CmaCh03G001450 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G001450
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	40S ribosomal protein S28
Location	Cma_Chr03 : 1725273 .. 1728272 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAGAAGATACAAGGGAATGTCAGTGCTTCCGCTCTTAAGAAGCGAGAAGTAGGTAATGTGACCGTGTTGCAGGAGATATAGGGGAATGTCGGGTCCTCCGCTCTTTAGAAGCGAGAAGTAGGTTATGTGACCATGTCACAGGAATGCAAGAGAATGTCGGGGGGCCTTCACTCTTTAGAAAGCGAGAAGAAGGTAATGTGACCATGTCGCTAGAGTTACAAGGGAATGTTGAGACTTCTGCTCTTTAGAAGCGAGAAGTAGGTAATGTGACCATGTCGCAGTGGATGCAGGGGAATGTCGAGATCTCTACTCTTTAGAAGCGAGAAATAGGTAATGCGACCATGTCACATGAGATGCAGGGGAATGACAGGGGGCCTTCACTCTTTAGAAAATGAGAAGTATGTAATGTGAACCATGTTGCAAGAGATATAGGGGAATGTCGGGGCTGTCGCTCTTTAGAAGCGAGAAATAGGTCATGTGACCACGTTGCAAGGGATGCAGAGGAATGTCGGGGTCTCCGCTCTTTAGAAACGAGAAGTAGGTAATGTGACTATGTCGTAAGAGATACAGAGGAATTTGGAATCTTTGCTCTTTAAAAATGAGAAGTAGATAATGTGACGGTATTGCAAGCGATGTAGGAAAATGTCAGGGTAATCAAGTGCACGATTCTTTTTTTTTTTTTTTTTTTTTTTTTGAAGTTTTANTTTAAAATTTAAAAGGCTAGTTTTTATTAATTTAGATTTTTTTTACCTATTTAATTTAGTCATTTACATGATAATTTATGGAATTCTCGCATTCCTCAGTGGCCCATTACAGCCCATTTACCGGCCCACACGGCCCAATCCACTCTATTTAACAAGAAAAAAGGGGAAAAAAAATAAAAAAGTGAAAGAAGGATTATTATACACGTAAACCCTAGCCAAGTTCATCCTTCCCCCGCTGCCGCTCAATCTTTTTCGTCGATCTTCTTCCTTCTCTTGCTCTCAGGTTCTCTCTCTAAATTCTTATCTCTCTGCTTCTTGCTTGTGTTCAATTTCCAGTAGAATTGAATTTCTTGATTTATCTGCCAGATAGTTGACAAAAAGTCCGAGAATTTCCTAGTTTTGTTGCCATTTTTTTTTTTTTTTTTGTTTCTGCGGTTCAATTCTTACTCGACATATAATTTTCGAATAGTAACCAAACGGGAATCTTAACAACTGCTGTAGGTCTTCGTAATAAGGATATGATTTTTTTTTTTTGCGAATTAAAAAATCTGGCCATGCTATGCAGATATTTTGTTTTAATGGCCTTGATTGAAATTTTATTAAGTTATTAGAATCGTAACGTCTGCCATGTGTTTTCTGTAATTTGTTGAACTGTGTTCTACGCATTAGGCCATTGGAATTGGTAAGTTGGAACTGTATGAGCGGTAGATGATGGCGGATTGTTTTAGCATGACTAACATCACTTTTGCTATCATTAAAAGCCCTTACCACACAAATTTAGAGCATGTTTAGGAGTGATTTTGGTTAAAATTACCTTTGTTGTATTCAACATCACTTCAAAACATGTCGTTGATCATTCAAAAGCATTTTAATGTTTGGTTTTAACTTTTGGACATGGACATACGGTCAATTTTGATTCTGAATGTTTTGGAATGCTTTTGAATATGATAAAATTACTCCCAAATATTGCCTATTGGGTTTGGAAGTGATTTATGAATATTTTTGGGAAAATAATCTGTAGTTTTTGTGAGGAAACACTTTTGGAGCACTTTTGACCAAAATGATTGTCAATGTGTTACTTAAAAGCAATCAACTTGGGTTGGCCGGTTAGTCATAGAGACCATTGGAAAAGTAAACCTGTACGTTTAAGCTATGTTAATCACCTCGGCAACCAAAGATAGTAGAGTCGGACATATTTATTAAAAAGAACTTCAAAACCGAATACCATAGTGATTTTTCAATAAACACCGTTACTAAAATAGTTATAATCAAGCTTAAATCGGTTTGTTTGAAAACACTTCAAAACACATCTACAAGGGGAGGCGTCATTAGTGGGACTTCATTCTAATTGTAAGATTCTTTCTTGTTTATTGCTTTGGTTGTGTAGGAATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAACGTTAAGGGACCAGTCAGGGAAGGTGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGGTTGCGTTGAATGAGAACGATTTCCGTTGCTGTCATCATTTTGTTACCTCTGTTTTAAGTGTGGATTTCAGTGACTAGTTTGTTTTAAGACCCTTTGGTTCTGGGGCTGAATTTCTGAACTGGATGAGGTAACTTAATTGAGTTTTGATGCTACCAAGGTTTTCTCATGCAAAATTGTGCATTTTTGCTCATTGCTTAATGGAAGGGGATGCTTGTTTCTTGCGTTATTTTGGTCATGCATCTTGTGTTCGAGTTGTCTGCTAAGTTTTAAGGTCTGTGAAGTAAACCACTTTAGTTTCCTAGTTTTTGAACATGAAAAAAAAAGTACCATTGTTTTCCTGTCGAATTGAGATGCTCTAGTATTGTTTCCTAGGAGTAGCGTGTCTACTGATTTCACCATAACAACTTGCTCGAAATCGTGTCTACTGATTTTACTATAACGACTTTCTCGAAATCAGTTGGAGGCTTATCAACCTGATAAATGCATCTGTCTGTCACTACTTTGGATTTCATTATATAATATCATTCATGTTGGCAAGATATCAATGCATCCCTCAAATTGATATTACTTTGCTGAATGGCAAAGTACAATATTAGCTTAAACTATACAGAAGAACTCTAAGCTCTAAGCCTACACTTATTTTTTTTATTTTATTATTATTATTTTTGTACATCACCGCATCAACCTCTGGTAGAGAGTTGTAACAACCTGC

