CmaCh07G010910 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G010910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	40S ribosomal protein S28
Location	Cma_Chr07 : 5875195 .. 5876718 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATAAAAAGGCCTATTCCAGCCCATCGACCCAACTCACACGGCCCGGCCCAATCCACTTTATAAGAAACGTATACCCTAGCTTGCAATTCTTCTCTCGTTGCCGCATTGCCGCACAAGCTTCTTCCTCGATCGTCTTCCATCTCTTGCTCTCAGGTGTTTCTCTCTAAACTGTTGTATCTTTACATTTATCTTCCAGATAGTTGATTAAGTGCGCAGCTGTTTCCCAGTTTTGTTTCCGTTAATCGTTGATTTCTTTTGTTTCTGTAGTTGAATTTATACGAGGCTGATAATTTTCGATTAGTAATTAAACAGGAAACTTAAGAACTGTTGCTATAGGTCTTCGTATTAAGGAGATGGTTACTGAGTTAACAGAGATTTCGCTTTCTTTGAGTTGAAGAACTAGCCTTCCTCGGATGTTTTAAATTGTTAAGTTATTGGAATTATAATTATCGCCATGTGTTTTCTGGTAGATGATGATGTATTGTTTTAGCATGACGTCTAAAAGCACTTCTTCGTGTTTAAAATCACCTTTGATTGTTCTTAGTTATTCAGAATTAAATTTTACAGTATGATAATTACATTTCAAAATCACTGACGAACATGTCAGCCTTTATTGTGTGTGGAAGTGATTTGTAATGCTTTACGGAAATGTCTGATTTCTTTGTGAGGAATAAGTTGCTGCAAATAACTTTTGGCTGCTAGATTTGTCAAAAAAACACGCAATCACAATGCGTTCACCTAGTAGCCATGAGGCCATTGAAAAAATAGATGTATTGGGTTTAAATTATGTTGGCCATCTATGTAGTATGACTTTCCTTAGGAATAATTAGCAATCGAATGAAGTAGGGTTAGCAATTGATAATCTGATAAAAAGTACTTTTGCTAATATCATTTGATTTAAATGTACTTCAAAACCCAAATCCTTAGAGAAGTGCCATTATACGGAAAAAGGTTCACTCTGATTGTTGCTATAAGATTTGTTTGTTTGGTTTTTTAATAGGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTCAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCAAGGCGGTTGCGTTGATGGAGAATTGCAGTTGCTTCCATTGTTTTTGACTCTTTGTAAGTGTGGATCCTTTTGTTCTGGGGATGAATGTGTGAACGGGTTTGGTAATTTAATTGAGTTTTGATGATATCAGCTGTGTGATCCACACTTGTAGGCTTATCATTGATGATTTTGTGTTCTTTTCATATATTGGTTATGCATCACCTAATACTCTATTTGGCAGCACACTTTGCACTGTGCACTTGCATTTATAAATATTATAATCTTTATGCCTCCCTTTTGGTAAATTGGGTTTCCAACGAGCCTAGTTACTATCATCCCC

mRNA sequence

ATGGGAAACTTAAGAACTGTTGCTATAGGTCTTCGTATTAAGGAGATGTATGATAATTACATTTCAAAATCACTGACGAACATGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTCAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCAAGGCGGTTGCGTTGATGGAGAATTGCAGTTGCTTCCATTGTTTTTGACTCTTTGTAAGTGTGGATCCTTTTGTTCTGGGGATGAATGTGTGAACGGGTTTGGTAATTTAATTGAGTTTTGATGATATCAGCTGTGTGATCCACACTTGTAGGCTTATCATTGATGATTTTGTGTTCTTTTCATATATTGGTTATGCATCACCTAATACTCTATTTGGCAGCACACTTTGCACTGTGCACTTGCATTTATAAATATTATAATCTTTATGCCTCCCTTTTGGTAAATTGGGTTTCCAACGAGCCTAGTTACTATCATCCCC

Coding sequence (CDS)

ATGGGAAACTTAAGAACTGTTGCTATAGGTCTTCGTATTAAGGAGATGTATGATAATTACATTTCAAAATCACTGACGAACATGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTCAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCAAGGCGGTTGCGTTGA

Protein sequence

MGNLRTVAIGLRIKEMYDNYISKSLTNMCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of CmaCh07G010910 vs. Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.3e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910 vs. Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of CmaCh07G010910 vs. Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.6e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of CmaCh07G010910 vs. Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 38 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 97
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 98 R 99
          R
Sbjct: 69 R 69

[Close]

BLAST of CmaCh07G010910 vs. Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 38 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 97
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 98 R 99
          R
Sbjct: 69 R 69

[Close]

BLAST of CmaCh07G010910 vs. TrEMBL
Match: W9RZ99_9ROSA (Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.0e-27
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 1


Query: 13  IKEMYDNYISKSLTNMCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIM 72
           + E+  N IS +       V MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IM
Sbjct: 196 VDELIPNQISSTR------VRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIM 255

Query: 73  RNVKGPVREGDILTLLESEREARRLR 99
           RNVKGPVREGDILTLLESEREARRLR
Sbjct: 256 RNVKGPVREGDILTLLESEREARRLR 275

[Close]

BLAST of CmaCh07G010910 vs. TrEMBL
Match: A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910 vs. TrEMBL
Match: A0A061EXX4_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910 vs. TrEMBL
Match: W9R147_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.5e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 22 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 81

Query: 94 ARRLR 99
          ARRLR
Sbjct: 82 ARRLR 86

[Close]

