Carg13311 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13311
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S28
Location	Cucurbita_argyrosperma_scaffold_038 : 814460 .. 815685 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTCCATTCCAACCCACCGACCCAACCCACATGGCCCGGCCCAATCCACTTTATAAGAAACGTAAACCCTAGCTTCATATCTTTCTCTCGTTGCCGCACAAGCTTCTTCGATCGTCTTCCATCTCTTGCTCTCAGGTGTTTCTCTCTAAACTGTTGTATCTTGACATTTATCTTCCAGATAGTTGATTAAGTGCTCAGCTGTTTCTCAGTTTTGTTGCCGTTCAATCGTTGATTTCTTTTGTTTCTGTTGTTGAATTTATACGAGGCTGATAATTTTCGATTAGTAATTAAACAGGAAACTTAAGAATTGTTGCTATAGGTCTTCGTATTAAGGAGATGGCTACTGTGTTAACAGAGATTTCGCCTTCTTTGAGTTGAAGAACTAGCCTTCCTCGGATGTTTTACTGTATGGTTTAATTAAAAAATTTGTTAAGTTATTGGAATTATAATTATCGCCATGTGTTTTCTGGTAGATGATGATGTATTGTTTTAGCATGACGTCTAAAAGCACTTCTTCGTGTTTAAAATCACCTTTGATTGTTCTTAGTTATTCAGAATTAAATTTTACAGTATGATAATTACATTTCAAAATCACTGACGAACAGATCAGCCTTTATTGTGTTTGGAAGTGATTTGTAATGCTTTACGGAAAAGTCTGATTTCTTTGTGAGGAATAAGTTGCTGCAAAAAAGTTTTGGCTGCTAGATTTTAACACTCACAATCACAATGCGTTCACCTAGTAGCCATGAGGCCATTGAAAAAATAGATTTGCTTAGATGTATTGGGTTTAAATTATGTGTTGGCCATCTATGTATTTTGACTTTCCTTGGCAATAATTAGCAATCGAATGAAGTAGGGTTAGCAAGTGATAATCTGATCAAAAGTGCTTCTAATATCATTTGATTTAAATGTACTTCAAAACCCAAGTCCTTAGAGAAGTGCCATTATACGGAAAAAGGTTCACTCTGATTGTAGCTATAAGATTTGTTTGTTTGGTTTTTTAATAGGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTGAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCTAGACGGTTGCGTTGA

mRNA sequence

ATGGATCTCCATTCCAACCCACCGACCCAACCCACATGGCCCGGCCCAATCCACTTTATAAGAAACGTAAACCCTAGCTTCATATCTTTCTCTCGTTGCCGCACAAGCTTCTTCGATCGTCTTCCATCTCTTGCTCTCAGGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTGAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCTAGACGGTTGCGTTGA

Coding sequence (CDS)

ATGGATCTCCATTCCAACCCACCGACCCAACCCACATGGCCCGGCCCAATCCACTTTATAAGAAACGTAAACCCTAGCTTCATATCTTTCTCTCGTTGCCGCACAAGCTTCTTCGATCGTCTTCCATCTCTTGCTCTCAGGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTGAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCTAGACGGTTGCGTTGA

Protein sequence

MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of Carg13311 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 129.8 bits (325), Expect = 6.1e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 52  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 111
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 44  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 103

Query: 112 EARRLR 118
           EARRLR
Sbjct: 104 EARRLR 109

[Close]

BLAST of Carg13311 vs. NCBI nr
Match: XP_022922062.1 (40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 129.8 bits (325), Expect = 6.1e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 52  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 111
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 41  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 100

Query: 112 EARRLR 118
           EARRLR
Sbjct: 101 EARRLR 106

[Close]

BLAST of Carg13311 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 72/92 (78.26%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 26  SFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDD 85
           S +S  R R S F   P          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDD
Sbjct: 29  SCLSARRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDD 88

Query: 86  QNRYIMRNVKGPVREGDILTLLESEREARRLR 118
           QNRYIMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 89  QNRYIMRNVKGPVREGDILTLLESEREARRLR 120

[Close]

BLAST of Carg13311 vs. NCBI nr
Match: PON82409.1 (Ribosomal protein [Trema orientalis])

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 73/113 (64.60%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 5   SNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVK 64
           S     P+    I+ ++  +PS I   R     F+ L  L L      M+SQ+KHAVVVK
Sbjct: 35  SRSQPNPSLVRTINTLKPASPSSIFSPREPRRRFEALGDLKLS---TRMDSQVKHAVVVK 94

Query: 65  VMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 118
           VMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 95  VMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR 144

[Close]

BLAST of Carg13311 vs. NCBI nr
Match: XP_004138229.1 (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_008453374.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_008460765.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_011648782.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_011653430.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_016901435.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_016902595.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_022152253.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022159219.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022933469.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022924912.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022931965.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022932895.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_023007264.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022987319.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022966097.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022966510.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967935.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967936.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_023529556.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >XP_023516641.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >KGN63802.1 hypothetical protein Csa_1G021920 [Cucumis sativus] >KGN63803.1 hypothetical protein Csa_1G021930 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 3.0e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Carg13311 vs. TAIR10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.6 bits (283), Expect = 8.1e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Carg13311 vs. TAIR10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.6 bits (283), Expect = 8.1e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Carg13311 vs. TAIR10
Match: AT5G64140.1 (ribosomal protein S28)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Carg13311 vs. Swiss-Prot
Match: sp|P46302|RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.6e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Carg13311 vs. Swiss-Prot
Match: sp|Q9SR73|RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Carg13311 vs. Swiss-Prot
Match: sp|P34789|RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.6e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Carg13311 vs. Swiss-Prot
Match: sp|Q6PBK3|RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 57  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 116
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 117 R 118
           R
Sbjct: 69  R 69