mRNA sequence

ATGTTGCAGAAGATACAAGGGAATGTCAGTGCTTCCGCTCTTAAGAAGCGAGAAGTAGGGGAATGTCGGGGCTGTCGCTCTTTAGAAGCGAGAAATAGGTCATGTGACCACGTTGCAAGGGATGCAGAGGAATGTCGGGGTCTCCGCTCTTTAGAAACGAGAAGTAGCCAAGTTCATCCTTCCCCCGCTGCCGCTCAATCTTTTTCGTCGATCTTCTTCCTTCTCTTGCTCTCAGGAATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAACGTTAAGGGACCAGTCAGGGAAGGTGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGGTTGCGTTGAATGAGAACGATTTCCGTTGCTGTCATCATTTTGTTACCTCTGTTTTAAGTGTGGATTTCAGTGACTAGTTTGTTTTAAGACCCTTTGGTTCTGGGGCTGAATTTCTGAACTGGATGAGGTAACTTAATTGAGTTTTGATGCTACCAAGGTTTTCTCATGCAAAATTGTGCATTTTTGCTCATTGCTTAATGGAAGGGGATGCTTGTTTCTTGCGTTATTTTGGTCATGCATCTTGTGTTCGAGTTGTCTGCTAAGTTTTAAGGTCTGTGAAGTAAACCACTTTAGTTTCCTAGTTTTTGAACATGAAAAAAAAAGTACCATTGTTTTCCTGTCGAATTGAGATGCTCTAGTATTGTTTCCTAGGAGTAGCGTGTCTACTGATTTCACCATAACAACTTGCTCGAAATCGTGTCTACTGATTTTACTATAACGACTTTCTCGAAATCAGTTGGAGGCTTATCAACCTGATAAATGCATCTGTCTGTCACTACTTTGGATTTCATTATATAATATCATTCATGTTGGCAAGATATCAATGCATCCCTCAAATTGATATTACTTTGCTGAATGGCAAAGTACAATATTAGCTTAAACTATACAGAAGAACTCTAAGCTCTAAGCCTACACTTATTTTTTTTATTTTATTATTATTATTTTTGTACATCACCGCATCAACCTCTGGTAGAGAGTTGTAACAACCTGC

Coding sequence (CDS)

ATGTTGCAGAAGATACAAGGGAATGTCAGTGCTTCCGCTCTTAAGAAGCGAGAAGTAGGGGAATGTCGGGGCTGTCGCTCTTTAGAAGCGAGAAATAGGTCATGTGACCACGTTGCAAGGGATGCAGAGGAATGTCGGGGTCTCCGCTCTTTAGAAACGAGAAGTAGCCAAGTTCATCCTTCCCCCGCTGCCGCTCAATCTTTTTCGTCGATCTTCTTCCTTCTCTTGCTCTCAGGAATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAACGTTAAGGGACCAGTCAGGGAAGGTGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGGTTGCGTTGA

Protein sequence

MLQKIQGNVSASALKKREVGECRGCRSLEARNRSCDHVARDAEECRGLRSLETRSSQVHPSPAAAQSFSSIFFLLLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of CmaCh03G001450 vs. Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh03G001450 vs. Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh03G001450 vs. Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.8e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh03G001450 vs. Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 84  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 143
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 144 R 145
           R
Sbjct: 69  R 69

[Close]

BLAST of CmaCh03G001450 vs. Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 84  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 143
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 144 R 145
           R
Sbjct: 69  R 69

[Close]

BLAST of CmaCh03G001450 vs. TrEMBL
Match: A0A0S3SUH5_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.08G344000 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 63  AAAQSFSSIFFLLLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVK 122
           AAA   SS FFL +   MESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVK
Sbjct: 17  AAATLASSPFFLNIR--MESQVKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVK 76

Query: 123 GPVREGDILTLLESEREARRLR 145
           GPVREGDILTLLESEREARRLR
Sbjct: 77  GPVREGDILTLLESEREARRLR 96

[Close]

BLAST of CmaCh03G001450 vs. TrEMBL
Match: A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh03G001450 vs. TrEMBL
Match: A0A061EXX4_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.9e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh03G001450 vs. TrEMBL
Match: W9SDZ8_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_000157 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.6e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh03G001450 vs. TrEMBL
Match: W9R147_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.6e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 22  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 81

Query: 140 ARRLR 145
           ARRLR
Sbjct: 82  ARRLR 86

[Close]

BLAST of CmaCh03G001450 vs. TAIR10
Match: AT3G10090.1 (AT3G10090.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh03G001450 vs. TAIR10
Match: AT5G03850.1 (AT5G03850.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh03G001450 vs. TAIR10
Match: AT5G64140.1 (AT5G64140.1 ribosomal protein S28)

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh03G001450 vs. NCBI nr
Match: gi|965609999|dbj|BAT96490.1| (hypothetical protein VIGAN_08344000, partial [Vigna angularis var. angularis])

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 63  AAAQSFSSIFFLLLLSGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVK 122
           AAA   SS FFL +   MESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVK
Sbjct: 17  AAATLASSPFFLNIR--MESQVKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVK 76

Query: 123 GPVREGDILTLLESEREARRLR 145
           GPVREGDILTLLESEREARRLR
Sbjct: 77  GPVREGDILTLLESEREARRLR 96

[Close]

BLAST of CmaCh03G001450 vs. NCBI nr
Match: gi|449440915|ref|XP_004138229.1| (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh03G001450 vs. NCBI nr
Match: gi|590637502|ref|XP_007029134.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao])

HSP 1 Score: 125.9 bits (315), Expect = 5.5e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh03G001450 vs. NCBI nr
Match: gi|502091073|ref|XP_004489433.1| (PREDICTED: 40S ribosomal protein S28 [Cicer arietinum])

HSP 1 Score: 125.2 bits (313), Expect = 9.4e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 80  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 139
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESERE 60

Query: 140 ARRLR 145
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh03G001450 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 125.2 bits (313), Expect = 9.4e-26
Identity = 69/99 (69.70%), Postives = 76/99 (76.77%), Query Frame = 1


Query: 56  SQVHPSPAAAQSFSSIFFLLLLSG----------MESQIKHAVVVKVMGRTGSRGQVTQV 115
           +Q    P   Q++S   F++  S           MESQ+KHAVVVKVMGRTGSRGQVTQV
Sbjct: 57  NQTLVQPRTIQTYSQTGFVIATSELSESAAKSTRMESQVKHAVVVKVMGRTGSRGQVTQV 116

Query: 116 RVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 145
           RVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 117 RVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR 155

The following BLAST results are available for this feature:

BLAST of CmaCh03G001450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS28_MAIZE	1.4e-24	90.77	40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1	[more]
RS281_ARATH	2.3e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1	[more]
RS282_ARATH	8.8e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1	[more]
RS28_ICTPU	1.7e-19	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1	[more]
RS28_DANRE	1.7e-19	80.33	40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1	[more]

