CmoCh03G001490 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGGTTGCGTTGATGGAGAATGATTTCCATTGCTGTCATCATATTGTTACCTCTGTTTTAAGTGTGGATTTCAGTGACTAGTTTGTTTCAAGACCCTTTGGTTCTGGGGCTGAATTTGTGA ATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGGTTGCTGTGGATTTCAGTGACTAGTTTGTTTCAAGACCCTTTGGTTCTGGGGCTGAATTTGTGA ATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGGTTGCTGTGGATTTCAGTGACTAGTTTGTTTCAAGACCCTTTGGTTCTGGGGCTGAATTTGTGA
BLAST of CmoCh03G001490 vs. Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 1.3e-24 Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of CmoCh03G001490 vs. Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 2.3e-24 Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of CmoCh03G001490 vs. Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 1.1e-23 Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of CmoCh03G001490 vs. Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 1.7e-19 Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 1
BLAST of CmoCh03G001490 vs. Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 1.7e-19 Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 1
BLAST of CmoCh03G001490 vs. TrEMBL
Match: A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 1.7e-26 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of CmoCh03G001490 vs. TrEMBL
Match: A0A061EXX4_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 3.8e-26 Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of CmoCh03G001490 vs. TrEMBL
Match: W9SDZ8_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_000157 PE=3 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 6.5e-26 Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of CmoCh03G001490 vs. TrEMBL
Match: W9R147_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 6.5e-26 Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of CmoCh03G001490 vs. TrEMBL
Match: W9SEX7_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 6.5e-26 Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of CmoCh03G001490 vs. TAIR10
Match: AT3G10090.1 (AT3G10090.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 112.5 bits (280), Expect = 1.3e-25 Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of CmoCh03G001490 vs. TAIR10
Match: AT5G03850.1 (AT5G03850.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 112.5 bits (280), Expect = 1.3e-25 Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of CmoCh03G001490 vs. TAIR10
Match: AT5G64140.1 (AT5G64140.1 ribosomal protein S28) HSP 1 Score: 110.2 bits (274), Expect = 6.4e-25 Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 1
BLAST of CmoCh03G001490 vs. NCBI nr
Match: gi|449440915|ref|XP_004138229.1| (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus]) HSP 1 Score: 126.3 bits (316), Expect = 2.4e-26 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of CmoCh03G001490 vs. NCBI nr
Match: gi|590637502|ref|XP_007029134.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]) HSP 1 Score: 125.2 bits (313), Expect = 5.4e-26 Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of CmoCh03G001490 vs. NCBI nr
Match: gi|703110452|ref|XP_010099593.1| (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis]) HSP 1 Score: 124.4 bits (311), Expect = 9.3e-26 Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of CmoCh03G001490 vs. NCBI nr
Match: gi|502091073|ref|XP_004489433.1| (PREDICTED: 40S ribosomal protein S28 [Cicer arietinum]) HSP 1 Score: 124.4 bits (311), Expect = 9.3e-26 Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1
BLAST of CmoCh03G001490 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis]) HSP 1 Score: 124.4 bits (311), Expect = 9.3e-26 Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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