[Close]

BLAST of Carg13311 vs. Swiss-Prot
Match: sp|Q90YP3|RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 57  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 116
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 117 R 118
           R
Sbjct: 69  R 69

[Close]

BLAST of Carg13311 vs. TrEMBL
Match: tr|A0A2P5EA46|A0A2P5EA46_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_217770 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26
Identity = 73/113 (64.60%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 5   SNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVK 64
           S     P+    I+ ++  +PS I   R     F+ L  L L      M+SQ+KHAVVVK
Sbjct: 35  SRSQPNPSLVRTINTLKPASPSSIFSPREPRRRFEALGDLKLS---TRMDSQVKHAVVVK 94

Query: 65  VMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 118
           VMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 95  VMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR 144

[Close]

BLAST of Carg13311 vs. TrEMBL
Match: tr|A0A0A0LPR2|A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Carg13311 vs. TrEMBL
Match: tr|A0A1S3CD61|A0A1S3CD61_CUCME (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Carg13311 vs. TrEMBL
Match: tr|A0A2R6S208|A0A2R6S208_ACTCH (40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc00788 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVLTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Carg13311 vs. TrEMBL
Match: tr|A0A2R6R534|A0A2R6R534_ACTCH (40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10144 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.4e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MESQIKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVLTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

The following BLAST results are available for this feature:

BLAST of Carg13311 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922061.1	6.1e-27	100.00	40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]	[more]
XP_022922062.1	6.1e-27	100.00	40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata]	[more]
XP_022134697.1	1.3e-26	78.26	40S ribosomal protein S28-1-like [Momordica charantia]	[more]
PON82409.1	2.3e-26	64.60	Ribosomal protein [Trema orientalis]	[more]
XP_004138229.1	3.0e-26	100.00	PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_008453374.1 PREDICT...	[more]

BLAST of Carg13311 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10090.1	8.1e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	8.1e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	3.1e-25	89.23	ribosomal protein S28	[more]

BLAST of Carg13311 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P46302\|RS28_MAIZE	8.6e-25	90.77	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
sp\|Q9SR73\|RS281_ARATH	1.5e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
sp\|P34789\|RS282_ARATH	5.6e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
sp\|Q6PBK3\|RS28_DANRE	1.4e-19	80.33	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
sp\|Q90YP3\|RS28_ICTPU	1.4e-19	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of Carg13311 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5EA46\|A0A2P5EA46_9ROSA	1.5e-26	64.60	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_217770 PE=3 SV=1	[more]
tr\|A0A0A0LPR2\|A0A0A0LPR2_CUCSA	2.0e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1	[more]
tr\|A0A1S3CD61\|A0A1S3CD61_CUCME	2.0e-26	100.00	40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1	[more]
tr\|A0A2R6S208\|A0A2R6S208_ACTCH	2.6e-26	98.46	40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_...	[more]
tr\|A0A2R6R534\|A0A2R6R534_ACTCH	3.4e-26	96.92	40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR028626	Ribosomal_S28e_CS
IPR000289	Ribosomal_S28e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13311-RA	Carg13311-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 52..117 e-value: 1.9E-35 score: 122.4
None	No IPR available	PANTHER	PTHR10769:SF6	40S RIBOSOMAL PROTEIN S28-1-RELATED	coord: 31..117
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 56..116 e-value: 2.0E-32 score: 110.9
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 31..117
IPR000289	Ribosomal protein S28e	PRODOM	PD005541		coord: 53..98 e-value: 6.0E-19 score: 225.0
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 53..117 score: 21.431
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 58..117 e-value: 1.29768E-34 score: 115.04
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 108..116
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 53..117

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13311	Cla012100	Watermelon (97103) v1	carwmB0577
Carg13311	ClCG04G005640	Watermelon (Charleston Gray)	carwcgB0566
Carg13311	CmaCh07G010910	Cucurbita maxima (Rimu)	carcmaB0818
Carg13311	CmaCh03G001450	Cucurbita maxima (Rimu)	carcmaB0812
Carg13311	CmoCh03G001490	Cucurbita moschata (Rifu)	carcmoB0792
Carg13311	Lsi01G017710	Bottle gourd (USVL1VR-Ls)	carlsiB527
Carg13311	Cp4.1LG10g11220	Cucurbita pepo (Zucchini)	carcpeB0826
Carg13311	Cla97C04G072230	Watermelon (97103) v2	carwmbB0606
Carg13311	Bhi03G002044	Wax gourd	carwgoB0694

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13311	Cucumber (Gy14) v2	carcgybB0583
Carg13311	Cucurbita moschata (Rifu)	carcmoB0795
Carg13311	Cucurbita pepo (Zucchini)	carcpeB0827
Carg13311	Cucurbita pepo (Zucchini)	carcpeB0830
Carg13311	Wild cucumber (PI 183967)	carcpiB0615
Carg13311	Cucumber (Chinese Long) v2	carcuB0609
Carg13311	Cucumber (Chinese Long) v3	carcucB0616
Carg13311	Melon (DHL92) v3.5.1	carmeB0585
Carg13311	Melon (DHL92) v3.6.1	carmedB0592