CmoCh03G001490 (gene) Cucurbita moschata (Rifu)

NameCmoCh03G001490
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description40S ribosomal protein S28
LocationCmo_Chr03 : 2110423 .. 2110728 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGGTTGCGTTGATGGAGAATGATTTCCATTGCTGTCATCATATTGTTACCTCTGTTTTAAGTGTGGATTTCAGTGACTAGTTTGTTTCAAGACCCTTTGGTTCTGGGGCTGAATTTGTGA

mRNA sequence

ATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGGTTGCTGTGGATTTCAGTGACTAGTTTGTTTCAAGACCCTTTGGTTCTGGGGCTGAATTTGTGA

Coding sequence (CDS)

ATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGGTTGCTGTGGATTTCAGTGACTAGTTTGTTTCAAGACCCTTTGGTTCTGGGGCTGAATTTGTGA
BLAST of CmoCh03G001490 vs. Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-24
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 64

BLAST of CmoCh03G001490 vs. Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-24
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 63

BLAST of CmoCh03G001490 vs. Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-23
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 63

BLAST of CmoCh03G001490 vs. Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-19
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 1

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

BLAST of CmoCh03G001490 vs. Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-19
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 1

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

BLAST of CmoCh03G001490 vs. TrEMBL
Match: A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-26
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 64

BLAST of CmoCh03G001490 vs. TrEMBL
Match: A0A061EXX4_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.8e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 64

BLAST of CmoCh03G001490 vs. TrEMBL
Match: W9SDZ8_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_000157 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.5e-26
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 64

BLAST of CmoCh03G001490 vs. TrEMBL
Match: W9R147_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.5e-26
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 22 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 81

Query: 61 ARRL 65
          ARRL
Sbjct: 82 ARRL 85

BLAST of CmoCh03G001490 vs. TrEMBL
Match: W9SEX7_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.5e-26
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 91  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 150

Query: 61  ARRL 65
           ARRL
Sbjct: 151 ARRL 154

BLAST of CmoCh03G001490 vs. TAIR10
Match: AT3G10090.1 (AT3G10090.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-25
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 63

BLAST of CmoCh03G001490 vs. TAIR10
Match: AT5G03850.1 (AT5G03850.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-25
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 63

BLAST of CmoCh03G001490 vs. TAIR10
Match: AT5G64140.1 (AT5G64140.1 ribosomal protein S28)

HSP 1 Score: 110.2 bits (274), Expect = 6.4e-25
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 63

BLAST of CmoCh03G001490 vs. NCBI nr
Match: gi|449440915|ref|XP_004138229.1| (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-26
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 64

BLAST of CmoCh03G001490 vs. NCBI nr
Match: gi|590637502|ref|XP_007029134.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao])

HSP 1 Score: 125.2 bits (313), Expect = 5.4e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 64

BLAST of CmoCh03G001490 vs. NCBI nr
Match: gi|703110452|ref|XP_010099593.1| (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis])

HSP 1 Score: 124.4 bits (311), Expect = 9.3e-26
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 211 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 270

Query: 61  ARRL 65
           ARRL
Sbjct: 271 ARRL 274

BLAST of CmoCh03G001490 vs. NCBI nr
Match: gi|502091073|ref|XP_004489433.1| (PREDICTED: 40S ribosomal protein S28 [Cicer arietinum])

HSP 1 Score: 124.4 bits (311), Expect = 9.3e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRL 65
          ARRL
Sbjct: 61 ARRL 64

BLAST of CmoCh03G001490 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 124.4 bits (311), Expect = 9.3e-26
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 91  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 150

Query: 61  ARRL 65
           ARRL
Sbjct: 151 ARRL 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RS28_MAIZE1.3e-2490.6340S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1[more]
RS281_ARATH2.3e-2492.1940S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1[more]
RS282_ARATH1.1e-2389.0640S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1[more]
RS28_ICTPU1.7e-1980.0040S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1[more]
RS28_DANRE1.7e-1980.0040S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LPR2_CUCSA1.7e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1[more]
A0A061EXX4_THECC3.8e-2698.44Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3... [more]
W9SDZ8_9ROSA6.5e-2696.8840S ribosomal protein S28 OS=Morus notabilis GN=L484_000157 PE=3 SV=1[more]
W9R147_9ROSA6.5e-2696.8840S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1[more]
W9SEX7_9ROSA6.5e-2696.8840S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G10090.11.3e-2592.19 Nucleic acid-binding, OB-fold-like protein[more]
AT5G03850.11.3e-2592.19 Nucleic acid-binding, OB-fold-like protein[more]
AT5G64140.16.4e-2589.06 ribosomal protein S28[more]
Match NameE-valueIdentityDescription
gi|449440915|ref|XP_004138229.1|2.4e-26100.00PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus][more]
gi|590637502|ref|XP_007029134.1|5.4e-2698.44Nucleic acid-binding, OB-fold-like protein [Theobroma cacao][more]
gi|703110452|ref|XP_010099593.1|9.3e-2696.88Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis][more]
gi|502091073|ref|XP_004489433.1|9.3e-2698.44PREDICTED: 40S ribosomal protein S28 [Cicer arietinum][more]
gi|703132274|ref|XP_010105085.1|9.3e-2696.8840S ribosomal protein S28 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000289Ribosomal_S28e
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001490.1CmoCh03G001490.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000289Ribosomal protein S28ePRODOMPD005541coord: 1..46
score: 5.0
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 1..65
score: 21
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 1..65
score: 6.6
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 4..64
score: 8.9
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 1..65
score: 4.8
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 2..64
score: 3.51