Carg24090 (gene) Silver-seed gourd

Overview
NameCarg24090
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein s28-like
LocationCucurbita_argyrosperma_scaffold_217 : 303982 .. 305458 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTCTCGTATCCTCAGTGGCCCATTCCAGCCCATTTACCGGCCCACACGGCCCAATCTACTTTATTTAACAAGAAAAAGGAAAAAAAAAAAAGTGAAAGTGAAAGAAGGATTATTATAAACGTAAGCCCTAGCCAAGTTCAACCCTCTCCCGCTGCCGCTCAATCTTTTTCGTCGATCTTCTTCCTTCTCTTGCTCTCAGGTTCTATCTCTAAACTCTCATCTCTCTGCTTCTTGCTTTTGTTCAATTTCCTGTAGAATTGAATCTGTTGATTTATCTGCCACATAGTTGACGAAAAGTTTGAGAATTTCCTAGTTTTGTTGCCATTTTTTTTTTGTTTCTGCGATTCAATTCTTACTCGACATATAATTTTCGAATAGTAACCAAACGGGAATCTTAAGAACTTCTGTAGGTCTTCGTAATAAGGATATGATTTTTGTTTTGCGAATTAAAAAATCTGGCCATGCTATGCGGACATTTTGTTTTAATGGCCTTAATTGAAATGTTATTAAGTTATTAGAATCGAACGTCTGCCTTGTGTTTTCTGTAATTTGTTGAACTGGCTTCTACGCATTAGGCCATTGGAATTGGTAAGTTGGAACTGTATGAGCGGTAGATGATGGCGGATTGTTTTAGCATGACTAACATCACTTTTGCTATCATTAAATGCCCTTACCACACAAATTTAGAGCATGTTTAGGAGTGATTTTGGTTAAAATTACCTTTGTTGTATTCAACATCACTTCAAAACATGTCGTTGATCATTCAAAAGCATTTTAATGTTTGGTTTTAACTTCTGGACATGGACATACCGTGAATTTTGATTCTGAATGTTTTGGAATGCTTTTGAATATGATAAATTACTCCCAAATATTACCTATTGTGTTTGAAAGTGATTTATGAATATTTTTGGGAAAAAAAAAATCAGAAGTTTTTGTGAGGAAACACTTTTGGAGCACTTTTGACCATTGTATTACTTAAAAGCAATCACCTTGGGTTGGCCAGTTAGTCATAGAGACCATTGGATATGTAAACTTGTGCGTTTAAGCTATGTTAATCTCCTCTGCAACCAAAGATAGTAGATTCAGACATATTTATTAAAAAGAACTTCAAAACCGAATACGATAGTGATTTTTCAATAAACACCATTACGAAAATAGTTATAATCAAGCTCAAATCAGTTTGTTTGTAAACACTTCAAAACACATCTATAAGGGGAGGGATCATTAGTGGGACTTCATTCTAATTGTAAGATTCTTTCTTGTTTATTGGTTTGGTTGTGTAGGAATGGAATCACAGATCAAACATGCTCTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGG

mRNA sequence

ATGGAATTCTCGTATCCTCAGTGGCCCATTCCAGCCCATTTACCGGCCCACACGGCCCAATCTACTTTATTTAACAAGAAAAAGGAAAAAAAAAAAAGTGAAAGTGAAAGAAGGATTATTATAAACGTAAGCCCTAGCCAAGTTCAACCCTCTCCCGCTGCCGCTCAATCTTTTTCGTCGATCTTCTTCCTTCTCTTGCTCTCAGGAATGGAATCACAGATCAAACATGCTCTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGG

Coding sequence (CDS)

ATGGAATTCTCGTATCCTCAGTGGCCCATTCCAGCCCATTTACCGGCCCACACGGCCCAATCTACTTTATTTAACAAGAAAAAGGAAAAAAAAAAAAGTGAAAGTGAAAGAAGGATTATTATAAACGTAAGCCCTAGCCAAGTTCAACCCTCTCCCGCTGCCGCTCAATCTTTTTCGTCGATCTTCTTCCTTCTCTTGCTCTCAGGAATGGAATCACAGATCAAACATGCTCTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGG

Protein sequence

MEFSYPQWPIPAHLPAHTAQSTLFNKKKEKKKSESERRIIINVSPSQVQPSPAAAQSFSSIFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Homology
[Close]
BLAST of Carg24090 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 68  SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 127
           +GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE
Sbjct: 43  AGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 102

Query: 128 REAR 132
           REAR
Sbjct: 103 REAR 106

[Close]
BLAST of Carg24090 vs. NCBI nr
Match: XP_022922062.1 (40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 68  SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 127
           +GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE
Sbjct: 40  AGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 99

Query: 128 REAR 132
           REAR
Sbjct: 100 REAR 103

[Close]
BLAST of Carg24090 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 6.3e-25
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 64  LLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL 123
           L+  S MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
Sbjct: 50  LVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL 109

Query: 124 LESEREAR 132
           LESEREAR
Sbjct: 110 LESEREAR 117

[Close]
BLAST of Carg24090 vs. NCBI nr
Match: XP_022928637.1 (40S ribosomal protein S28-1-like [Cucurbita moschata] >XP_023543090.1 40S ribosomal protein S28-1-like [Cucurbita pepo subsp. pepo] >XP_023543125.1 40S ribosomal protein S28-1-like [Cucurbita pepo subsp. pepo] >XP_023517350.1 40S ribosomal protein S28-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.9 bits (307), Expect = 8.3e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 62