BLAST of CmaCh07G010910 vs. TrEMBL
Match: W9SEX7_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.5e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 91  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 150

Query: 94  ARRLR 99
           ARRLR
Sbjct: 151 ARRLR 155

[Close]

BLAST of CmaCh07G010910 vs. TAIR10
Match: AT3G10090.1 (AT3G10090.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.6 bits (283), Expect = 6.8e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of CmaCh07G010910 vs. TAIR10
Match: AT5G03850.1 (AT5G03850.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.6 bits (283), Expect = 6.8e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of CmaCh07G010910 vs. TAIR10
Match: AT5G64140.1 (AT5G64140.1 ribosomal protein S28)

HSP 1 Score: 111.7 bits (278), Expect = 2.6e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of CmaCh07G010910 vs. NCBI nr
Match: gi|703110452|ref|XP_010099593.1| (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis])

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 1


Query: 13  IKEMYDNYISKSLTNMCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIM 72
           + E+  N IS +       V MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IM
Sbjct: 196 VDELIPNQISSTR------VRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIM 255

Query: 73  RNVKGPVREGDILTLLESEREARRLR 99
           RNVKGPVREGDILTLLESEREARRLR
Sbjct: 256 RNVKGPVREGDILTLLESEREARRLR 275

[Close]

BLAST of CmaCh07G010910 vs. NCBI nr
Match: gi|449440915|ref|XP_004138229.1| (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910 vs. NCBI nr
Match: gi|590637502|ref|XP_007029134.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao])

HSP 1 Score: 125.9 bits (315), Expect = 3.8e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910 vs. NCBI nr
Match: gi|502091073|ref|XP_004489433.1| (PREDICTED: 40S ribosomal protein S28 [Cicer arietinum])

HSP 1 Score: 125.2 bits (313), Expect = 6.4e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 125.2 bits (313), Expect = 6.4e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 91  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 150

Query: 94  ARRLR 99
           ARRLR
Sbjct: 151 ARRLR 155

The following BLAST results are available for this feature:

BLAST of CmaCh07G010910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS28_MAIZE	9.3e-25	90.77	40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1	[more]
RS281_ARATH	1.2e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1	[more]
RS282_ARATH	4.6e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1	[more]
RS28_ICTPU	1.2e-19	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1	[more]
RS28_DANRE	1.2e-19	80.33	40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1	[more]

BLAST of CmaCh07G010910 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RZ99_9ROSA	9.0e-27	79.07	Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE...	[more]
A0A0A0LPR2_CUCSA	1.2e-26	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1	[more]
A0A061EXX4_THECC	2.6e-26	98.46	Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3...	[more]
W9R147_9ROSA	4.5e-26	96.92	40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1	[more]
W9SEX7_9ROSA	4.5e-26	96.92	40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1	[more]

BLAST of CmaCh07G010910 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10090.1	6.8e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	6.8e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	2.6e-25	89.23	ribosomal protein S28	[more]

BLAST of CmaCh07G010910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703110452\|ref\|XP_010099593.1\|	1.3e-26	79.07	Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis]	[more]
gi\|449440915\|ref\|XP_004138229.1\|	1.7e-26	100.00	PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus]	[more]
gi\|590637502\|ref\|XP_007029134.1\|	3.8e-26	98.46	Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]	[more]
gi\|502091073\|ref\|XP_004489433.1\|	6.4e-26	98.46	PREDICTED: 40S ribosomal protein S28 [Cicer arietinum]	[more]
gi\|703132274\|ref\|XP_010105085.1\|	6.4e-26	96.92	40S ribosomal protein S28 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000289	Ribosomal_S28e
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G010910.1	CmaCh07G010910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PRODOM	PD005541		coord: 34..79 score: 4.0
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 34..98 score: 21
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 30..98 score: 1.4
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 37..97 score: 1.5
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 34..98 score: 8.6
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 34..98 score: 3.34

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh07G010910	Cla012100	Watermelon (97103) v1	cmawmB829
CmaCh07G010910	ClCG04G005640	Watermelon (Charleston Gray)	cmawcgB763
CmaCh07G010910	CmoCh03G001490	Cucurbita moschata (Rifu)	cmacmoB864
CmaCh07G010910	Lsi01G017710	Bottle gourd (USVL1VR-Ls)	cmalsiB791
CmaCh07G010910	Cp4.1LG10g11220	Cucurbita pepo (Zucchini)	cmacpeB867
CmaCh07G010910	Cla97C04G072230	Watermelon (97103) v2	cmawmbB892
CmaCh07G010910	Bhi03G002044	Wax gourd	cmawgoB1063
CmaCh07G010910	Carg13311	Silver-seed gourd	carcmaB0818

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh07G010910	CmaCh03G001450	Cucurbita maxima (Rimu)	cmacmaB524

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G010910	Cucumber (Gy14) v1	cgycmaB0110
CmaCh07G010910	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G010910	Wild cucumber (PI 183967)	cmacpiB883
CmaCh07G010910	Cucumber (Chinese Long) v2	cmacuB867
CmaCh07G010910	Melon (DHL92) v3.5.1	cmameB802
CmaCh07G010910	Cucurbita pepo (Zucchini)	cmacpeB865
CmaCh07G010910	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G010910	Cucumber (Gy14) v2	cgybcmaB568
CmaCh07G010910	Melon (DHL92) v3.6.1	cmamedB902
CmaCh07G010910	Cucumber (Chinese Long) v3	cmacucB1021