CsGy6G031580 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G031580
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Protein preY, mitochondrial
Location	Chr6 : 29262089 .. 29263033 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAATAACCAAAGCCCTTCTGAAGGAAGCGACCTCTGGTTTCACCAACACGCTCTCCCAAATCCTTGTCTGCCCCCTCTCCAAACAACCTCTAAGGTCATCATTATTCCTTTTCGATTCCATCATTTTCAGTCATTCTCCTCAATCTGTGGTGCATAATTTGGTTTTATTTTCTGTTTTTTCATTAGGTATTGTGCGGCCTCGAATTCTCTCATCAGCGATACGATTGGTGTTTCTTTCCCTGTAAGTATCACCTTGAATTCTGTAAAAAAAAAATTGTACTCCGCTATAATTCTTCATCTCTGACCATTTTCTGTTTTCATTGTGATTTTCTTTTTCCTTACTAGCTTTCTGGTTCTTCTTTTAGATCATCTAGGGTGCTGTAGCTGGTTTGTTTTATGAAGTATTTCTCAATTTTGCTAGGTTAGGTAGTAAAAATAGTTGTAGGGATCAGCATCTAGTGTTGAAACCTTTGCTTCTTTTTTTTTCTCTCCTGTTGGAATGCCATCAATCCATTATCTAGCACTATGAATGACCGAGCAAGCATAGGGTTCAGGGAGGTATTCGTATCATATGTTATTTACGATTATAGACTAAAGGTTTAGAGTTAGAGATATATATAAACTCTCTAATCTATTGATGCCCCTTTATTATATGATATGAATAAACTGTTCTCTCTTTGCTTAAAGATATAAGTAGCATAATAGTAGTGAACTACATGGATCTGTATGTTGATGGTTGTTATTTACGCTTTCTTGTTTTCTTTATTTGTCTGTTTTATAACACCCCTTGTTTGGGGGAGTTAGGTTATAGGACATCTGTTTGTTGTATGTTGTAATTTTGCATACTGTTGTGTTAGATAAGGGACGGAATTCCTTGTTTGGTGCCGAAGGAAGGAAGAATAATTGAAAATGATGATGCATTGAAAGATGAGGATACT

mRNA sequence

ATGGTGAGAATAACCAAAGCCCTTCTGAAGGAAGCGACCTCTGGTTTCACCAACACGCTCTCCCAAATCCTTGTCTGCCCCCTCTCCAAACAACCTCTAAGGTCATCATTATTCCTTTTCGATTCCATCATTTTCAGTATTGTGCGGCCTCGAATTCTCTCATCAGCGATACGATTGGTGTTTCTTTCCCTGGACGGAATTCCTTGTTTGGTGCCGAAGGAAGGAAGAATAATTGAAAATGATGATGCATTGAAAGATGAGGATACT

Coding sequence (CDS)

ATGGTGAGAATAACCAAAGCCCTTCTGAAGGAAGCGACCTCTGGTTTCACCAACACGCTCTCCCAAATCCTTGTCTGCCCCCTCTCCAAACAACCTCTAAGGTCATCATTATTCCTTTTCGATTCCATCATTTTCAGTATTGTGCGGCCTCGAATTCTCTCATCAGCGATACGATTGGTGTTTCTTTCCCTGGACGGAATTCCTTGTTTGGTGCCGAAGGAAGGAAGAATAATTGAAAATGATGATGCATTGAAAGATGAGGATACT

Protein sequence

MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLVFLSLDGIPCLVPKEGRIIENDDALKDEDT

Homology

[Close]

BLAST of CsGy6G031580 vs. NCBI nr
Match: XP_011658060.1 (PREDICTED: protein preY, mitochondrial [Cucumis sativus] >KGN48943.1 hypothetical protein Csa_6G507170 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 9.9e-22
Identity = 62/89 (69.66%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLV 60
          MVRITKALLKEATSGFTNTLSQILVCPLSKQPLR          +      ++S  I + 
Sbjct: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLR----------YCAASNSLISDTIGVS 60

Query: 61 FLSLDGIPCLVPKEGRIIENDDALKDEDT 90
          F   DGIPCLVPKEGRIIENDDALKDEDT
Sbjct: 61 FPIRDGIPCLVPKEGRIIENDDALKDEDT 79

