CmaCh07G010910.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G010910.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	40S ribosomal protein S28
Location	Cma_Chr07 : 5875195 .. 5876718 (-)
Sequence length	601

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATAAAAAGGCCTATTCCAGCCCATCGACCCAACTCACACGGCCCGGCCCAATCCACTTTATAAGAAACGTATACCCTAGCTTGCAATTCTTCTCTCGTTGCCGCATTGCCGCACAAGCTTCTTCCTCGATCGTCTTCCATCTCTTGCTCTCAGGTGTTTCTCTCTAAACTGTTGTATCTTTACATTTATCTTCCAGATAGTTGATTAAGTGCGCAGCTGTTTCCCAGTTTTGTTTCCGTTAATCGTTGATTTCTTTTGTTTCTGTAGTTGAATTTATACGAGGCTGATAATTTTCGATTAGTAATTAAACAGGAAACTTAAGAACTGTTGCTATAGGTCTTCGTATTAAGGAGATGGTTACTGAGTTAACAGAGATTTCGCTTTCTTTGAGTTGAAGAACTAGCCTTCCTCGGATGTTTTAAATTGTTAAGTTATTGGAATTATAATTATCGCCATGTGTTTTCTGGTAGATGATGATGTATTGTTTTAGCATGACGTCTAAAAGCACTTCTTCGTGTTTAAAATCACCTTTGATTGTTCTTAGTTATTCAGAATTAAATTTTACAGTATGATAATTACATTTCAAAATCACTGACGAACATGTCAGCCTTTATTGTGTGTGGAAGTGATTTGTAATGCTTTACGGAAATGTCTGATTTCTTTGTGAGGAATAAGTTGCTGCAAATAACTTTTGGCTGCTAGATTTGTCAAAAAAACACGCAATCACAATGCGTTCACCTAGTAGCCATGAGGCCATTGAAAAAATAGATGTATTGGGTTTAAATTATGTTGGCCATCTATGTAGTATGACTTTCCTTAGGAATAATTAGCAATCGAATGAAGTAGGGTTAGCAATTGATAATCTGATAAAAAGTACTTTTGCTAATATCATTTGATTTAAATGTACTTCAAAACCCAAATCCTTAGAGAAGTGCCATTATACGGAAAAAGGTTCACTCTGATTGTTGCTATAAGATTTGTTTGTTTGGTTTTTTAATAGGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTCAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCAAGGCGGTTGCGTTGATGGAGAATTGCAGTTGCTTCCATTGTTTTTGACTCTTTGTAAGTGTGGATCCTTTTGTTCTGGGGATGAATGTGTGAACGGGTTTGGTAATTTAATTGAGTTTTGATGATATCAGCTGTGTGATCCACACTTGTAGGCTTATCATTGATGATTTTGTGTTCTTTTCATATATTGGTTATGCATCACCTAATACTCTATTTGGCAGCACACTTTGCACTGTGCACTTGCATTTATAAATATTATAATCTTTATGCCTCCCTTTTGGTAAATTGGGTTTCCAACGAGCCTAGTTACTATCATCCCC

mRNA sequence

ATGGGAAACTTAAGAACTGTTGCTATAGGTCTTCGTATTAAGGAGATGTATGATAATTACATTTCAAAATCACTGACGAACATGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTCAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCAAGGCGGTTGCGTTGATGGAGAATTGCAGTTGCTTCCATTGTTTTTGACTCTTTGTAAGTGTGGATCCTTTTGTTCTGGGGATGAATGTGTGAACGGGTTTGGTAATTTAATTGAGTTTTGATGATATCAGCTGTGTGATCCACACTTGTAGGCTTATCATTGATGATTTTGTGTTCTTTTCATATATTGGTTATGCATCACCTAATACTCTATTTGGCAGCACACTTTGCACTGTGCACTTGCATTTATAAATATTATAATCTTTATGCCTCCCTTTTGGTAAATTGGGTTTCCAACGAGCCTAGTTACTATCATCCCC

Coding sequence (CDS)

ATGGGAAACTTAAGAACTGTTGCTATAGGTCTTCGTATTAAGGAGATGTATGATAATTACATTTCAAAATCACTGACGAACATGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTCAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCAAGGCGGTTGCGTTGA

Protein sequence

MGNLRTVAIGLRIKEMYDNYISKSLTNMCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of CmaCh07G010910.1 vs. Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.3e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910.1 vs. Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of CmaCh07G010910.1 vs. Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.6e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of CmaCh07G010910.1 vs. Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 38 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 97
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 98 R 99
          R
Sbjct: 69 R 69

[Close]

BLAST of CmaCh07G010910.1 vs. Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 38 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 97
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 98 R 99
          R
Sbjct: 69 R 69

[Close]

BLAST of CmaCh07G010910.1 vs. TrEMBL
Match: W9RZ99_9ROSA (Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.0e-27
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 1


Query: 13  IKEMYDNYISKSLTNMCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIM 72
           + E+  N IS +       V MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IM
Sbjct: 196 VDELIPNQISSTR------VRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIM 255

Query: 73  RNVKGPVREGDILTLLESEREARRLR 99
           RNVKGPVREGDILTLLESEREARRLR
Sbjct: 256 RNVKGPVREGDILTLLESEREARRLR 275

[Close]