BLAST of CmaCh03G001450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S3SUH5_PHAAN	1.3e-26	85.37	Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.08...	[more]
A0A0A0LPR2_CUCSA	1.7e-26	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1	[more]
A0A061EXX4_THECC	3.9e-26	98.46	Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3...	[more]
W9SDZ8_9ROSA	6.6e-26	96.92	40S ribosomal protein S28 OS=Morus notabilis GN=L484_000157 PE=3 SV=1	[more]
W9R147_9ROSA	6.6e-26	96.92	40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1	[more]

BLAST of CmaCh03G001450 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10090.1	1.3e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	1.3e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	5.0e-25	89.23	ribosomal protein S28	[more]

BLAST of CmaCh03G001450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|965609999\|dbj\|BAT96490.1\|	1.9e-26	85.37	hypothetical protein VIGAN_08344000, partial [Vigna angularis var. angularis]	[more]
gi\|449440915\|ref\|XP_004138229.1\|	2.5e-26	100.00	PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus]	[more]
gi\|590637502\|ref\|XP_007029134.1\|	5.5e-26	98.46	Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]	[more]
gi\|502091073\|ref\|XP_004489433.1\|	9.4e-26	98.46	PREDICTED: 40S ribosomal protein S28 [Cicer arietinum]	[more]
gi\|703132274\|ref\|XP_010105085.1\|	9.4e-26	69.70	40S ribosomal protein S28 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000289	Ribosomal_S28e
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G001450.1	CmaCh03G001450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PRODOM	PD005541		coord: 80..125 score: 3.0
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 80..144 score: 21
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 80..144 score: 1.9
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 83..143 score: 4.1
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 80..144 score: 2.4
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 80..144 score: 9.42

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G001450	Cla012100	Watermelon (97103) v1	cmawmB634
CmaCh03G001450	ClCG04G005640	Watermelon (Charleston Gray)	cmawcgB587
CmaCh03G001450	CmoCh03G001490	Cucurbita moschata (Rifu)	cmacmoB657
CmaCh03G001450	Lsi01G017710	Bottle gourd (USVL1VR-Ls)	cmalsiB601
CmaCh03G001450	Cp4.1LG10g11220	Cucurbita pepo (Zucchini)	cmacpeB655
CmaCh03G001450	Cla97C04G072230	Watermelon (97103) v2	cmawmbB686
CmaCh03G001450	Bhi03G002044	Wax gourd	cmawgoB0793
CmaCh03G001450	Carg24090	Silver-seed gourd	carcmaB0300
CmaCh03G001450	Carg13311	Silver-seed gourd	carcmaB0812

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh03G001450	CmaCh07G010910	Cucurbita maxima (Rimu)	cmacmaB524

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G001450	Cucurbita maxima (Rimu)	cmacmaB271
CmaCh03G001450	Cucumber (Gy14) v1	cgycmaB0109
CmaCh03G001450	Cucumber (Gy14) v1	cgycmaB0938
CmaCh03G001450	Cucurbita moschata (Rifu)	cmacmoB641
CmaCh03G001450	Cucurbita moschata (Rifu)	cmacmoB668
CmaCh03G001450	Wild cucumber (PI 183967)	cmacpiB670
CmaCh03G001450	Wild cucumber (PI 183967)	cmacpiB678
CmaCh03G001450	Cucumber (Chinese Long) v2	cmacuB662
CmaCh03G001450	Cucumber (Chinese Long) v2	cmacuB669
CmaCh03G001450	Melon (DHL92) v3.5.1	cmameB602
CmaCh03G001450	Melon (DHL92) v3.5.1	cmameB612
CmaCh03G001450	Watermelon (Charleston Gray)	cmawcgB573
CmaCh03G001450	Watermelon (97103) v1	cmawmB614
CmaCh03G001450	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G001450	Cucurbita pepo (Zucchini)	cmacpeB672
CmaCh03G001450	Cucurbita pepo (Zucchini)	cmacpeB682
CmaCh03G001450	Bottle gourd (USVL1VR-Ls)	cmalsiB611
CmaCh03G001450	Cucumber (Gy14) v2	cgybcmaB409
CmaCh03G001450	Cucumber (Gy14) v2	cgybcmaB534
CmaCh03G001450	Melon (DHL92) v3.6.1	cmamedB686
CmaCh03G001450	Melon (DHL92) v3.6.1	cmamedB697
CmaCh03G001450	Cucumber (Chinese Long) v3	cmacucB0791
CmaCh03G001450	Cucumber (Chinese Long) v3	cmacucB0798
CmaCh03G001450	Watermelon (97103) v2	cmawmbB674