ClCG04G005640 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G005640
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	40S ribosomal protein S28
Location	CG_Chr04 : 19454399 .. 19455175 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTCAAAGGAATACTTGAAAGCGATCACCTTGGCTTGTCCTGGTTAGTCATAGAAGCCATTGAGAAAATAAATGTTCTCAAAAGTAATGAATTTAAGCTATGTTGATCACCTTGGCCACCAAATGTGGTAGATTCAAGTGTATGTTTTTAGTAATATATGTTGAATCTATAGATTAAATAGAACTTGGAAAGCACTTCTAAGACTAGAGACTTCAAAACCAGACTTCATGGTGATTATTCAATAAACACCGTTTACTAAAATGGTTATAATCAAAACACACCTATAAGGAGGGTCATATTAATGGGACAAGGTTCAATCTAATTGTAAGATTTGTTTTAATTTTTTGGTTTGTTTGTGTAGGAATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACACTACTCGAGTCCGAGAGGGAGGCTAGAAGGTTGCGTTGATGCAAAATTTTCTGTTGGTGCCATCATATTTTTCCTTCTTTAAGTGTGGATTTTAGTGGCTAGTTTGTTTCAAGACATTTGATTCTGTGGCTGAATTTAGAACAAGATGAGGTAATTTAACTGAGTTTTGAAAAATTGTGGATTTTTTTACCTATTGCTTAATGGGAAGGAAATTTTTTATTTATTTTTTATTTTATTATTATTTTTTTTT

mRNA sequence

ATGGTTGTCAAAGGAATACTTGAAAGCGATCACCTTGGCTTGTCCTGGTTAGTCATAGAAGCCATTGAGAAAATAAATGTTCTCAAAAGAATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACACTACTCGAGTCCGAGAGGGAGGCTAGAAGGTTGCGTTGATGCAAAATTTTCTGTTGGTGCCATCATATTTTTCCTTCTTTAAGTGTGGATTTTAGTGGCTAGTTTGTTTCAAGACATTTGATTCTGTGGCTGAATTTAGAACAAGATGAGGTAATTTAACTGAGTTTTGAAAAATTGTGGATTTTTTTACCTATTGCTTAATGGGAAGGAAATTTTTTATTTATTTTTTATTTTATTATTATTTTTTTTT

Coding sequence (CDS)

ATGGTTGTCAAAGGAATACTTGAAAGCGATCACCTTGGCTTGTCCTGGTTAGTCATAGAAGCCATTGAGAAAATAAATGTTCTCAAAAGAATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACACTACTCGAGTCCGAGAGGGAGGCTAGAAGGTTGCGTTGA

Protein sequence

MVVKGILESDHLGLSWLVIEAIEKINVLKRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of ClCG04G005640 vs. Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-25
Identity = 59/65 (90.77%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 31 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 90
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 91 ARRLR 96
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of ClCG04G005640 vs. Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.9e-25
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 31 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 90
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 91 ARRLR 96
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of ClCG04G005640 vs. Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-24
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 31 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 90
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 91 ARRLR 96
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of ClCG04G005640 vs. Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.1e-20
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 35 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 94
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 95 R 96
          R
Sbjct: 69 R 69

[Close]

BLAST of ClCG04G005640 vs. Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.1e-20
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 35 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 94
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 95 R 96
          R
Sbjct: 69 R 69

[Close]

BLAST of ClCG04G005640 vs. TrEMBL
Match: W9R147_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-27
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 29 KRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 88
          KRMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESE
Sbjct: 20 KRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESE 79

Query: 89 REARRLR 96
          REARRLR
Sbjct: 80 REARRLR 86

[Close]

BLAST of ClCG04G005640 vs. TrEMBL
Match: A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 31 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 90
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 91 ARRLR 96
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of ClCG04G005640 vs. TrEMBL
Match: W9RZ99_9ROSA (Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-27
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 30  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 89
           RMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESER
Sbjct: 210 RMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER 269

Query: 90  EARRLR 96
           EARRLR
Sbjct: 270 EARRLR 275

[Close]

BLAST of ClCG04G005640 vs. TrEMBL
Match: W9SEX7_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-27
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 30  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 89
           RMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESER
Sbjct: 90  RMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER 149

Query: 90  EARRLR 96
           EARRLR
Sbjct: 150 EARRLR 155

[Close]

BLAST of ClCG04G005640 vs. TrEMBL
Match: A0A068U8S9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019765001 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-27
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 25  INVLKRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL 84
           ++   RM+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGD+LTL
Sbjct: 48  VSAFDRMDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDVLTL 107

Query: 85  LESEREARRLR 96
           LESEREARRLR
Sbjct: 108 LESEREARRLR 118

[Close]

BLAST of ClCG04G005640 vs. TAIR10
Match: AT3G10090.1 (AT3G10090.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 114.4 bits (285), Expect = 3.9e-26
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 31 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 90
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 91 ARRLR 96
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of ClCG04G005640 vs. TAIR10
Match: AT5G03850.1 (AT5G03850.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 114.4 bits (285), Expect = 3.9e-26
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 31 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 90
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 91 ARRLR 96
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of ClCG04G005640 vs. TAIR10
Match: AT5G64140.1 (AT5G64140.1 ribosomal protein S28)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-25
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 31 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 90
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 91 ARRLR 96
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of ClCG04G005640 vs. NCBI nr
Match: gi|703087605|ref|XP_010093316.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-27
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 29 KRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 88
          KRMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESE
Sbjct: 20 KRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESE 79

Query: 89 REARRLR 96
          REARRLR
Sbjct: 80 REARRLR 86

[Close]