BLAST of CmaCh07G010910.1 vs. TrEMBL
Match: A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910.1 vs. TrEMBL
Match: A0A061EXX4_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910.1 vs. TrEMBL
Match: W9R147_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.5e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 22 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 81

Query: 94 ARRLR 99
          ARRLR
Sbjct: 82 ARRLR 86

[Close]

BLAST of CmaCh07G010910.1 vs. TrEMBL
Match: W9SEX7_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.5e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 91  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 150

Query: 94  ARRLR 99
           ARRLR
Sbjct: 151 ARRLR 155

[Close]

BLAST of CmaCh07G010910.1 vs. TAIR10
Match: AT3G10090.1 (AT3G10090.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.6 bits (283), Expect = 6.8e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of CmaCh07G010910.1 vs. TAIR10
Match: AT5G03850.1 (AT5G03850.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.6 bits (283), Expect = 6.8e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of CmaCh07G010910.1 vs. TAIR10
Match: AT5G64140.1 (AT5G64140.1 ribosomal protein S28)

HSP 1 Score: 111.7 bits (278), Expect = 2.6e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of CmaCh07G010910.1 vs. NCBI nr
Match: gi|703110452|ref|XP_010099593.1| (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis])

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 1


Query: 13  IKEMYDNYISKSLTNMCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIM 72
           + E+  N IS +       V MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IM
Sbjct: 196 VDELIPNQISSTR------VRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIM 255

Query: 73  RNVKGPVREGDILTLLESEREARRLR 99
           RNVKGPVREGDILTLLESEREARRLR
Sbjct: 256 RNVKGPVREGDILTLLESEREARRLR 275

[Close]

BLAST of CmaCh07G010910.1 vs. NCBI nr
Match: gi|449440915|ref|XP_004138229.1| (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910.1 vs. NCBI nr
Match: gi|590637502|ref|XP_007029134.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao])

HSP 1 Score: 125.9 bits (315), Expect = 3.8e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910.1 vs. NCBI nr
Match: gi|502091073|ref|XP_004489433.1| (PREDICTED: 40S ribosomal protein S28 [Cicer arietinum])

HSP 1 Score: 125.2 bits (313), Expect = 6.4e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESERE 60

Query: 94 ARRLR 99
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of CmaCh07G010910.1 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 125.2 bits (313), Expect = 6.4e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 34  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 93
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 91  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 150

Query: 94  ARRLR 99
           ARRLR
Sbjct: 151 ARRLR 155

The following BLAST results are available for this feature:

BLAST of CmaCh07G010910.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS28_MAIZE	9.3e-25	90.77	40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1	[more]
RS281_ARATH	1.2e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1	[more]
RS282_ARATH	4.6e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1	[more]
RS28_ICTPU	1.2e-19	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1	[more]
RS28_DANRE	1.2e-19	80.33	40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1	[more]

BLAST of CmaCh07G010910.1 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RZ99_9ROSA	9.0e-27	79.07	Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE...	[more]
A0A0A0LPR2_CUCSA	1.2e-26	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1	[more]
A0A061EXX4_THECC	2.6e-26	98.46	Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3...	[more]
W9R147_9ROSA	4.5e-26	96.92	40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1	[more]
W9SEX7_9ROSA	4.5e-26	96.92	40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1	[more]

BLAST of CmaCh07G010910.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10090.1	6.8e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	6.8e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	2.6e-25	89.23	ribosomal protein S28	[more]

BLAST of CmaCh07G010910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703110452\|ref\|XP_010099593.1\|	1.3e-26	79.07	Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis]	[more]
gi\|449440915\|ref\|XP_004138229.1\|	1.7e-26	100.00	PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus]	[more]
gi\|590637502\|ref\|XP_007029134.1\|	3.8e-26	98.46	Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]	[more]
gi\|502091073\|ref\|XP_004489433.1\|	6.4e-26	98.46	PREDICTED: 40S ribosomal protein S28 [Cicer arietinum]	[more]
gi\|703132274\|ref\|XP_010105085.1\|	6.4e-26	96.92	40S ribosomal protein S28 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000289	Ribosomal_S28e
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh07G010910	CmaCh07G010910	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh07G010910.1	CmaCh07G010910.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh07G010910.1.three_prime_UTR.1	CmaCh07G010910.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh07G010910.1.CDS.4	CmaCh07G010910.1.CDS.4	CDS
CmaCh07G010910.1.CDS.3	CmaCh07G010910.1.CDS.3	CDS
CmaCh07G010910.1.CDS.2	CmaCh07G010910.1.CDS.2	CDS
CmaCh07G010910.1.CDS.1	CmaCh07G010910.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh07G010910.1.exon.4	CmaCh07G010910.1.exon.4	exon
CmaCh07G010910.1.exon.3	CmaCh07G010910.1.exon.3	exon
CmaCh07G010910.1.exon.2	CmaCh07G010910.1.exon.2	exon
CmaCh07G010910.1.exon.1	CmaCh07G010910.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PRODOM	PD005541		coord: 34..79 score: 4.0
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 34..98 score: 21
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 30..98 score: 1.4
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 37..97 score: 1.5
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 34..98 score: 8.6
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 34..98 score: 3.34