[Close]

BLAST of CsGy6G031580 vs. NCBI nr
Match: XP_008440859.1 (PREDICTED: UPF0434 protein ECH_0194 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 9.3e-20
Identity = 59/89 (66.29%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLV 60
          MVRI+KALLKEA+SGFTNTLSQILVCPLSKQPLR          +      ++S  I + 
Sbjct: 1  MVRISKALLKEASSGFTNTLSQILVCPLSKQPLR----------YCEASNSLISDTIGVS 60

Query: 61 FLSLDGIPCLVPKEGRIIENDDALKDEDT 90
          F   DGIPCLVPKEGRIIENDDALK EDT
Sbjct: 61 FPIRDGIPCLVPKEGRIIENDDALKGEDT 79

[Close]

BLAST of CsGy6G031580 vs. NCBI nr
Match: XP_022949957.1 (uncharacterized protein LOC111453193 [Cucurbita moschata] >XP_023544418.1 uncharacterized protein LOC111804007 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15
Identity = 51/89 (57.30%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLV 60
          MVRI+++LLKEA SG T TLS+ILVCPLSKQPLR          +      ++S  IR+ 
Sbjct: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLR----------YCEASNSLISDTIRVS 60

Query: 61 FLSLDGIPCLVPKEGRIIENDDALKDEDT 90
          F    G+PCLVPKEGRIIE DD LK EDT
Sbjct: 61 FPIRGGVPCLVPKEGRIIETDDGLKGEDT 79

[Close]

BLAST of CsGy6G031580 vs. NCBI nr
Match: XP_022977422.1 (uncharacterized protein LOC111477769 isoform X2 [Cucurbita maxima])

HSP 1 Score: 89.4 bits (220), Expect = 6.9e-15
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLV 60
          MVRI+++LLKEA SG T TLS+ILVCPLSKQPLR          +      ++S  IR+ 
Sbjct: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLR----------YCEASNSLISDTIRVS 60

Query: 61 FLSLDGIPCLVPKEGRIIENDDALKDEDT 90
          F    G+PCLVPKEG IIE DD LK EDT
Sbjct: 61 FPIRGGVPCLVPKEGTIIETDDGLKGEDT 79

[Close]

BLAST of CsGy6G031580 vs. NCBI nr
Match: XP_022132378.1 (uncharacterized protein LOC111005251 isoform X2 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 3.8e-13
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLV 60
          MVRI+ ALLK+A SG T TLS+ILVCPL+KQPLR          +      ++S  I + 
Sbjct: 1  MVRISGALLKDAGSGLTKTLSEILVCPLTKQPLR----------YCEASNSLISDTIGVS 60

Query: 61 FLSLDGIPCLVPKEGRIIENDDALKDED 89
          F    GIPCLVP++GRIIE DDALK ED
Sbjct: 61 FPIKGGIPCLVPRDGRIIETDDALKRED 78

[Close]

BLAST of CsGy6G031580 vs. TAIR10
Match: AT4G35905.1 (unknown protein)

HSP 1 Score: 67.8 bits (164), Expect = 3.9e-12
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLV 60
          MVR+ + LLK+A +    TLS+ILVCPLSKQPLR          F      ++S  I + 
Sbjct: 1  MVRLNRVLLKDAGNVIDKTLSEILVCPLSKQPLR----------FCEKTKSLVSDTIGVS 60

Query: 61 FLSLDGIPCLVPKEGRIIEND-DALK 86
          F   DGIPCLVPK+G+I+E + DA K
Sbjct: 61 FPIKDGIPCLVPKDGKILEEEGDASK 76

[Close]

BLAST of CsGy6G031580 vs. TrEMBL
Match: tr|A0A0A0KHC1|A0A0A0KHC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507170 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.6e-22
Identity = 62/89 (69.66%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLV 60
          MVRITKALLKEATSGFTNTLSQILVCPLSKQPLR          +      ++S  I + 
Sbjct: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLR----------YCAASNSLISDTIGVS 60

