI03G00570	Silver-seed gourd	carcpiB0671
CSPI03G00570	Cucumber (Chinese Long) v3	cpicucB184
CSPI03G00570	Wild cucumber (PI 183967)	cpicpiB133
CSPI03G00570	Cucumber (Gy14) v1	cgycpiB025
CSPI03G00570	Cucurbita maxima (Rimu)	cmacpiB332
CSPI03G00570	Cucurbita maxima (Rimu)	cmacpiB840
CSPI03G00570	Cucurbita maxima (Rimu)	cmacpiB871
CSPI03G00570	Cucurbita moschata (Rifu)	cmocpiB825
CSPI03G00570	Cucurbita moschata (Rifu)	cmocpiB852
CSPI03G00570	Cucumber (Chinese Long) v2	cpicuB156
CSPI03G00570	Melon (DHL92) v3.5.1	cpimeB258
CSPI03G00570	Watermelon (Charleston Gray)	cpiwcgB212
CSPI03G00570	Cucurbita pepo (Zucchini)	cpecpiB064
CSPI03G00570	Cucurbita pepo (Zucchini)	cpecpiB485
CSPI03G00570	Cucurbita pepo (Zucchini)	cpecpiB557
CSPI03G00570	Cucurbita pepo (Zucchini)	cpecpiB853