[Close]
BLAST of Carg24090 vs. NCBI nr
Match: XP_004138229.1 (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_008453374.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_008460765.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_011648782.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_011653430.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_016901435.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_016902595.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_022152253.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022159219.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022933469.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022924912.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022931965.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022932895.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_023007264.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022987319.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022966097.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022966510.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967935.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967936.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_023529556.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >XP_023516641.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >KGN63802.1 hypothetical protein Csa_1G021920 [Cucumis sativus] >KGN63803.1 hypothetical protein Csa_1G021930 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 62

[Close]
BLAST of Carg24090 vs. TAIR10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 107.8 bits (268), Expect = 5.0e-24
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 61

[Close]
BLAST of Carg24090 vs. TAIR10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 107.8 bits (268), Expect = 5.0e-24
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 61

[Close]
BLAST of Carg24090 vs. TAIR10
Match: AT5G64140.1 (ribosomal protein S28)

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-23
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 61

[Close]
BLAST of Carg24090 vs. Swiss-Prot
Match: sp|P46302|RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.3e-23
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           M++Q+K A+VVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 62

[Close]
BLAST of Carg24090 vs. Swiss-Prot
Match: sp|Q9SR73|RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.0e-23
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 61

[Close]
BLAST of Carg24090 vs. Swiss-Prot
Match: sp|P34789|RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.4e-22
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 61

[Close]
BLAST of Carg24090 vs. Swiss-Prot
Match: sp|Q6PBK3|RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-18
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 74  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR 132
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREAR
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREAR 66

[Close]
BLAST of Carg24090 vs. Swiss-Prot
Match: sp|Q90YP3|RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-18
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 74  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR 132
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREAR
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREAR 66

[Close]
BLAST of Carg24090 vs. TrEMBL
Match: tr|A0A2R6R534|A0A2R6R534_ACTCH (40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10144 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MESQIKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVLTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 62

[Close]
BLAST of Carg24090 vs. TrEMBL
Match: tr|A0A0A0LPR2|A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 62

[Close]
BLAST of Carg24090 vs. TrEMBL
Match: tr|A0A1S3CD61|A0A1S3CD61_CUCME (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 62

[Close]
BLAST of Carg24090 vs. TrEMBL
Match: tr|A0A2R6S208|A0A2R6S208_ACTCH (40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc00788 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-24
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 70  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 129
           MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVLTLLESERE 60

Query: 130 AR 132
           AR
Sbjct: 61  AR 62

[Close]
BLAST of Carg24090 vs. TrEMBL
Match: tr|A0A0S3SUH5|A0A0S3SUH5_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G344000 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-24
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 59  SSIFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREG 118
           SS FFL +   MESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREG
Sbjct: 23  SSPFFLNI--RMESQVKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREG 82

Query: 119 DILTLLESEREAR 132
           DILTLLESEREAR
Sbjct: 83  DILTLLESEREAR 93

The following BLAST results are available for this feature:
BLAST of Carg24090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922061.12.8e-2596.8840S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata][more]
XP_022922062.12.8e-2596.8840S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata][more]
XP_022134697.16.3e-2592.6540S ribosomal protein S28-1-like [Momordica charantia][more]
XP_022928637.18.3e-25100.0040S ribosomal protein S28-1-like [Cucurbita moschata] >XP_023543090.1 40S riboso... [more]
XP_004138229.11.8e-2498.39PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_008453374.1 PREDICT... [more]
BLAST of Carg24090 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10090.15.0e-2490.32Nucleic acid-binding, OB-fold-like protein[more]
AT5G03850.15.0e-2490.32Nucleic acid-binding, OB-fold-like protein[more]
AT5G64140.11.9e-2387.10ribosomal protein S28[more]
BLAST of Carg24090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P46302|RS28_MAIZE5.3e-2388.7140S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1[more]
sp|Q9SR73|RS281_ARATH9.0e-2390.3240S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1[more]
sp|P34789|RS282_ARATH3.4e-2287.1040S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1[more]
sp|Q6PBK3|RS28_DANRE2.3e-1879.3140S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1[more]
sp|Q90YP3|RS28_ICTPU2.3e-1879.3140S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1[more]
BLAST of Carg24090 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2R6R534|A0A2R6R534_ACTCH1.2e-2496.7740S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_... [more]
tr|A0A0A0LPR2|A0A0A0LPR2_CUCSA1.2e-2498.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1[more]
tr|A0A1S3CD61|A0A1S3CD61_CUCME1.2e-2498.3940S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1[more]
tr|A0A2R6S208|A0A2R6S208_ACTCH1.6e-2496.7740S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_... [more]
tr|A0A0S3SUH5|A0A0S3SUH5_PHAAN2.1e-2487.67Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 G... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR000289Ribosomal_S28e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24090-RACarg24090-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 69..131
e-value: 2.3E-33
score: 115.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..53
NoneNo IPR availablePANTHERPTHR10769:SF640S RIBOSOMAL PROTEIN S28-1-RELATEDcoord: 42..131
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 73..131
e-value: 9.8E-31
score: 105.4
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 42..131
IPR000289Ribosomal protein S28ePRODOMPD005541coord: 70..115
e-value: 6.0E-19
score: 226.0
IPR000289Ribosomal protein S28eCDDcd04457S1_S28Ecoord: 75..131
e-value: 2.40734E-34
score: 114.655
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 70..131

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg24090Cla012100Watermelon (97103) v1carwmB0207
Carg24090ClCG04G005640Watermelon (Charleston Gray)carwcgB0213
Carg24090CmaCh03G001450Cucurbita maxima (Rimu)carcmaB0300
Carg24090CmoCh03G001490Cucurbita moschata (Rifu)carcmoB0304
Carg24090Cp4.1LG10g11220Cucurbita pepo (Zucchini)carcpeB0307
Carg24090Cla97C04G072230Watermelon (97103) v2carwmbB0221
Carg24090Bhi03G002044Wax gourdcarwgoB0272
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None