Query: 61 FLSLDGIPCLVPKEGRIIENDDALKDEDT 90
          F   DGIPCLVPKEGRIIENDDALKDEDT
Sbjct: 61 FPIRDGIPCLVPKEGRIIENDDALKDEDT 79

[Close]

BLAST of CsGy6G031580 vs. TrEMBL
Match: tr|A0A1S3B2Q6|A0A1S3B2Q6_CUCME (UPF0434 protein ECH_0194 OS=Cucumis melo OX=3656 GN=LOC103485154 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.2e-20
Identity = 59/89 (66.29%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLV 60
          MVRI+KALLKEA+SGFTNTLSQILVCPLSKQPLR          +      ++S  I + 
Sbjct: 1  MVRISKALLKEASSGFTNTLSQILVCPLSKQPLR----------YCEASNSLISDTIGVS 60

Query: 61 FLSLDGIPCLVPKEGRIIENDDALKDEDT 90
          F   DGIPCLVPKEGRIIENDDALK EDT
Sbjct: 61 FPIRDGIPCLVPKEGRIIENDDALKGEDT 79

[Close]

BLAST of CsGy6G031580 vs. TrEMBL
Match: tr|A0A061DFN1|A0A061DFN1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000154 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-12
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLV 60
          MVR+ K+LLK+A +G + TLS+ILVCPLSKQPLR          FS     ++S +I + 
Sbjct: 1  MVRLCKSLLKDAGTGLSKTLSEILVCPLSKQPLR----------FSEETASLISDSIGVS 60

Query: 61 FLSLDGIPCLVPKEGRIIENDDALKD 87
          F   DGIPCLVP++G+I++ DD + D
Sbjct: 61 FPIKDGIPCLVPRDGKILDIDDTMND 76

[Close]

BLAST of CsGy6G031580 vs. TrEMBL
Match: tr|A0A2R6Q230|A0A2R6Q230_ACTCH (Protein preY like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc24423 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLV 60
          MVR+++ALLK+   G + TLS+ILVCPLSKQPLR              R  ++S AI + 
Sbjct: 1  MVRVSRALLKDGGLGISKTLSEILVCPLSKQPLR----------ICEERNSLISDAIGVS 60

Query: 61 FLSLDGIPCLVPKEGRIIENDDALKDE 88
          +  +DGIPCLVP +G+II+N+D  K E
Sbjct: 61 YPIVDGIPCLVPNDGKIIDNNDMPKPE 77

[Close]

BLAST of CsGy6G031580 vs. TrEMBL
Match: tr|A0A2P5BXI9|A0A2P5BXI9_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_202110 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.2e-11
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1   MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRSSLFLFDSIIFSIVRPRILSSAIRLV 60
           MVRIT+ LL+EA SG    LS+ILVCPLSKQPLR          F      ++S AI + 
Sbjct: 46  MVRITRKLLQEAGSGLNKILSEILVCPLSKQPLR----------FCEKTNSLISEAIGVS 105

Query: 61  FLSLDGIPCLVPKEGRIIENDD 83
           F   DGIPCLVPK+G+I+E++D
Sbjct: 106 FPIKDGIPCLVPKDGKILESED 117

The following BLAST results are available for this feature:

BLAST of CsGy6G031580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658060.1	9.9e-22	69.66	PREDICTED: protein preY, mitochondrial [Cucumis sativus] >KGN48943.1 hypothetica...	[more]
XP_008440859.1	9.3e-20	66.29	PREDICTED: UPF0434 protein ECH_0194 [Cucumis melo]	[more]
XP_022949957.1	1.4e-15	57.30	uncharacterized protein LOC111453193 [Cucurbita moschata] >XP_023544418.1 unchar...	[more]
XP_022977422.1	6.9e-15	56.18	uncharacterized protein LOC111477769 isoform X2 [Cucurbita maxima]	[more]
XP_022132378.1	3.8e-13	54.55	uncharacterized protein LOC111005251 isoform X2 [Momordica charantia]	[more]

BLAST of CsGy6G031580 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35905.1	3.9e-12	47.67	unknown protein	[more]

