Lsi01G005770 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTTCCTTTCACTCCTATTCTACTTTTTACTATTATTAGCCCCACTCAATAGGTCAAACCCCCTGATTTTCTGAAAATGAAAATGAAAATTATAATAAAGTCTCTATTGCGAATCTCCGGCCCCTGCAGTGAATTTAAACCTTTCGAAGAAGAAATTGAGACCGCGAAAAACTGAATCCAACCCAACTTTCTTCGAACTTCATTCTAAAATGGTGAGAATAAGCAAAGCGCTTTTGAAAGAAGCGAGCTCTGGTCTCACCAAAACGCTCTCCCAGATCCTGGTCTGCCCGCTCTCCAAACAACCTCTAAGGTGATCATTCCATTTCGATTCCATCATTCTCAATCATTCTCCTCAATCTGTTGTGCACAAATTTGGTTTGATTGTCTGTTTTTTTCATTAGATATTGTGAGGCGTCAAATTCTCTAATCAGCGATACGATTGGTGTTTCTTTCCCTGTAAGTATCGGCTTGAATTGTGTAAAAAATTCCATTCCTTTATAATTTTTCATCTCTGACTATTTTCTGATTTCATTTTGATTTTCCTTTTCCATACCAGCTTTCTGGTTCATCTTTTAGATCATCTAGGGTGCGTAGCTGTTATCCGACTTGCTTAACTAGCGAAAGCTTACATTAACTTTGTGTCATCTTATGATCTTACCTACTGATAGATCAAACCACTTCTTAGATTCGTTTGTTTTATGAAATATTTCTCAATTTTGCTAGATTAGGTAGTAAGAATGGCTGTAGGACGCAGCATGTAGTGTTGAAACAATTGGTTTTTCTTTTTCTCTTTTCTCCCCTTGTTAGAATGCCTTGAATATGTTTTTTTAGCGCAAGCATAGGGTTTATAGAGGCATTCATATTATATGTTATTTATGATTAGACCTAGGGTTTAGAGAGGTGTCATATATAAACCCTCTAACCTTATTAGCGTCTCTCCAATATGTATTATTTGATATTTCTCTTGGTTAATAAAGCTATTCTCTTCCTCTACCTGTAGATGTAACTACACTATAGGTGAATCACGTAAATCTCTTTGTCGATATTTATTGTTTACACTTTCTTGTTTTCTTTATTTGTCGATTTCGTAACACCCTTCCCTTGTGGGAGTTAGGTTATATGACATGTCTGTTTCAATTGTATGTTGTAATTTTACTTATGGTTGTGTTAGATAAGGGACGGAATTCCTTGCTTGGTGCCAAAGGATGGAAGGATAATCGAAACTGATGATGCATTGAAAGGTGAGGATACTGTTGAGATTCCTCGAGAAAAATGA CTTCCTTTCACTCCTATTCTACTTTTTACTATTATTAGCCCCACTCAATAGGTCAAACCCCCTGATTTTCTGAAAATGAAAATGAAAATTATAATAAAGTCTCTATTGCGAATCTCCGGCCCCTGCAGTGAATTTAAACCTTTCGAAGAAGAAATTGAGACCGCGAAAAACTGAATCCAACCCAACTTTCTTCGAACTTCATTCTAAAATGGTGAGAATAAGCAAAGCGCTTTTGAAAGAAGCGAGCTCTGGTCTCACCAAAACGCTCTCCCAGATCCTGGTCTGCCCGCTCTCCAAACAACCTCTAAGATATTGTGAGGCGTCAAATTCTCTAATCAGCGATACGATTGGTGTTTCTTTCCCTATAAGGGACGGAATTCCTTGCTTGGTGCCAAAGGATGGAAGGATAATCGAAACTGATGATGCATTGAAAGGTGAGGATACTGTTGAGATTCCTCGAGAAAAATGA ATGGTGAGAATAAGCAAAGCGCTTTTGAAAGAAGCGAGCTCTGGTCTCACCAAAACGCTCTCCCAGATCCTGGTCTGCCCGCTCTCCAAACAACCTCTAAGATATTGTGAGGCGTCAAATTCTCTAATCAGCGATACGATTGGTGTTTCTTTCCCTATAAGGGACGGAATTCCTTGCTTGGTGCCAAAGGATGGAAGGATAATCGAAACTGATGATGCATTGAAAGGTGAGGATACTGTTGAGATTCCTCGAGAAAAATGA MVRISKALLKEASSGLTKTLSQILVCPLSKQPLRYCEASNSLISDTIGVSFPIRDGIPCLVPKDGRIIETDDALKGEDTVEIPREK
BLAST of Lsi01G005770 vs. Swiss-Prot
Match: PREY_XENTR (Protein preY, mitochondrial OS=Xenopus tropicalis GN=pyurf PE=2 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 2.3e-11 Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1
BLAST of Lsi01G005770 vs. Swiss-Prot
Match: PREY_RAT (Protein preY, mitochondrial OS=Rattus norvegicus GN=Pyurf PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08 Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1
BLAST of Lsi01G005770 vs. Swiss-Prot
Match: PREY_BOVIN (Protein preY, mitochondrial OS=Bos taurus GN=PREY PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 4.1e-08 Identity = 24/50 (48.00%), Postives = 39/50 (78.00%), Query Frame = 1
BLAST of Lsi01G005770 vs. Swiss-Prot