BLAST of ClCG04G005640 vs. NCBI nr
Match: gi|449440915|ref|XP_004138229.1| (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 7.4e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 31 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 90
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 91 ARRLR 96
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of ClCG04G005640 vs. NCBI nr
Match: gi|661891636|emb|CDP04901.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 128.3 bits (321), Expect = 7.4e-27
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 25  INVLKRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL 84
           ++   RM+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGD+LTL
Sbjct: 48  VSAFDRMDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDVLTL 107

Query: 85  LESEREARRLR 96
           LESEREARRLR
Sbjct: 108 LESEREARRLR 118

[Close]

BLAST of ClCG04G005640 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 128.3 bits (321), Expect = 7.4e-27
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 30  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 89
           RMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESER
Sbjct: 90  RMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER 149

Query: 90  EARRLR 96
           EARRLR
Sbjct: 150 EARRLR 155

[Close]

BLAST of ClCG04G005640 vs. NCBI nr
Match: gi|703110452|ref|XP_010099593.1| (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis])

HSP 1 Score: 128.3 bits (321), Expect = 7.4e-27
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 30  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 89
           RMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESER
Sbjct: 210 RMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER 269

Query: 90  EARRLR 96
           EARRLR
Sbjct: 270 EARRLR 275

The following BLAST results are available for this feature:

BLAST of ClCG04G005640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS28_MAIZE	4.0e-25	90.77	40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1	[more]
RS281_ARATH	6.9e-25	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1	[more]
RS282_ARATH	2.6e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1	[more]
RS28_ICTPU	5.1e-20	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1	[more]
RS28_DANRE	5.1e-20	80.33	40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1	[more]

BLAST of ClCG04G005640 vs. TrEMBL


Match Name	E-value	Identity	Description
W9R147_9ROSA	1.3e-27	97.01	40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1	[more]
A0A0A0LPR2_CUCSA	5.1e-27	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1	[more]
W9RZ99_9ROSA	5.1e-27	96.97	Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE...	[more]
W9SEX7_9ROSA	5.1e-27	96.97	40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1	[more]
A0A068U8S9_COFCA	5.1e-27	88.73	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019765001 PE=3 SV=1	[more]

BLAST of ClCG04G005640 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10090.1	3.9e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	3.9e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	1.5e-25	89.23	ribosomal protein S28	[more]

BLAST of ClCG04G005640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703087605\|ref\|XP_010093316.1\|	1.9e-27	97.01	40S ribosomal protein S28 [Morus notabilis]	[more]
gi\|449440915\|ref\|XP_004138229.1\|	7.4e-27	100.00	PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus]	[more]
gi\|661891636\|emb\|CDP04901.1\|	7.4e-27	88.73	unnamed protein product [Coffea canephora]	[more]
gi\|703132274\|ref\|XP_010105085.1\|	7.4e-27	96.97	40S ribosomal protein S28 [Morus notabilis]	[more]
gi\|703110452\|ref\|XP_010099593.1\|	7.4e-27	96.97	Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000289	Ribosomal_S28e
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0009435	NAD biosynthetic process
biological_process	GO:0006769	nicotinamide metabolic process
biological_process	GO:0019357	nicotinate nucleotide biosynthetic process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0000309	nicotinamide-nucleotide adenylyltransferase activity
molecular_function	GO:0004515	nicotinate-nucleotide adenylyltransferase activity
molecular_function	GO:0016779	nucleotidyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G005640.1	ClCG04G005640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PRODOM	PD005541		coord: 31..76 score: 4.0
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 31..95 score: 21
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 31..95 score: 1.9
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 34..94 score: 1.4
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 31..95 score: 9.5
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 31..95 score: 2.83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG04G005640	Cla012100	Watermelon (97103) v1	wcgwmB255
ClCG04G005640	Cla97C04G072230	Watermelon (97103) v2	wcgwmbB200
ClCG04G005640	Bhi03G002044	Wax gourd	wcgwgoB385
ClCG04G005640	CmaCh03G001450	Cucurbita maxima (Rimu)	cmawcgB587
ClCG04G005640	CmaCh07G010910	Cucurbita maxima (Rimu)	cmawcgB763
ClCG04G005640	CmoCh03G001490	Cucurbita moschata (Rifu)	cmowcgB594
ClCG04G005640	Lsi01G017710	Bottle gourd (USVL1VR-Ls)	lsiwcgB144
ClCG04G005640	Cp4.1LG10g11220	Cucurbita pepo (Zucchini)	cpewcgB076
ClCG04G005640	CsGy4G010290	Cucumber (Gy14) v2	cgybwcgB284
ClCG04G005640	Carg13311	Silver-seed gourd	carwcgB0566
ClCG04G005640	Carg24090	Silver-seed gourd	carwcgB0213
ClCG04G005640	CsaV3_4G011770	Cucumber (Chinese Long) v3	cucwcgB320

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG04G005640	Cucumber (Gy14) v2	cgybwcgB285
ClCG04G005640	Melon (DHL92) v3.6.1	medwcgB523
ClCG04G005640	Cucumber (Chinese Long) v3	cucwcgB321
ClCG04G005640	Cucumber (Gy14) v1	cgywcgB067
ClCG04G005640	Cucurbita moschata (Rifu)	cmowcgB764
ClCG04G005640	Wild cucumber (PI 183967)	cpiwcgB318
ClCG04G005640	Cucumber (Chinese Long) v2	cuwcgB304
ClCG04G005640	Melon (DHL92) v3.5.1	mewcgB527
ClCG04G005640	Cucurbita pepo (Zucchini)	cpewcgB438