BLAST of CsGy6G031580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G031580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHC1\|A0A0A0KHC1_CUCSA	6.6e-22	69.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507170 PE=4 SV=1	[more]
tr\|A0A1S3B2Q6\|A0A1S3B2Q6_CUCME	6.2e-20	66.29	UPF0434 protein ECH_0194 OS=Cucumis melo OX=3656 GN=LOC103485154 PE=4 SV=1	[more]
tr\|A0A061DFN1\|A0A061DFN1_THECC	6.2e-12	48.84	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000154 PE=4 SV=1	[more]
tr\|A0A2R6Q230\|A0A2R6Q230_ACTCH	4.0e-11	48.28	Protein preY like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc2...	[more]
tr\|A0A2P5BXI9\|A0A2P5BXI9_PARAD	5.2e-11	52.44	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_202110 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005651	Trm112-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G031580.1	CsGy6G031580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.20.25.10		coord: 23..88 e-value: 1.4E-6 score: 29.9
None	No IPR available	SUPERFAMILY	SSF158997	Trm112p-like	coord: 19..82
IPR005651	Trm112-like	PANTHER	PTHR33505	FAMILY NOT NAMED	coord: 10..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G031580	Cla014309	Watermelon (97103) v1	cgybwmB468
CsGy6G031580	Csa6G507170	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G031580	MELO3C007931	Melon (DHL92) v3.5.1	cgybmeB444
CsGy6G031580	ClCG01G020510	Watermelon (Charleston Gray)	cgybwcgB399
CsGy6G031580	CSPI06G32040	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G031580	CmaCh03G006670	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G031580	CmoCh03G006920	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G031580	Lsi01G005770	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G031580	Cp4.1LG10g00100	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G031580	MELO3C007931.2	Melon (DHL92) v3.6.1	cgybmedB440
CsGy6G031580	CsaV3_6G047390	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G031580	Cla97C01G019960	Watermelon (97103) v2	cgybwmbB394
CsGy6G031580	Carg00573	Silver-seed gourd	carcgybB0418

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G031580	Cucumber (Gy14) v2	cgybcgybB061
CsGy6G031580	Cucumber (Gy14) v2	cgybcgybB107
CsGy6G031580	Cucurbita maxima (Rimu)	cgybcmaB807
CsGy6G031580	Cucurbita maxima (Rimu)	cgybcmaB846
CsGy6G031580	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G031580	Cucurbita moschata (Rifu)	cgybcmoB787
CsGy6G031580	Cucurbita moschata (Rifu)	cgybcmoB827
CsGy6G031580	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G031580	Cucurbita pepo (Zucchini)	cgybcpeB716
CsGy6G031580	Cucurbita pepo (Zucchini)	cgybcpeB763
CsGy6G031580	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G031580	Cucumber (Chinese Long) v2	cgybcuB266
CsGy6G031580	Bottle gourd (USVL1VR-Ls)	cgyblsiB436
CsGy6G031580	Bottle gourd (USVL1VR-Ls)	cgyblsiB450
CsGy6G031580	Melon (DHL92) v3.5.1	cgybmeB436
CsGy6G031580	Melon (DHL92) v3.6.1	cgybmedB421
CsGy6G031580	Melon (DHL92) v3.6.1	cgybmedB433
CsGy6G031580	Watermelon (Charleston Gray)	cgybwcgB394
CsGy6G031580	Watermelon (Charleston Gray)	cgybwcgB471
CsGy6G031580	Watermelon (97103) v1	cgybwmB422
CsGy6G031580	Watermelon (97103) v1	cgybwmB445
CsGy6G031580	Wild cucumber (PI 183967)	cgybcpiB272
CsGy6G031580	Silver-seed gourd	carcgybB0360
CsGy6G031580	Silver-seed gourd	carcgybB0640
CsGy6G031580	Silver-seed gourd	carcgybB0969
CsGy6G031580	Cucumber (Chinese Long) v3	cgybcucB270
CsGy6G031580	Cucumber (Chinese Long) v3	cgybcucB277
CsGy6G031580	Watermelon (97103) v2	cgybwmbB400
CsGy6G031580	Watermelon (97103) v2	cgybwmbB479
CsGy6G031580	Wax gourd	cgybwgoB506
CsGy6G031580	Wax gourd	cgybwgoB598