Match: PREY_MOUSE (Protein preY, mitochondrial OS=Mus musculus GN=Pyurf PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 4.1e-08 Identity = 24/47 (51.06%), Postives = 37/47 (78.72%), Query Frame = 1
BLAST of Lsi01G005770 vs. Swiss-Prot
Match: PREY_HUMAN (Protein preY, mitochondrial OS=Homo sapiens GN=PYURF PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 5.3e-08 Identity = 24/48 (50.00%), Postives = 38/48 (79.17%), Query Frame = 1
BLAST of Lsi01G005770 vs. TrEMBL
Match: A0A0A0KHC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507170 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 1.8e-34 Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 1
BLAST of Lsi01G005770 vs. TrEMBL
Match: B9SYS9_RICCO (Protein preY, mitochondrial, putative OS=Ricinus communis GN=RCOM_0362130 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 1.3e-24 Identity = 58/80 (72.50%), Postives = 71/80 (88.75%), Query Frame = 1
BLAST of Lsi01G005770 vs. TrEMBL
Match: A0A067JVF8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25368 PE=4 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23 Identity = 52/73 (71.23%), Postives = 66/73 (90.41%), Query Frame = 1
BLAST of Lsi01G005770 vs. TrEMBL
Match: V4UH54_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026827mg PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 1.8e-23 Identity = 58/78 (74.36%), Postives = 69/78 (88.46%), Query Frame = 1
BLAST of Lsi01G005770 vs. TrEMBL
Match: A0A0B0N820_GOSAR (Protein preY, mitochondrial OS=Gossypium arboreum GN=F383_15115 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 2.4e-23 Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 1
BLAST of Lsi01G005770 vs. TAIR10
Match: AT4G35905.1 (AT4G35905.1 unknown protein) HSP 1 Score: 111.7 bits (278), Expect = 2.3e-25 Identity = 53/76 (69.74%), Postives = 67/76 (88.16%), Query Frame = 1
BLAST of Lsi01G005770 vs. NCBI nr
Match: gi|659080560|ref|XP_008440859.1| (PREDICTED: protein preY, mitochondrial [Cucumis melo]) HSP 1 Score: 160.2 bits (404), Expect = 1.6e-36 Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 1
BLAST of Lsi01G005770 vs. NCBI nr
Match: gi|778719790|ref|XP_011658060.1| (PREDICTED: protein preY, mitochondrial [Cucumis sativus]) HSP 1 Score: 152.9 bits (385), Expect = 2.5e-34 Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 1
BLAST of Lsi01G005770 vs. NCBI nr
Match: gi|223529261|gb|EEF31233.1| (Protein preY, mitochondrial precursor, putative [Ricinus communis]) HSP 1 Score: 120.2 bits (300), Expect = 1.8e-24 Identity = 58/80 (72.50%), Postives = 71/80 (88.75%), Query Frame = 1
BLAST of Lsi01G005770 vs. NCBI nr
Match: gi|1000943050|ref|XP_002531148.2| (PREDICTED: UPF0434 protein Pmen_1615 [Ricinus communis]) HSP 1 Score: 120.2 bits (300), Expect = 1.8e-24 Identity = 58/80 (72.50%), Postives = 71/80 (88.75%), Query Frame = 1
BLAST of Lsi01G005770 vs. NCBI nr
Match: gi|1009144369|ref|XP_015889761.1| (PREDICTED: UPF0434 protein GDI0182/Gdia_2252 [Ziziphus jujuba]) HSP 1 Score: 118.2 bits (295), Expect = 6.9e-24 Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |